Cellpackexplorer: Interactive model building for volumetric data of complex cells

Q2 Engineering Computers and Graphics: X Pub Date : 2019-12-01 Epub Date: 2019-10-04 DOI:10.1016/j.cagx.2019.100010
Magdalena Schwarzl , Ludovic Autin , Graham Johnson , Thomas Torsney-Weir , Torsten Möller
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引用次数: 3

Abstract

In this paper, we describe cellPACKexplorer, a system designed to help developers of cellPACK find errors in and improve their algorithm. cellPACKexplorer focuses on visualizing the effects of cellPACK recipe parameters on the final packing output. We found that the developers have two different methods for understanding the output, numerical and visual, depending on their background. We designed cellPACKexplorer with a flexible interface to support both types of users. We evaluated our tool through case studies and questionnaires. Novice users were able to create cell models with cellPACK and explore the behavior of different parameters. Further, expert users discovered an error in the code and were able to locate the problem quickly with our new analysis tool. We conclude with a discussion of the implications of our findings in the wider visualization community.

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Cellpackexplorer:复杂细胞体积数据的交互式模型构建
在本文中,我们描述了cellPACKexplorer,一个旨在帮助cellPACK开发人员发现算法错误并改进其算法的系统。cellPACKexplorer侧重于可视化cellPACK配方参数对最终包装输出的影响。我们发现开发人员有两种不同的方法来理解输出,数字和视觉,这取决于他们的背景。我们设计了具有灵活界面的cellPACKexplorer,以支持这两种类型的用户。我们通过案例研究和问卷调查来评估我们的工具。新手用户可以使用cellPACK创建细胞模型,并探索不同参数的行为。此外,专家用户发现了代码中的错误,并能够使用我们的新分析工具快速定位问题。最后,我们讨论了我们的发现对更广泛的可视化社区的影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
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来源期刊
Computers and Graphics: X
Computers and Graphics: X Engineering-Engineering (all)
CiteScore
3.30
自引率
0.00%
发文量
0
审稿时长
20 weeks
期刊最新文献
Editorial Board A kernel for multi-parameter persistent homology Clipping simple polygons with degenerate intersections Cellpackexplorer: Interactive model building for volumetric data of complex cells Real-time neural network prediction for handling two-hands mutual occlusions
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