A new rigid non-polarizable model for semi-heavy water: TIP4P/2005-SHW.

IF 3.1 2区 化学 Q3 CHEMISTRY, PHYSICAL Journal of Chemical Physics Pub Date : 2024-12-21 DOI:10.1063/5.0240271
Tetsuyuki Takayama, Takuhiro Otosu, Shoichi Yamaguchi
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Abstract

In molecular dynamics (MD) simulations of water, rigid non-polarizable models are still valuable and widely used because of their low computational cost and excellent performance. Most of such models have been for light water (H2O) for a long time, and a few have recently been reported for heavy water (D2O). The specific models of D2O are needed because of its notably slower dynamics and stronger hydrogen bond than H2O. To our knowledge, no models of semi-heavy water (HOD) were made, although HOD is the most abundant and, therefore, most important chemical species in isotopically diluted water (IDW) prepared by mixing equal amounts of H2O and D2O. For precise MD simulations of IDW, a specific model of HOD is definitely needed. Here, we report the development of a new rigid non-polarizable model of HOD, TIP4P/2005-SHW, on the basis of the most popular H2O model, TIP4P/2005, and its D2O counterpart, TIP4P/2005-HW. We show the details of the development and demonstrate the high reproducibility of TIP4P/2005-SHW in terms of the density, the temperature of maximum density, the viscosity, and the diffusion coefficient.

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一种新的半重水刚性非极化模型TIP4P/2005-SHW.
在水的分子动力学(MD)模拟中,刚性非极化模型因其计算成本低、性能优越而仍具有重要价值并得到广泛应用。长期以来,大多数此类模型都是针对轻水(H2O)的,最近也有一些针对重水(D2O)的报道。由于 D2O 的动力学速度比 H2O 慢,氢键比 H2O 强,因此需要特定的 D2O 模型。据我们所知,还没有半重水(HOD)的模型,尽管 HOD 是等量 H2O 和 D2O 混合制备的同位素稀释水(IDW)中最丰富也是最重要的化学物种。要对 IDW 进行精确的 MD 模拟,肯定需要一个特定的 HOD 模型。在此,我们报告了在最流行的 H2O 模型 TIP4P/2005 及其 D2O 对应模型 TIP4P/2005-HW 的基础上,开发的一种新的刚性非极化 HOD 模型 TIP4P/2005-SHW。我们展示了开发的细节,并证明 TIP4P/2005-SHW 在密度、最大密度温度、粘度和扩散系数方面具有很高的重现性。
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来源期刊
Journal of Chemical Physics
Journal of Chemical Physics 物理-物理:原子、分子和化学物理
CiteScore
7.40
自引率
15.90%
发文量
1615
审稿时长
2 months
期刊介绍: The Journal of Chemical Physics publishes quantitative and rigorous science of long-lasting value in methods and applications of chemical physics. The Journal also publishes brief Communications of significant new findings, Perspectives on the latest advances in the field, and Special Topic issues. The Journal focuses on innovative research in experimental and theoretical areas of chemical physics, including spectroscopy, dynamics, kinetics, statistical mechanics, and quantum mechanics. In addition, topical areas such as polymers, soft matter, materials, surfaces/interfaces, and systems of biological relevance are of increasing importance. Topical coverage includes: Theoretical Methods and Algorithms Advanced Experimental Techniques Atoms, Molecules, and Clusters Liquids, Glasses, and Crystals Surfaces, Interfaces, and Materials Polymers and Soft Matter Biological Molecules and Networks.
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