Nina Baldy, Nicolas Simon, Viktor Jirsa, Meysam Hashemi
{"title":"Hierarchical Bayesian pharmacometrics analysis of Baclofen for alcohol use disorder","authors":"Nina Baldy, Nicolas Simon, Viktor Jirsa, Meysam Hashemi","doi":"10.1088/2632-2153/acf6aa","DOIUrl":null,"url":null,"abstract":"Alcohol use disorder (AUD), also called alcohol dependence, is a major public health problem, affecting almost 10% of the world’s population. Baclofen, as a selective GABAB receptor agonist, has emerged as a promising drug for the treatment of AUD. However, the inter-trial, inter-individual and residual variability in drug concentration over time in a population of patients with AUD is unknown. In this study, we use a hierarchical Bayesian workflow to estimate the parameters of a pharmacokinetic (PK) population model from Baclofen administration to patients with AUD. By monitoring various convergence diagnostics, the probabilistic methodology is first validated on synthetic longitudinal datasets and then applied to infer the PK model parameters based on the clinical data that were retrospectively collected from outpatients treated with oral Baclofen. We show that state-of-the-art advances in automatic Bayesian inference using self-tuning Hamiltonian Monte Carlo (HMC) algorithms provide accurate and decisive predictions on Baclofen plasma concentration at both individual and group levels. Importantly, leveraging the information in prior provides faster computation, better convergence diagnostics, and substantially higher out-of-sample prediction accuracy. Moreover, the root mean squared error as a measure of within-sample predictive accuracy can be misleading for model evaluation, whereas the fully Bayesian information criteria correctly select the true data generating parameters. This study points out the capability of non-parametric Bayesian estimation using adaptive HMC sampling methods for easy and reliable estimation in clinical settings to optimize dosing regimens and efficiently treat AUD.","PeriodicalId":33757,"journal":{"name":"Machine Learning Science and Technology","volume":" ","pages":""},"PeriodicalIF":6.3000,"publicationDate":"2023-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Machine Learning Science and Technology","FirstCategoryId":"101","ListUrlMain":"https://doi.org/10.1088/2632-2153/acf6aa","RegionNum":2,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE","Score":null,"Total":0}
引用次数: 0
Abstract
Alcohol use disorder (AUD), also called alcohol dependence, is a major public health problem, affecting almost 10% of the world’s population. Baclofen, as a selective GABAB receptor agonist, has emerged as a promising drug for the treatment of AUD. However, the inter-trial, inter-individual and residual variability in drug concentration over time in a population of patients with AUD is unknown. In this study, we use a hierarchical Bayesian workflow to estimate the parameters of a pharmacokinetic (PK) population model from Baclofen administration to patients with AUD. By monitoring various convergence diagnostics, the probabilistic methodology is first validated on synthetic longitudinal datasets and then applied to infer the PK model parameters based on the clinical data that were retrospectively collected from outpatients treated with oral Baclofen. We show that state-of-the-art advances in automatic Bayesian inference using self-tuning Hamiltonian Monte Carlo (HMC) algorithms provide accurate and decisive predictions on Baclofen plasma concentration at both individual and group levels. Importantly, leveraging the information in prior provides faster computation, better convergence diagnostics, and substantially higher out-of-sample prediction accuracy. Moreover, the root mean squared error as a measure of within-sample predictive accuracy can be misleading for model evaluation, whereas the fully Bayesian information criteria correctly select the true data generating parameters. This study points out the capability of non-parametric Bayesian estimation using adaptive HMC sampling methods for easy and reliable estimation in clinical settings to optimize dosing regimens and efficiently treat AUD.
期刊介绍:
Machine Learning Science and Technology is a multidisciplinary open access journal that bridges the application of machine learning across the sciences with advances in machine learning methods and theory as motivated by physical insights. Specifically, articles must fall into one of the following categories: advance the state of machine learning-driven applications in the sciences or make conceptual, methodological or theoretical advances in machine learning with applications to, inspiration from, or motivated by scientific problems.