An in silico study on inhibitability of Baloxavir marboxil, Baricitinib, Galidesivir, Nitazoxanide, and Oseltamivir against SARS‐CoV‐2

IF 1.3 Q3 CHEMISTRY, MULTIDISCIPLINARY Vietnam Journal of Chemistry Pub Date : 2022-05-17 DOI:10.1002/vjch.202100145
Thanh Q. Bui, Nguyen Thi Thanh Hai, Tran Thi Ai My, Nguyen Ho Vu Phong, N. Nhan, P. Quy, N. D. Nguyen, N. Nhung
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Abstract

Abstract Baloxavir marboxil (D1), Baricitinib (D2), Galidesivir (D3), Nitazoxanide (D4), and Oseltamivir (D5) are well‐known performing broad‐spectrum activity against a variety of viruses, thus holding high potentiality towards SARS‐CoV‐2. Quantum properties were examined using density functional theory (DFT). The inhibitability of the drugs towards Angiotensin‐converting enzyme 2 (ACE2) and SARS‐CoV‐2 main protease (6LU7) was evaluated by molecular docking simulation, while their bio‐compatibility was justified by physicochemical properties obtained from QSARIS‐based analysis in reference to Lipinski's rule of five. Quantum analysis suggests that the compounds are highly favourable for intermolecular interaction towards protein structures. Given ligand‐ACE2 systems, the inhibitory effectiveness follows the order D3‐ACE2 > D4‐ACE2 > D2‐ACE2 > D5‐ACE2 > D1‐ACE2; and the corresponding order for ligand‐6LU7 systems is D2‐6LU7 > D4‐6LU7 > D3‐6LU7 > D5‐6LU7 > D1‐6LU7. Galidesivir is predicted as the most effective inhibitor towards both targeted protein structures (DSaverage ‐13.1 kcal.mol‐1) and the most bio‐compatible molecule (Mass 264.9 amu; LogP ‐0.9; Polarisability 26.8 Å3). The theoretical screening suggests all drugs, especially Galidesivir (D3), promising for treatment of SARS‐CoV‐2 infection and encourages in‐related clinical trials.
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Baloxavir marboxil、Baricitinib、Galidesivir、Nitazoxanide和Oseltamivir对SARS - CoV - 2的抑制作用的计算机实验研究
Baloxavir marboxil (D1), Baricitinib (D2), Galidesivir (D3), Nitazoxanide (D4)和Oseltamivir (D5)是众所周知的对多种病毒具有广谱活性的药物,因此对SARS - CoV - 2具有很高的潜力。利用密度泛函理论(DFT)研究了量子特性。通过分子对接模拟评估了药物对血管紧张素转换酶2 (ACE2)和SARS - CoV - 2主蛋白酶(6LU7)的抑制作用,并通过基于QSARIS的理化性质分析(参考Lipinski的五法则)验证了药物的生物相容性。量子分析表明,这些化合物对蛋白质结构的分子间相互作用非常有利。在配体- ACE2体系中,抑制效果依次为D3‐ACE2 > D4‐ACE2 > D2‐ACE2 > D5‐ACE2 > D1‐ACE2;配体- 6LU7体系的顺序为D2‐6LU7 > D4‐6LU7 > D3‐6LU7 > D5‐6LU7 > D1‐6LU7。Galidesivir被预测为最有效的靶向蛋白结构抑制剂(d平均- 13.1 kcal.mol - 1)和最具生物相容性的分子(质量264.9 amu;LogP量0.9;极化率26.8 Å3)。理论上的筛选表明,所有药物,特别是Galidesivir (D3),都有希望治疗SARS - CoV - 2感染,并鼓励相关的临床试验。
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来源期刊
Vietnam Journal of Chemistry
Vietnam Journal of Chemistry CHEMISTRY, MULTIDISCIPLINARY-
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1.70
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