Phospho-regulation of ASCL1-mediated chromatin opening during cellular reprogramming.

IF 3.7 2区 生物学 Q1 DEVELOPMENTAL BIOLOGY Development Pub Date : 2024-11-22 DOI:10.1242/dev.204329
Roberta Azzarelli, Sarah Gillen, Frances Connor, Jethro Lundie-Brown, Francesca Puletti, Rosalind Drummond, Ana Raffaelli, Anna Philpott
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Abstract

The proneural transcription factor ASCL1 regulates neurogenesis and drives somatic cell reprogramming into neurons. However, not all cell types can be reprogrammed by ASCL1, raising the questions of what provides competence and how we can overcome barriers to enable directed differentiation. Here, we investigate how levels of ASCL1 and its phosphorylation modulate its activity over progressive lineage restriction of embryonic stem cells. We find that inhibition of ASCL1 phosphorylation enhances reprogramming of both mesodermal and neuroectodermal cells, while pluripotent cells remain refractory to ASCL1-directed neuronal differentiation. By performing RNA-seq and ATAC-seq in neuroectoderm, we find that un(der)phosphorylated ASCL1 causes increased chromatin accessibility at sites proximal to neuronal genes, accompanied by their increased expression. Combined analysis of protein stability and proneural function of phosphomutant and phosphomimetic ASCL1 reveals that protein stability plays only a marginal role in regulating activity, while changes in amino acid charge cannot fully explain enhanced activity of the serine-proline mutant variants of ASCL1. Our work provides new insights into proneural factor activity and regulation and suggests ways to optimize reprogramming protocols in cancer and regenerative medicine.

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细胞重编程过程中 ASCL1 介导的染色质开放的磷酸调控。
朊病毒转录因子 ASCL1 可调节神经发生并驱动体细胞重编程为神经元。然而,并非所有细胞类型都能被ASCL1重编程,这就提出了一个问题:是什么提供了能力,以及我们如何克服障碍以实现定向分化?在此,我们研究了ASCL1的水平及其磷酸化如何调节其在胚胎干细胞逐步限制系谱过程中的活性。我们发现,抑制ASCL1的磷酸化可增强中胚层细胞和神经外胚层细胞的重编程,而多能细胞对ASCL1引导的神经元分化仍有抵抗力。通过对神经外胚层进行RNA-seq和ATAC-seq分析,我们发现未(脱)磷酸化的ASCL1会导致神经元基因近端位点的染色质可及性增加,同时这些基因的表达也会增加。对磷酸突变体和磷酸拟态 ASCL1 蛋白质稳定性和朊病毒功能的综合分析表明,蛋白质稳定性在调节活性方面只起到微不足道的作用,而氨基酸电荷的变化不能完全解释丝氨酸-脯氨酸突变体变体 ASCL1 活性增强的原因。我们的研究为朊病毒因子的活性和调控提供了新的见解,并为优化癌症和再生医学中的重编程方案提出了建议。
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来源期刊
Development
Development 生物-发育生物学
CiteScore
6.70
自引率
4.30%
发文量
433
审稿时长
3 months
期刊介绍: Development’s scope covers all aspects of plant and animal development, including stem cell biology and regeneration. The single most important criterion for acceptance in Development is scientific excellence. Research papers (articles and reports) should therefore pose and test a significant hypothesis or address a significant question, and should provide novel perspectives that advance our understanding of development. We also encourage submission of papers that use computational methods or mathematical models to obtain significant new insights into developmental biology topics. Manuscripts that are descriptive in nature will be considered only when they lay important groundwork for a field and/or provide novel resources for understanding developmental processes of broad interest to the community. Development includes a Techniques and Resources section for the publication of new methods, datasets, and other types of resources. Papers describing new techniques should include a proof-of-principle demonstration that the technique is valuable to the developmental biology community; they need not include in-depth follow-up analysis. The technique must be described in sufficient detail to be easily replicated by other investigators. Development will also consider protocol-type papers of exceptional interest to the community. We welcome submission of Resource papers, for example those reporting new databases, systems-level datasets, or genetic resources of major value to the developmental biology community. For all papers, the data or resource described must be made available to the community with minimal restrictions upon publication. To aid navigability, Development has dedicated sections of the journal to stem cells & regeneration and to human development. The criteria for acceptance into these sections is identical to those outlined above. Authors and editors are encouraged to nominate appropriate manuscripts for inclusion in one of these sections.
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