Biopsy location and tumor-associated macrophages in predicting malignant glioma recurrence using an in-silico model.

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY NPJ Systems Biology and Applications Pub Date : 2025-01-08 DOI:10.1038/s41540-024-00478-7
Pejman Shojaee, Edwin Weinholtz, Nadine S Schaadt, Friedrich Feuerhake, Haralampos Hatzikirou
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Abstract

Predicting the biological behavior and time to recurrence (TTR) of high-grade diffuse gliomas (HGG) after maximum safe neurosurgical resection and combined radiation and chemotherapy plays a pivotal role in planning clinical follow-up, selecting potentially necessary second-line treatment and improving the quality of life for patients diagnosed with a malignant brain tumor. The current standard-of-care (SoC) for HGG includes follow-up neuroradiological imaging to detect recurrence as early as possible and relies on several clinical, neuropathological, and radiological prognostic factors, which have limited accuracy in predicting TTR. In this study, using an in-silico analysis, we aim to improve predictive power for TTR by considering the role of (i) prognostically relevant information available through diagnostics used in the current SoC, (ii) advanced image-based information not currently part of the standard diagnostic workup, such as tumor-normal tissue interface (edge) features and quantitative data specific to biopsy positions within the tumor, and (iii) information on tumor-associated macrophages. In particular, we introduced a state-of-the-art spatio-temporal model of tumor-immune interactions, emphasizing the interplay between macrophages and glioma cells. This model serves as a synthetic reality for assessing the predictive value of various features. We generated a cohort of virtual patients based on our mathematical model. Each patient's dataset includes simulated T1Gd and Fluid-attenuated inversion recovery (FLAIR) MRI volumes. T1-weighted imaging highlights anatomical structures with high contrast, providing clear detail on brain morphology, whereas FLAIR suppresses fluid signals, improving the visualization of lesions near fluid-filled spaces, which is particularly helpful for identifying peritumoral edema. Additionally, we simulated results on macrophage density and proliferative activity, either in a specified part of the tumor, namely the tumor core or edge ("localized"), or unspecified ("non-localized"). To enhance the realism of our synthetic data, we imposed different levels of noise. Our findings reveal that macrophage density at the tumor edge contributed to a high predictive value of feature importance for the selected regression model. Moreover, there are lower MSE values for the "localized" biopsy in prediction accuracy toward recurrence post-resection compared with "non-localized" specimens in the noisy data. In conclusion, the results show that localized biopsies provided more information about tumor behavior, especially at the interface of tumor and normal tissue (Edge).

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活检位置和肿瘤相关巨噬细胞在预测恶性胶质瘤复发中的应用。
预测高级别弥漫性胶质瘤(HGG)在最大安全神经外科切除和放化疗联合治疗后的生物学行为和复发时间(TTR)对恶性脑肿瘤患者的临床随访计划、选择可能必要的二线治疗和改善生活质量具有关键作用。目前HGG的标准治疗(SoC)包括随访神经放射成像以尽早发现复发,并依赖于几种临床、神经病理和放射预后因素,这些因素在预测TTR方面的准确性有限。在这项研究中,我们利用计算机分析,旨在通过考虑以下因素的作用来提高TTR的预测能力:(i)通过当前SoC中使用的诊断可获得的预后相关信息,(ii)目前不属于标准诊断工作的高级基于图像的信息,如肿瘤-正常组织界面(边缘)特征和肿瘤内活检位置特定的定量数据,以及(iii)肿瘤相关巨噬细胞的信息。特别是,我们介绍了最先进的肿瘤-免疫相互作用的时空模型,强调巨噬细胞和胶质瘤细胞之间的相互作用。该模型作为综合现实,用于评估各种特征的预测价值。我们根据数学模型生成了一组虚拟病人。每个患者的数据集包括模拟T1Gd和液体衰减反转恢复(FLAIR) MRI体积。t1加权成像突出高对比度的解剖结构,提供清晰的脑形态学细节,而FLAIR抑制液体信号,改善充满液体的间隙附近病变的可视化,这对识别肿瘤周围水肿特别有帮助。此外,我们模拟了巨噬细胞密度和增殖活性的结果,无论是在肿瘤的特定部分,即肿瘤核心或边缘(“局部”),还是未指定(“非局部”)。为了增强合成数据的真实感,我们施加了不同程度的噪声。我们的研究结果表明,肿瘤边缘的巨噬细胞密度对所选回归模型的特征重要性有很高的预测价值。此外,与噪声数据中的“非定位”标本相比,“定位”活检对切除后复发的预测精度的MSE值更低。总之,结果表明,局部活检提供了更多关于肿瘤行为的信息,特别是在肿瘤和正常组织的界面(Edge)。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
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