Bio-Stamp: Simple Tool for Routine Biological Data Analysis

Peter T. Habib, A. Alsamman, A. Hamwieh
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引用次数: 1

Abstract

The massive extension in biological data induced a need for user-friendly bioinformatics tools could be used for routine biological data manipulation. Bio-Stamp is a simple analytical software implements variety of tools to perform common data analysis on different biological data types and databases. Bio-Stamp provide general aspects of data analysis such as handling nucleotide data, fetching different data formats information, NGS quality control, data visualization, performing multiple sequence alignment and sequence BLAST. These tools accept common biological data formats and produce humanreadable output files could be stored on local computer machines. Bio-Stamp has a user-friendly graphical user interface to simplify massive biological data analysis and consume less memory and processing power. Bio-Stamp source code was written through Python programming language which provides less memory usage and initial start-up time. Bio-Stamp is free and open source software, where its code could be modified, extended or integrated in different bioinformatics pipelines.
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Bio-Stamp:常规生物数据分析的简单工具
生物数据的大量扩展引起了对用户友好的生物信息学工具的需求,这些工具可用于常规的生物数据操作。Bio-Stamp是一款简单的分析软件,实现了多种工具,可以对不同的生物数据类型和数据库执行常见的数据分析。Bio-Stamp提供数据分析的一般方面,如处理核苷酸数据,获取不同的数据格式信息,NGS质量控制,数据可视化,执行多个序列比对和序列BLAST。这些工具接受常见的生物数据格式,并产生人类可读的输出文件,这些文件可以存储在本地计算机上。Bio-Stamp具有用户友好的图形用户界面,可简化大量生物数据分析,并消耗更少的内存和处理能力。Bio-Stamp源代码是通过Python编程语言编写的,它提供了更少的内存使用和初始启动时间。Bio-Stamp是一款免费的开源软件,其代码可以被修改、扩展或集成到不同的生物信息学管道中。
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