Unsupervised cervical cell instance segmentation method integrating cellular characteristics.

IF 2.6 4区 医学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Medical & Biological Engineering & Computing Pub Date : 2024-11-04 DOI:10.1007/s11517-024-03222-9
Yining Xie, Jingling Gao, Xueyan Bi, Jing Zhao
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Abstract

Cell instance segmentation is a key technology for cervical cancer auxiliary diagnosis systems. However, pixel-level annotation is time-consuming and labor-intensive, making it difficult to obtain a large amount of annotated data. This results in the model not being fully trained. In response to these problems, this paper proposes an unsupervised cervical cell instance segmentation method that integrates cell characteristics. Cervical cells have a clear corresponding structure between the nucleus and cytoplasm. This method fully takes this feature into account by building a dual-flow framework to locate the nucleus and cytoplasm and generate high-quality pseudo-labels. In the nucleus segmentation stage, the position and range of the nucleus are determined using the standard cell-restricted nucleus segmentation method. In the cytoplasm segmentation stage, a multi-angle collaborative segmentation method is used to achieve the positioning of the cytoplasm. First, taking advantage of the self-similarity characteristics of pixel blocks in cells, a cytoplasmic segmentation method based on self-similarity map iteration is proposed. The pixel blocks are mapped from the perspective of local details, and the iterative segmentation is repeated. Secondly, using low-level features such as cell color and shape, a self-supervised heatmap-aware cytoplasm segmentation method is proposed to obtain the activation map of the cytoplasm from the perspective of global attention. The two methods are fused to determine cytoplasmic regions, and combined with nuclear locations, high-quality pseudo-labels are generated. These pseudo-labels are used to train the model cyclically, and the loss strategy is used to encourage the model to discover new object masks, thereby obtaining a segmentation model with better performance. Experimental results show that this method achieves good results in cytoplasm segmentation. On the three datasets of ISBI, MS_CellSeg, and Cx22, 54.32%, 44.64%, and 66.52% AJI were obtained, respectively, which is better than other typical unsupervised methods selected in this article.

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整合细胞特征的无监督宫颈细胞实例分割方法。
细胞实例分割是宫颈癌辅助诊断系统的一项关键技术。然而,像素级标注耗时耗力,难以获得大量标注数据。这导致模型无法得到充分训练。针对这些问题,本文提出了一种结合细胞特征的无监督宫颈细胞实例分割方法。宫颈细胞的细胞核和细胞质之间有明显的对应结构。该方法充分考虑了这一特点,通过构建双流框架来定位细胞核和细胞质,并生成高质量的伪标签。在细胞核分割阶段,使用标准的细胞限制性细胞核分割方法确定细胞核的位置和范围。在细胞质分割阶段,采用多角度协作分割方法实现细胞质的定位。首先,利用细胞中像素块的自相似性特征,提出了一种基于自相似性映射迭代的细胞质分割方法。从局部细节的角度对像素块进行映射,并重复迭代分割。其次,利用细胞颜色和形状等低层次特征,提出了一种自监督热图感知细胞质分割方法,从全局关注的角度获取细胞质的激活图。两种方法融合后可确定细胞质区域,并结合细胞核位置生成高质量的伪标签。这些伪标签用于循环训练模型,损失策略用于鼓励模型发现新的对象掩码,从而获得性能更好的分割模型。实验结果表明,该方法在细胞质分割方面取得了良好的效果。在 ISBI、MS_CellSeg 和 Cx22 三个数据集上,分别获得了 54.32%、44.64% 和 66.52% 的 AJI,优于本文选取的其他典型无监督方法。
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来源期刊
Medical & Biological Engineering & Computing
Medical & Biological Engineering & Computing 医学-工程:生物医学
CiteScore
6.00
自引率
3.10%
发文量
249
审稿时长
3.5 months
期刊介绍: Founded in 1963, Medical & Biological Engineering & Computing (MBEC) continues to serve the biomedical engineering community, covering the entire spectrum of biomedical and clinical engineering. The journal presents exciting and vital experimental and theoretical developments in biomedical science and technology, and reports on advances in computer-based methodologies in these multidisciplinary subjects. The journal also incorporates new and evolving technologies including cellular engineering and molecular imaging. MBEC publishes original research articles as well as reviews and technical notes. Its Rapid Communications category focuses on material of immediate value to the readership, while the Controversies section provides a forum to exchange views on selected issues, stimulating a vigorous and informed debate in this exciting and high profile field. MBEC is an official journal of the International Federation of Medical and Biological Engineering (IFMBE).
期刊最新文献
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