A novel deep learning model based on transformer and cross modality attention for classification of sleep stages

IF 4 2区 医学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Journal of Biomedical Informatics Pub Date : 2024-07-18 DOI:10.1016/j.jbi.2024.104689
Sahar Hassanzadeh Mostafaei , Jafar Tanha , Amir Sharafkhaneh
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Abstract

The classification of sleep stages is crucial for gaining insights into an individual’s sleep patterns and identifying potential health issues. Employing several important physiological channels in different views, each providing a distinct perspective on sleep patterns, can have a great impact on the efficiency of the classification models. In the context of neural networks and deep learning models, transformers are very effective, especially when dealing with time series data, and have shown remarkable compatibility with sequential data analysis as physiological channels. On the other hand, cross-modality attention by integrating information from multiple views of the data enables to capture relationships among different modalities, allowing models to selectively focus on relevant information from each modality. In this paper, we introduce a novel deep-learning model based on transformer encoder-decoder and cross-modal attention for sleep stage classification. The proposed model processes information from various physiological channels with different modalities using the Sleep Heart Health Study Dataset (SHHS) data and leverages transformer encoders for feature extraction and cross-modal attention for effective integration to feed into the transformer decoder. The combination of these elements increased the accuracy of the model up to 91.33% in classifying five classes of sleep stages. Empirical evaluations demonstrated the model’s superior performance compared to standalone approaches and other state-of-the-art techniques, showcasing the potential of combining transformer and cross-modal attention for improved sleep stage classification.

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基于变换器和跨模态注意力的新型深度学习模型,用于睡眠阶段分类。
睡眠阶段的分类对于深入了解个人的睡眠模式和识别潜在的健康问题至关重要。在不同的视图中采用多个重要的生理通道,每个通道都能从不同的角度反映睡眠模式,这对分类模型的效率有很大影响。在神经网络和深度学习模型方面,变换器非常有效,尤其是在处理时间序列数据时,并显示出与作为生理通道的序列数据分析的显著兼容性。另一方面,跨模态关注通过整合来自数据多个视图的信息,能够捕捉不同模态之间的关系,使模型有选择性地关注来自每个模态的相关信息。本文介绍了一种基于变压器编码器-解码器和跨模态注意力的新型深度学习模型,用于睡眠阶段分类。所提出的模型利用睡眠心脏健康研究数据集(SHHS)数据处理来自不同模态的各种生理通道的信息,并利用变压器编码器进行特征提取,利用跨模态注意力进行有效整合,以输入变压器解码器。这些元素的结合使模型在对五类睡眠阶段进行分类时的准确率提高到 91.33%。实证评估表明,与独立方法和其他最先进的技术相比,该模型的性能更优越,展示了结合变压器和跨模态注意力改进睡眠阶段分类的潜力。
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来源期刊
Journal of Biomedical Informatics
Journal of Biomedical Informatics 医学-计算机:跨学科应用
CiteScore
8.90
自引率
6.70%
发文量
243
审稿时长
32 days
期刊介绍: The Journal of Biomedical Informatics reflects a commitment to high-quality original research papers, reviews, and commentaries in the area of biomedical informatics methodology. Although we publish articles motivated by applications in the biomedical sciences (for example, clinical medicine, health care, population health, and translational bioinformatics), the journal emphasizes reports of new methodologies and techniques that have general applicability and that form the basis for the evolving science of biomedical informatics. Articles on medical devices; evaluations of implemented systems (including clinical trials of information technologies); or papers that provide insight into a biological process, a specific disease, or treatment options would generally be more suitable for publication in other venues. Papers on applications of signal processing and image analysis are often more suitable for biomedical engineering journals or other informatics journals, although we do publish papers that emphasize the information management and knowledge representation/modeling issues that arise in the storage and use of biological signals and images. System descriptions are welcome if they illustrate and substantiate the underlying methodology that is the principal focus of the report and an effort is made to address the generalizability and/or range of application of that methodology. Note also that, given the international nature of JBI, papers that deal with specific languages other than English, or with country-specific health systems or approaches, are acceptable for JBI only if they offer generalizable lessons that are relevant to the broad JBI readership, regardless of their country, language, culture, or health system.
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