Metabolic Engineering of E. coli for Enhanced Diols Production from Acetate.

IF 3.9 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS ACS Synthetic Biology Pub Date : 2025-04-18 Epub Date: 2025-03-18 DOI:10.1021/acssynbio.4c00839
Luca Ricci, Xuecong Cen, Yuexuan Zu, Giacomo Antonicelli, Zhen Chen, Debora Fino, Fabrizio C Pirri, Gregory Stephanopoulos, Benjamin M Woolston, Angela Re
{"title":"Metabolic Engineering of <i>E. coli</i> for Enhanced Diols Production from Acetate.","authors":"Luca Ricci, Xuecong Cen, Yuexuan Zu, Giacomo Antonicelli, Zhen Chen, Debora Fino, Fabrizio C Pirri, Gregory Stephanopoulos, Benjamin M Woolston, Angela Re","doi":"10.1021/acssynbio.4c00839","DOIUrl":null,"url":null,"abstract":"<p><p>Effective employment of renewable carbon sources is highly demanded to develop sustainable biobased manufacturing. Here, we developed <i>Escherichia coli</i> strains to produce 2,3-butanediol and acetoin (collectively referred to as diols) using acetate as the sole carbon source by stepwise metabolic engineering. When tested in fed-batch experiments, the strain overexpressing the entire acetate utilization pathway was found to consume acetate at a 15% faster rate (0.78 ± 0.05 g/g/h) and to produce a 35% higher diol titer (1.16 ± 0.01 g/L) than the baseline diols-producing strain. Moreover, singularly overexpressing the genes encoding alternative acetate uptake pathways as well as alternative isoforms of genes in the malate-to-pyruvate pathway unveiled that leveraging <i>ackA-pta</i> and <i>maeA</i> is more effective in enhancing acetate consumption and diols production, compared to <i>acs</i> and <i>maeB</i>. Finally, the increased substrate consumption rate and diol production obtained in flask-based experiments were confirmed in bench-scale bioreactors operated in fed-batch mode. Consequently, the highest titer of 1.56 g/L achieved in this configuration increased by over 30% compared to the only other similar effort carried out so far.</p>","PeriodicalId":26,"journal":{"name":"ACS Synthetic Biology","volume":" ","pages":"1204-1219"},"PeriodicalIF":3.9000,"publicationDate":"2025-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012870/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Synthetic Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1021/acssynbio.4c00839","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/3/18 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

Abstract

Effective employment of renewable carbon sources is highly demanded to develop sustainable biobased manufacturing. Here, we developed Escherichia coli strains to produce 2,3-butanediol and acetoin (collectively referred to as diols) using acetate as the sole carbon source by stepwise metabolic engineering. When tested in fed-batch experiments, the strain overexpressing the entire acetate utilization pathway was found to consume acetate at a 15% faster rate (0.78 ± 0.05 g/g/h) and to produce a 35% higher diol titer (1.16 ± 0.01 g/L) than the baseline diols-producing strain. Moreover, singularly overexpressing the genes encoding alternative acetate uptake pathways as well as alternative isoforms of genes in the malate-to-pyruvate pathway unveiled that leveraging ackA-pta and maeA is more effective in enhancing acetate consumption and diols production, compared to acs and maeB. Finally, the increased substrate consumption rate and diol production obtained in flask-based experiments were confirmed in bench-scale bioreactors operated in fed-batch mode. Consequently, the highest titer of 1.56 g/L achieved in this configuration increased by over 30% compared to the only other similar effort carried out so far.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
提高醋酸酯生产二醇的大肠杆菌代谢工程研究。
有效利用可再生碳源是发展可持续生物基制造业的迫切要求。本研究以乙酸酯为唯一碳源,采用逐步代谢工程的方法,培养了生产2,3-丁二醇和乙醇(统称二醇)的大肠杆菌菌株。在批量补料实验中,发现过表达整个醋酸利用途径的菌株消耗醋酸酯的速度比基线产二醇菌株快15%(0.78±0.05 g/g/h),产生的二醇滴度(1.16±0.01 g/L)提高35%。此外,单一过表达编码替代醋酸盐摄取途径的基因以及苹果酸到丙酮酸途径中替代异构体的基因表明,与acs和maeB相比,利用ackA-pta和maeA在促进醋酸盐消耗和二醇产生方面更有效。最后,在烧瓶实验中获得的底物消耗率和二醇产量的增加在加料间歇模式下的实验规模生物反应器中得到了证实。因此,与迄今为止进行的唯一其他类似努力相比,在这种配置中实现的最高滴度为1.56 g/L增加了30%以上。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
CiteScore
8.00
自引率
10.60%
发文量
380
审稿时长
6-12 weeks
期刊介绍: The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism. Topics may include, but are not limited to: Design and optimization of genetic systems Genetic circuit design and their principles for their organization into programs Computational methods to aid the design of genetic systems Experimental methods to quantify genetic parts, circuits, and metabolic fluxes Genetic parts libraries: their creation, analysis, and ontological representation Protein engineering including computational design Metabolic engineering and cellular manufacturing, including biomass conversion Natural product access, engineering, and production Creative and innovative applications of cellular programming Medical applications, tissue engineering, and the programming of therapeutic cells Minimal cell design and construction Genomics and genome replacement strategies Viral engineering Automated and robotic assembly platforms for synthetic biology DNA synthesis methodologies Metagenomics and synthetic metagenomic analysis Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction Gene optimization Methods for genome-scale measurements of transcription and metabolomics Systems biology and methods to integrate multiple data sources in vitro and cell-free synthetic biology and molecular programming Nucleic acid engineering.
期刊最新文献
Functional and Mechanistic Characterization of VacPT, a Novel cis-Prenyltransferase from Vibrio alginolyticus. Multifunctional Roles and Microbial Production Bottlenecks of Ergothioneine. Side-by-Side Systematic Characterization of Novel FPs in Budding Yeast. Modular Expression of Botryococcus braunii Genes Enhances Isoprenoid Production in the Diatom Phaeodactylum tricornutum. Directed Evolution of Glutamate Dehydrogenase for Oxaloacetate Amination and Biosynthesis of Aspartate-Derived Chemicals.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1