Attention-guided multiple instance learning for COPD identification: To combine the intensity and morphology

IF 5.3 2区 医学 Q1 ENGINEERING, BIOMEDICAL Biocybernetics and Biomedical Engineering Pub Date : 2023-07-01 DOI:10.1016/j.bbe.2023.06.004
Yanan Wu , Shouliang Qi , Jie Feng , Runsheng Chang , Haowen Pang , Jie Hou , Mengqi Li , Yingxi Wang , Shuyue Xia , Wei Qian
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Abstract

Chronic obstructive pulmonary disease (COPD) is a complex and multi-component respiratory disease. Computed tomography (CT) images can characterize lesions in COPD patients, but the image intensity and morphology of lung components have not been fully exploited. Two datasets (Dataset 1 and 2) comprising a total of 561 subjects were obtained from two centers. A multiple instance learning (MIL) method is proposed for COPD identification. First, randomly selected slices (instances) from CT scans and multi-view 2D snapshots of the 3D airway tree and lung field extracted from CT images are acquired. Then, three attention-guided MIL models (slice-CT, snapshot-airway, and snapshot-lung-field models) are trained. In these models, a deep convolution neural network (CNN) is utilized for feature extraction. Finally, the outputs of the above three MIL models are combined using logistic regression to produce the final prediction. For Dataset 1, the accuracy of the slice-CT MIL model with 20 instances was 88.1%. The backbone of VGG-16 outperformed Alexnet, Resnet18, Resnet26, and Mobilenet_v2 in feature extraction. The snapshot-airway and snapshot-lung-field MIL models achieved accuracies of 89.4% and 90.0%, respectively. After the three models were combined, the accuracy reached 95.8%. The proposed model outperformed several state-of-the-art methods and afforded an accuracy of 83.1% for the external dataset (Dataset 2). The proposed weakly supervised MIL method is feasible for COPD identification. The effective CNN module and attention-guided MIL pooling module contribute to performance enhancement. The morphology information of the airway and lung field is beneficial for identifying COPD.

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注意引导多实例学习识别COPD:将强度与形态学相结合
慢性阻塞性肺疾病(COPD)是一种复杂的多组分呼吸系统疾病。计算机断层扫描(CT)图像可以表征慢性阻塞性肺病患者的病变,但图像强度和肺成分的形态尚未得到充分利用。两个数据集(数据集1和数据集2)共561名受试者,来自两个中心。提出了一种基于多实例学习(MIL)的慢阻肺识别方法。首先,从CT扫描中随机选择切片(实例),并从CT图像中提取三维气道树和肺场的多视图二维快照。然后,训练了三种注意力引导的MIL模型(切片- ct,快照-气道和快照-肺场模型)。在这些模型中,使用深度卷积神经网络(CNN)进行特征提取。最后,使用逻辑回归将上述三种MIL模型的输出组合以产生最终预测。对于数据集1,包含20个实例的切片ct MIL模型的准确率为88.1%。VGG-16的主干在特征提取方面优于Alexnet、Resnet18、Resnet26和Mobilenet_v2。快照气道和快照长场MIL模型的准确率分别为89.4%和90.0%。三种模型组合后,准确率达到95.8%。所提出的模型优于几种最先进的方法,并为外部数据集(数据集2)提供83.1%的准确率。所提出的弱监督MIL方法对于COPD识别是可行的。有效的CNN模块和注意引导的MIL池模块有助于提高性能。气道和肺野的形态学信息有利于COPD的鉴别。
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来源期刊
CiteScore
16.50
自引率
6.20%
发文量
77
审稿时长
38 days
期刊介绍: Biocybernetics and Biomedical Engineering is a quarterly journal, founded in 1981, devoted to publishing the results of original, innovative and creative research investigations in the field of Biocybernetics and biomedical engineering, which bridges mathematical, physical, chemical and engineering methods and technology to analyse physiological processes in living organisms as well as to develop methods, devices and systems used in biology and medicine, mainly in medical diagnosis, monitoring systems and therapy. The Journal''s mission is to advance scientific discovery into new or improved standards of care, and promotion a wide-ranging exchange between science and its application to humans.
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