CFINet: Cross-Modality MRI Feature Interaction Network for Pseudoprogression Prediction of Glioblastoma.

IF 1.4 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS Journal of Computational Biology Pub Date : 2024-07-08 DOI:10.1089/cmb.2024.0518
Ya Lv, Jin Liu, Xu Tian, Pei Yang, Yi Pan
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Abstract

Pseudoprogression (PSP) is a related reaction of glioblastoma treatment, and misdiagnosis can lead to unnecessary intervention. Magnetic resonance imaging (MRI) provides cross-modality images for PSP prediction studies. However, how to effectively use the complementary information between the cross-modality MRI to improve PSP prediction is still a challenging task. To address this challenge, we propose a cross-modality feature interaction network for PSP prediction. Firstly, we propose a triple-branch multi-scale module to extract low-order feature representations and a skip-connection multi-scale module to extract high-order feature representations. Then, a cross-modality interaction module based on attention mechanism is designed to make the complementary information between cross-modality MRI fully interact. Finally, the high-order cross-modality interaction information is fed into a multi-layer perceptron to achieve the PSP prediction task. We evaluate the proposed network on a private dataset with 52 subjects from Hunan Cancer Hospital and validate it on a private dataset with 30 subjects from Xiangya Hospital. The accuracy of our proposed network on the datasets is 0.954 and 0.929, respectively, which is better than most typical convolutional neural network and interaction methods.

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CFINet:用于胶质母细胞瘤假性进展预测的跨模态磁共振成像特征交互网络
假性进展(PSP)是胶质母细胞瘤治疗的相关反应,误诊可能导致不必要的干预。磁共振成像(MRI)可为PSP预测研究提供跨模态图像。然而,如何有效利用跨模态磁共振成像之间的互补信息来改善 PSP 预测仍是一项具有挑战性的任务。为了应对这一挑战,我们提出了一种用于 PSP 预测的跨模态特征交互网络。首先,我们提出了一个提取低阶特征表征的三分支多尺度模块和一个提取高阶特征表征的跳接多尺度模块。然后,设计了基于注意机制的跨模态交互模块,使跨模态磁共振成像之间的互补信息充分互动。最后,将高阶跨模态交互信息输入多层感知器,以完成 PSP 预测任务。我们在湖南省肿瘤医院 52 名受试者的私人数据集上评估了所提出的网络,并在湘雅医院 30 名受试者的私人数据集上进行了验证。我们提出的网络在这些数据集上的准确率分别为 0.954 和 0.929,优于大多数典型的卷积神经网络和交互方法。
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来源期刊
Journal of Computational Biology
Journal of Computational Biology 生物-计算机:跨学科应用
CiteScore
3.60
自引率
5.90%
发文量
113
审稿时长
6-12 weeks
期刊介绍: Journal of Computational Biology is the leading peer-reviewed journal in computational biology and bioinformatics, publishing in-depth statistical, mathematical, and computational analysis of methods, as well as their practical impact. Available only online, this is an essential journal for scientists and students who want to keep abreast of developments in bioinformatics. Journal of Computational Biology coverage includes: -Genomics -Mathematical modeling and simulation -Distributed and parallel biological computing -Designing biological databases -Pattern matching and pattern detection -Linking disparate databases and data -New tools for computational biology -Relational and object-oriented database technology for bioinformatics -Biological expert system design and use -Reasoning by analogy, hypothesis formation, and testing by machine -Management of biological databases
期刊最新文献
A Hybrid GNN Approach for Improved Molecular Property Prediction. Protein-Protein Interaction Prediction Model Based on ProtBert-BiGRU-Attention. BiRNN-DDI: A Drug-Drug Interaction Event Type Prediction Model Based on Bidirectional Recurrent Neural Network and Graph2Seq Representation. SuperTAD-Fast: Accelerating Topologically Associating Domains Detection Through Discretization. CFINet: Cross-Modality MRI Feature Interaction Network for Pseudoprogression Prediction of Glioblastoma.
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