Cell-Free Systems to Mimic and Expand Metabolism.

IF 3.9 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS ACS Synthetic Biology Pub Date : 2025-02-21 Epub Date: 2025-01-29 DOI:10.1021/acssynbio.4c00729
Blake J Rasor, Tobias J Erb
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Abstract

Cell-free synthetic biology incorporates purified components and/or crude cell extracts to carry out metabolic and genetic programs. While protein synthesis has historically been the primary focus, more metabolism researchers are now turning toward cell-free systems either to prototype pathways for cellular implementation or to design new-to-nature reaction networks that incorporate environmentally relevant substrates or new energy sources. The ability to design, build, and test enzyme combinations in vitro has accelerated efforts to understand metabolic bottlenecks and engineer high-yielding pathways. However, only a small fraction of metabolic possibilities has been explored in cell-free systems, and extracts from model organisms remain the most common starting points. Expanding the scope of cell-free metabolism to include extracts from new organisms, alternative metabolic pathways, and non-natural chemistries will enhance our ability to understand and engineer bio-based chemical conversions.

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模拟和扩展新陈代谢的无细胞系统。
无细胞合成生物学包含纯化组分和/或粗细胞提取物,以执行代谢和遗传程序。虽然蛋白质合成在历史上一直是主要的焦点,但更多的代谢研究人员现在转向无细胞系统,要么是细胞实现的原型途径,要么是设计新的自然反应网络,其中包含与环境相关的底物或新能源。体外设计、构建和测试酶组合的能力加速了理解代谢瓶颈和设计高产途径的努力。然而,在无细胞系统中只探索了一小部分代谢可能性,而模式生物的提取物仍然是最常见的起点。将无细胞代谢的范围扩大到包括来自新生物体的提取物、替代代谢途径和非天然化学物质,将增强我们理解和设计生物基化学转化的能力。
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来源期刊
CiteScore
8.00
自引率
10.60%
发文量
380
审稿时长
6-12 weeks
期刊介绍: The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism. Topics may include, but are not limited to: Design and optimization of genetic systems Genetic circuit design and their principles for their organization into programs Computational methods to aid the design of genetic systems Experimental methods to quantify genetic parts, circuits, and metabolic fluxes Genetic parts libraries: their creation, analysis, and ontological representation Protein engineering including computational design Metabolic engineering and cellular manufacturing, including biomass conversion Natural product access, engineering, and production Creative and innovative applications of cellular programming Medical applications, tissue engineering, and the programming of therapeutic cells Minimal cell design and construction Genomics and genome replacement strategies Viral engineering Automated and robotic assembly platforms for synthetic biology DNA synthesis methodologies Metagenomics and synthetic metagenomic analysis Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction Gene optimization Methods for genome-scale measurements of transcription and metabolomics Systems biology and methods to integrate multiple data sources in vitro and cell-free synthetic biology and molecular programming Nucleic acid engineering.
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