The first report of structural analysis of a nucleic acid using crystals grown in space.

IF 1.1 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS Acta crystallographica. Section F, Structural biology communications Pub Date : 2025-03-01 Epub Date: 2025-02-12 DOI:10.1107/S2053230X25000810
Shin Ando, Moena Takahashi, Jiro Kondo
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Abstract

For the success of structure-based drug design, three-dimensional structures solved by X-ray crystallography at atomic resolution are mandatory. In order to obtain high-quality single crystals with strong diffraction power, crystallization under microgravity conditions has been attempted for proteins. Since nucleic acid duplexes have chemical, structural and crystallographic characteristics that differ from those of globular proteins, such as intermolecular repulsion due to negative charge and molecular and crystallographic anisotropies, it is interesting to investigate whether microgravity crystallization improves the crystal growth of nucleic acids. However, to our knowledge there has been only one report on nucleic acid crystallization in a microgravity environment, and there have been no reports of successful structural analysis. Here, we conducted the crystallization of a DNA/RNA heteroduplex in space. The heteroduplex was successfully crystallized in a microgravity environment, and the size and appearance of the crystals were improved compared with control experiments conducted on Earth. Although the effect of the counter-diffusion method is likely to be more significant than the effect of microgravity in this study, we were able to analyze the structure at a higher resolution (1.4 Å) than our previously reported crystal structure (1.9 Å).

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利用在太空中生长的晶体对核酸进行结构分析的第一份报告。
对于基于结构的药物设计的成功,在原子分辨率下用x射线晶体学解决三维结构是必不可少的。为了获得高质量、强衍射能力的单晶,人们尝试在微重力条件下对蛋白质进行结晶。由于核酸双链具有不同于球状蛋白的化学、结构和晶体学特征,如负电荷引起的分子间排斥以及分子和晶体学各向异性,因此研究微重力结晶是否能促进核酸的晶体生长是一项有趣的研究。然而,据我们所知,在微重力环境下进行核酸结晶的报道仅有一例,并没有成功进行结构分析的报道。在这里,我们在空间中进行了DNA/RNA异双工的结晶。异质双晶在微重力环境下成功结晶,晶体的尺寸和外观都比在地球上进行的对照实验有所改善。尽管在本研究中,反扩散方法的影响可能比微重力的影响更显著,但我们能够以更高的分辨率(1.4 Å)分析结构,而不是我们之前报道的晶体结构(1.9 Å)。
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来源期刊
Acta crystallographica. Section F, Structural biology communications
Acta crystallographica. Section F, Structural biology communications BIOCHEMICAL RESEARCH METHODSBIOCHEMISTRY &-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
1.90
自引率
0.00%
发文量
95
期刊介绍: Acta Crystallographica Section F is a rapid structural biology communications journal. Articles on any aspect of structural biology, including structures determined using high-throughput methods or from iterative studies such as those used in the pharmaceutical industry, are welcomed by the journal. The journal offers the option of open access, and all communications benefit from unlimited free use of colour illustrations and no page charges. Authors are encouraged to submit multimedia content for publication with their articles. Acta Cryst. F has a dedicated online tool called publBio that is designed to make the preparation and submission of articles easier for authors.
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