识别自闭症谱系障碍中与免疫渗透和铁代谢相关的亚群。

IF 2.8 4区 医学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Neuroscience Pub Date : 2024-01-18 DOI:10.1007/s12031-023-02179-y
Wenyan Huang, Zhenni Liu, Ziling Li, Si Meng, Yuhang Huang, Min Gao, Ning Zhong, Sujuan Zeng, Lijing Wang, Wanghong Zhao
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引用次数: 0

摘要

自闭症谱系障碍(ASD)是一种普遍存在的神经发育障碍,其症状和预后范围广泛。有效的治疗需要了解这种差异性。自闭症谱系障碍儿童的认知和免疫发育可能取决于铁平衡。本研究采用机器学习模型,重点研究铁代谢枢纽基因,以识别 ASD 亚群并描述免疫浸润模式。本研究从 GEO 数据库中获得了 97 个对照组样本和 148 个 ASD 样本。差异表达基因(DEG)和铁代谢基因集合实现了25个基因的交叉。无监督聚类分析根据与铁代谢相关的 25 个基因确定了 ASD 患者的分子亚群。我们评估了基因本体(GO)、京都基因和基因组百科全书(KEGG)通路富集、基因组变异分析(GSVA)和免疫浸润分析,以比较铁代谢亚型的影响。我们采用机器学习来识别亚型预测枢纽基因,并利用训练集和验证集来评估基因亚型预测的准确性。ASD可分为两个铁代谢分子集群。不同群组之间的代谢富集途径不同。免疫浸润显示,群组之间存在免疫学差异。群组2的免疫学得分更高,免疫细胞更多,表明免疫反应更强。机器学习筛选发现 SELENBP1 和 CAND1 是 ASD 铁代谢信号通路中的重要基因。这些基因在大脑中表达,其AUC值超过0.8,意味着具有显著的预测能力。本研究引入了铁代谢信号通路指标来预测 ASD 亚型。ASD与免疫细胞浸润和铁代谢紊乱有关。
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Identification of Immune Infiltration and Iron Metabolism–Related Subgroups in Autism Spectrum Disorder

Autism spectrum disorder (ASD) is a prevalent neurodevelopmental disorder with a broad spectrum of symptoms and prognoses. Effective therapy requires understanding this variability. ASD children’s cognitive and immunological development may depend on iron homoeostasis. This study employs a machine learning model that focuses on iron metabolism hub genes to identify ASD subgroups and describe immune infiltration patterns. A total of 97 control and 148 ASD samples were obtained from the GEO database. Differentially expressed genes (DEGs) and an iron metabolism gene collection achieved the intersection of 25 genes. Unsupervised cluster analysis determined molecular subgroups in individuals with ASD based on 25 genes related to iron metabolism. We assessed gene ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, gene set variation analysis (GSVA), and immune infiltration analysis to compare iron metabolism subtype effects. We employed machine learning to identify subtype-predicting hub genes and utilized both training and validation sets to assess gene subtype prediction accuracy. ASD can be classified into two iron-metabolizing molecular clusters. Metabolic enrichment pathways differed between clusters. Immune infiltration showed that clusters differed immunologically. Cluster 2 had better immunological scores and more immune cells, indicating a stronger immune response. Machine learning screening identified SELENBP1 and CAND1 as important genes in ASD’s iron metabolism signaling pathway. These genes express in the brain and have AUC values over 0.8, implying significant predictive power. The present study introduces iron metabolism signaling pathway indicators to predict ASD subtypes. ASD is linked to immune cell infiltration and iron metabolism disorders.

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来源期刊
Journal of Molecular Neuroscience
Journal of Molecular Neuroscience 医学-神经科学
CiteScore
6.60
自引率
3.20%
发文量
142
审稿时长
1 months
期刊介绍: The Journal of Molecular Neuroscience is committed to the rapid publication of original findings that increase our understanding of the molecular structure, function, and development of the nervous system. The criteria for acceptance of manuscripts will be scientific excellence, originality, and relevance to the field of molecular neuroscience. Manuscripts with clinical relevance are especially encouraged since the journal seeks to provide a means for accelerating the progression of basic research findings toward clinical utilization. All experiments described in the Journal of Molecular Neuroscience that involve the use of animal or human subjects must have been approved by the appropriate institutional review committee and conform to accepted ethical standards.
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