New approach methodologies for risk assessment using deep learning

IF 3.3 3区 农林科学 Q2 FOOD SCIENCE & TECHNOLOGY EFSA Journal Pub Date : 2024-12-20 DOI:10.2903/j.efsa.2024.e221105
Enol Junquera, Irene Díaz, Susana Montes, Ferdinando Febbraio
{"title":"New approach methodologies for risk assessment using deep learning","authors":"Enol Junquera,&nbsp;Irene Díaz,&nbsp;Susana Montes,&nbsp;Ferdinando Febbraio","doi":"10.2903/j.efsa.2024.e221105","DOIUrl":null,"url":null,"abstract":"<p>The advancement of technologies and the development of more efficient artificial intelligence (AI) enable the processing of large amounts of data in a very short time. Concurrently, the increase in information within biological databases, such as 3D molecular structures or networks of functional macromolecule associations, will facilitate the creation of new methods for risk assessment that can serve as alternatives to animal testing. Specifically, the predictive capabilities of AI as new approach methodologies (NAMs) are poised to revolutionise risk assessment approaches. Our previous studies on molecular docking predictions, using the software Autodock Vina, indicated high-affinity binding of certain toxic chemicals to the 3D structures of human proteins associated with nervous and reproductive functions. Similar approaches revealed potential sublethal interactions of neonicotinoids with proteins linked to the bees' immune system. Building on these findings, we plan to develop an AI-based decision tool that exploits the data available on the toxicity of the most know chemical, such as LD50, and the data obtainable by their interaction with the human proteins to support risk assessment studies for multiple stressors still not characterised. Our focus will be on utilising these new bioinformatics methodologies to develop specific experimental designs that allow for confident and predictable study of the toxic and sublethal effects of pesticides on humans. We will also validate the developed NAMs by integrating existing in vivo information from scientific literature and technical reports. These approaches will significantly impact toxicity studies, guiding researchers' experiments and greatly reducing the need for animal testing.</p>","PeriodicalId":11657,"journal":{"name":"EFSA Journal","volume":"22 S1","pages":""},"PeriodicalIF":3.3000,"publicationDate":"2024-12-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.2903/j.efsa.2024.e221105","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"EFSA Journal","FirstCategoryId":"97","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.2903/j.efsa.2024.e221105","RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"FOOD SCIENCE & TECHNOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

The advancement of technologies and the development of more efficient artificial intelligence (AI) enable the processing of large amounts of data in a very short time. Concurrently, the increase in information within biological databases, such as 3D molecular structures or networks of functional macromolecule associations, will facilitate the creation of new methods for risk assessment that can serve as alternatives to animal testing. Specifically, the predictive capabilities of AI as new approach methodologies (NAMs) are poised to revolutionise risk assessment approaches. Our previous studies on molecular docking predictions, using the software Autodock Vina, indicated high-affinity binding of certain toxic chemicals to the 3D structures of human proteins associated with nervous and reproductive functions. Similar approaches revealed potential sublethal interactions of neonicotinoids with proteins linked to the bees' immune system. Building on these findings, we plan to develop an AI-based decision tool that exploits the data available on the toxicity of the most know chemical, such as LD50, and the data obtainable by their interaction with the human proteins to support risk assessment studies for multiple stressors still not characterised. Our focus will be on utilising these new bioinformatics methodologies to develop specific experimental designs that allow for confident and predictable study of the toxic and sublethal effects of pesticides on humans. We will also validate the developed NAMs by integrating existing in vivo information from scientific literature and technical reports. These approaches will significantly impact toxicity studies, guiding researchers' experiments and greatly reducing the need for animal testing.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
利用深度学习进行风险评估的新方法
技术的进步和更高效的人工智能(AI)的发展使得在很短的时间内处理大量数据成为可能。同时,生物数据库中信息的增加,如3D分子结构或功能大分子关联网络,将有助于创建新的风险评估方法,可以作为动物试验的替代方法。具体来说,人工智能作为新方法方法(NAMs)的预测能力将彻底改变风险评估方法。我们之前使用Autodock Vina软件进行的分子对接预测研究表明,某些有毒化学物质与与神经和生殖功能相关的人类蛋白质的3D结构具有高亲和力结合。类似的方法揭示了新烟碱类与蜜蜂免疫系统相关的蛋白质之间潜在的亚致死相互作用。在这些发现的基础上,我们计划开发一种基于人工智能的决策工具,利用最已知的化学物质(如LD50)的毒性数据,以及它们与人类蛋白质相互作用的数据,支持对多种尚未表征的压力源的风险评估研究。我们的重点将是利用这些新的生物信息学方法来制定具体的实验设计,以便对农药对人类的毒性和亚致死效应进行自信和可预测的研究。我们还将通过整合来自科学文献和技术报告的现有体内信息来验证开发的NAMs。这些方法将显著影响毒性研究,指导研究人员的实验,并大大减少对动物试验的需求。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
EFSA Journal
EFSA Journal Veterinary-Veterinary (miscellaneous)
CiteScore
5.20
自引率
21.20%
发文量
422
审稿时长
5 weeks
期刊介绍: The EFSA Journal covers methods of risk assessment, reports on data collected, and risk assessments in the individual areas of plant health, plant protection products and their residues, genetically modified organisms, additives and products or substances used in animal feed, animal health and welfare, biological hazards including BSE/TSE, contaminants in the food chain, food contact materials, enzymes, flavourings and processing aids, food additives and nutrient sources added to food, dietetic products, nutrition and allergies.
期刊最新文献
Safety evaluation of an extension of use of the food enzyme cyclomaltodextrin glucanotransferase from the non-genetically modified Anoxybacillus caldiproteolyticus strain AE-KCGT Safety evaluation of the food enzyme cyclomaltodextrin glucanotransferase from the non-genetically modified Anoxybacillus caldiproteolyticus strain AE-KCGT Statement on the update of maximum residue levels (MRLs) for copper compounds in light of the EFSA scientific opinion on the re-evaluation of the health-based guidance values (HBGVs) and exposure assessment from all sources Assessment of the feed additive consisting of Lactiplantibacillus plantarum DSM 16627 for all animal species for the renewal of its authorisation (Microferm Ltd.) Safety and efficacy of feed additives consisting of vitamin B2 (98%) and vitamin B2 (80%) produced with Bacillus subtilis CGMCC 7.449 for all animal species (Chifeng Pharmaceutical Co., Ltd.)
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1