Sponge taxonomy in the -omics era: resolving Haplosclerida polytomies with phylogenetics and metabolomics

IF 2 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Biochemical Systematics and Ecology Pub Date : 2025-06-01 Epub Date: 2025-01-31 DOI:10.1016/j.bse.2025.104971
Camille V. Leal , André Bispo , Mirelle Takaki , Vitor F. Freire , Maggie M. Reddy , Fabiano L. Thompson , Eduardo Hajdu , Olivier P. Thomas , Roberto G.S. Berlinck
{"title":"Sponge taxonomy in the -omics era: resolving Haplosclerida polytomies with phylogenetics and metabolomics","authors":"Camille V. Leal ,&nbsp;André Bispo ,&nbsp;Mirelle Takaki ,&nbsp;Vitor F. Freire ,&nbsp;Maggie M. Reddy ,&nbsp;Fabiano L. Thompson ,&nbsp;Eduardo Hajdu ,&nbsp;Olivier P. Thomas ,&nbsp;Roberto G.S. Berlinck","doi":"10.1016/j.bse.2025.104971","DOIUrl":null,"url":null,"abstract":"<div><div>With several new taxa described every day, we are still in the Age of Discovery of the biodiversity. On the other hand, the sixth mass extinction of biological species is underway, rapid, and aggressive, which renders the description of biodiversity to inform conservation, of high priority. Systematics allows a reliable assessment of biological diversity, facilitating conservation management. Unfortunately, marine invertebrates often present few morphological characters that help to define boundaries and classify taxa. Therefore, the integration of new approaches and data is necessary to obtain more robust diagnostic characters enabling a more accurate identification of the taxa. The sponge order Haplosclerida is no exception within the Metazoa in general when it comes to a sizeable mismatch between the growing phylogeny of the group and its accepted classification. The monophyly of marine haplosclerids is well supported, whereas many of the Haplosclerida families and even genera are paraphyletic. A deep morphological, molecular and metabolomic investigation of all species of the genus <em>Arenosclera</em> (Callyspongiidae, Haplosclerida) allowed a reassessment of the genus’ diagnosis, a description of the new genus <em>Arenospicula</em> gen. nov., and a reorganization of species in the classification. Our results highlight the potential of an integrative approach to solve part of the extensive mismatch between phylogeny and classification for the Haplosclerida. Integration of morphology, molecular and metabolomic data is a robust way to face the challenge of widespread polyphyly in every non-monotypic higher taxon within the Haplosclerida. Integration of these data could also lead to a more accurate and natural view of genera and family boundaries of currently para- and polyphyletic taxa in marine invertebrates.</div></div>","PeriodicalId":8799,"journal":{"name":"Biochemical Systematics and Ecology","volume":"120 ","pages":"Article 104971"},"PeriodicalIF":2.0000,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biochemical Systematics and Ecology","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0305197825000201","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/31 0:00:00","PubModel":"Epub","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

Abstract

With several new taxa described every day, we are still in the Age of Discovery of the biodiversity. On the other hand, the sixth mass extinction of biological species is underway, rapid, and aggressive, which renders the description of biodiversity to inform conservation, of high priority. Systematics allows a reliable assessment of biological diversity, facilitating conservation management. Unfortunately, marine invertebrates often present few morphological characters that help to define boundaries and classify taxa. Therefore, the integration of new approaches and data is necessary to obtain more robust diagnostic characters enabling a more accurate identification of the taxa. The sponge order Haplosclerida is no exception within the Metazoa in general when it comes to a sizeable mismatch between the growing phylogeny of the group and its accepted classification. The monophyly of marine haplosclerids is well supported, whereas many of the Haplosclerida families and even genera are paraphyletic. A deep morphological, molecular and metabolomic investigation of all species of the genus Arenosclera (Callyspongiidae, Haplosclerida) allowed a reassessment of the genus’ diagnosis, a description of the new genus Arenospicula gen. nov., and a reorganization of species in the classification. Our results highlight the potential of an integrative approach to solve part of the extensive mismatch between phylogeny and classification for the Haplosclerida. Integration of morphology, molecular and metabolomic data is a robust way to face the challenge of widespread polyphyly in every non-monotypic higher taxon within the Haplosclerida. Integration of these data could also lead to a more accurate and natural view of genera and family boundaries of currently para- and polyphyletic taxa in marine invertebrates.

Abstract Image

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
组学时代的海绵分类:用系统发育学和代谢组学解决单倍体多组性
每天都有几个新的分类群被发现,我们仍然处于生物多样性的发现时代。另一方面,第六次生物物种大灭绝正在进行中,迅速而猛烈,这使得生物多样性的描述成为保护的重中之重。分类学有助于对生物多样性进行可靠的评估,促进保护管理。不幸的是,海洋无脊椎动物通常表现出很少的形态特征,这些特征有助于定义边界和分类群。因此,有必要整合新的方法和数据,以获得更可靠的诊断特征,从而更准确地识别分类群。海绵目Haplosclerida在后生动物中也不例外,当涉及到该群体的生长系统发育与其公认的分类之间的相当大的不匹配时。海洋单倍体的单系性得到了很好的支持,而单倍体的许多科甚至属是副系的。对砂螺属所有种进行了深入的形态学、分子和代谢组学研究,对该属的诊断进行了重新评估,对新属砂螺属gen. nov.进行了描述,并对分类中的物种进行了重组。我们的结果强调了一种综合方法的潜力,可以解决单轴虫系统发育和分类之间广泛不匹配的部分问题。形态学、分子和代谢组学数据的整合是面对单倍体中每个非单型高等分类群广泛存在的多聚性挑战的有力方法。这些数据的整合还可以使我们对目前海洋无脊椎动物的准种和多种分类群的属和科边界有更准确和自然的认识。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Biochemical Systematics and Ecology
Biochemical Systematics and Ecology 生物-进化生物学
CiteScore
3.00
自引率
12.50%
发文量
147
审稿时长
43 days
期刊介绍: Biochemical Systematics and Ecology is devoted to the publication of original papers and reviews, both submitted and invited, in two subject areas: I) the application of biochemistry to problems relating to systematic biology of organisms (biochemical systematics); II) the role of biochemistry in interactions between organisms or between an organism and its environment (biochemical ecology). In the Biochemical Systematics subject area, comparative studies of the distribution of (secondary) metabolites within a wider taxon (e.g. genus or family) are welcome. Comparative studies, encompassing multiple accessions of each of the taxa within their distribution are particularly encouraged. Welcome are also studies combining classical chemosystematic studies (such as comparative HPLC-MS or GC-MS investigations) with (macro-) molecular phylogenetic studies. Studies that involve the comparative use of compounds to help differentiate among species such as adulterants or substitutes that illustrate the applied use of chemosystematics are welcome. In contrast, studies solely employing macromolecular phylogenetic techniques (gene sequences, RAPD studies etc.) will be considered out of scope. Discouraged are manuscripts that report known or new compounds from a single source taxon without addressing a systematic hypothesis. Also considered out of scope are studies using outdated and hard to reproduce macromolecular techniques such as RAPDs in combination with standard chemosystematic techniques such as GC-FID and GC-MS.
期刊最新文献
Isolation and antimicrobial characterisation of a new biflavonoid glycoside from the leaves of Campylospermum reticulatum Chemical constituents from the root of Bistorta suffulta (Maxim.) H. Gross and their chemotaxonomic significance Chemotaxonomic significance of dipeptides and flavonoids in the whole plants of Euphorbia dentata Michx Antibacterial metabolites from Paecilomyces niveus and their chemophenetic significance Chemical constituents of the yellow oyster mushroom (Pleurotus citrinopileatus)
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1