{"title":"[植物精油成分气相色谱保留指数的全息图定量结构-活性关系]。","authors":"Rui Guo, Long Jiao, Zubiao Hu, Qingchen Wang, Hanbin Zhong, Mingli Jing","doi":"10.3724/SP.J.1123.2023.07011","DOIUrl":null,"url":null,"abstract":"The gas chromatography retention index (RI) is an important parameter for the identification of different types of compounds in the field of chromatographic analysis; however, the experimental collection of RI values is a extremely cumbersome process. Thus, there is an urgent need for the establishment of a simple, efficient, and accurate model for the prediction of the RI values of compounds. In this study, first, the experimental RI values for 60 plant essential oil constituents were obtained. Next, a model describing the hologram quantitative structure-activity relationship (HQSAR) between the structural properties of the essential oil constituents and their RI values was investigated and constructed. The optimal HQSAR model was established by setting the model parameters \"fragment size\", \"fragment distinction\", \"hologram length\" and \"principal components\" to \"1-4\", \"C, Ch\", \"199\", and \"4\", respectively. Finally, the predictive ability of the model was verified using external test set validation and leave-one-out cross-validation (LOO-CV). The experimental results were as follows, the root mean square error of prediction (RMSEP), predictive determination coefficient ([Formula: see text]), concordance correlation coefficient (CCC), and mean relative error (MRE) for external test set validation were 40.45, 0.984, 0.968, and 2.20%, respectively. Meanwhile, the root mean square error of cross validation (RMSECV) and MRE for LOO-CV were 72.56 and 4.17%, respectively. These findings demonstrate that the established HQSAR model has a good predictive ability and can accurately predict the RI values of plant essential oil constituents. In addition, the molecular contribution maps of the HQSAR model revealed that the RI values of aromatic compounds increase when hydroxyl groups are connected to their alkyl chains. Aliphatic compounds feature long chain alkyl groups, which can lead to an increase in RI values. The above phenomena highlight the promising application prospects of HQSAR for studying the RI values of plant essential oil constituents. Therefore, this study provides a reliable theoretical basis for predicting the RI values of other essential oil constituents.","PeriodicalId":101336,"journal":{"name":"Se pu = Chinese journal of chromatography","volume":"73 2","pages":"380-386"},"PeriodicalIF":0.0000,"publicationDate":"2024-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"[Hologram quantitative structure-activity relationship on the gas chromatographic retention index of plant essential oil constituents].\",\"authors\":\"Rui Guo, Long Jiao, Zubiao Hu, Qingchen Wang, Hanbin Zhong, Mingli Jing\",\"doi\":\"10.3724/SP.J.1123.2023.07011\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The gas chromatography retention index (RI) is an important parameter for the identification of different types of compounds in the field of chromatographic analysis; however, the experimental collection of RI values is a extremely cumbersome process. Thus, there is an urgent need for the establishment of a simple, efficient, and accurate model for the prediction of the RI values of compounds. In this study, first, the experimental RI values for 60 plant essential oil constituents were obtained. Next, a model describing the hologram quantitative structure-activity relationship (HQSAR) between the structural properties of the essential oil constituents and their RI values was investigated and constructed. The optimal HQSAR model was established by setting the model parameters \\\"fragment size\\\", \\\"fragment distinction\\\", \\\"hologram length\\\" and \\\"principal components\\\" to \\\"1-4\\\", \\\"C, Ch\\\", \\\"199\\\", and \\\"4\\\", respectively. Finally, the predictive ability of the model was verified using external test set validation and leave-one-out cross-validation (LOO-CV). The experimental results were as follows, the root mean square error of prediction (RMSEP), predictive determination coefficient ([Formula: see text]), concordance correlation coefficient (CCC), and mean relative error (MRE) for external test set validation were 40.45, 0.984, 0.968, and 2.20%, respectively. Meanwhile, the root mean square error of cross validation (RMSECV) and MRE for LOO-CV were 72.56 and 4.17%, respectively. These findings demonstrate that the established HQSAR model has a good predictive ability and can accurately predict the RI values of plant essential oil constituents. In addition, the molecular contribution maps of the HQSAR model revealed that the RI values of aromatic compounds increase when hydroxyl groups are connected to their alkyl chains. Aliphatic compounds feature long chain alkyl groups, which can lead to an increase in RI values. The above phenomena highlight the promising application prospects of HQSAR for studying the RI values of plant essential oil constituents. Therefore, this study provides a reliable theoretical basis for predicting the RI values of other essential oil constituents.\",\"PeriodicalId\":101336,\"journal\":{\"name\":\"Se pu = Chinese journal of chromatography\",\"volume\":\"73 2\",\"pages\":\"380-386\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-04-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Se pu = Chinese journal of chromatography\",\"FirstCategoryId\":\"0\",\"ListUrlMain\":\"https://doi.org/10.3724/SP.J.1123.2023.07011\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Se pu = Chinese journal of chromatography","FirstCategoryId":"0","ListUrlMain":"https://doi.org/10.3724/SP.J.1123.2023.07011","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
在色谱分析领域,气相色谱保留指数(RI)是鉴定不同类型化合物的一个重要参数;然而,RI 值的实验收集是一个极其繁琐的过程。因此,迫切需要建立一个简单、高效、准确的模型来预测化合物的 RI 值。本研究首先获得了 60 种植物精油成分的实验 RI 值。然后,研究并构建了一个描述精油成分结构特性与其 RI 值之间全息定量结构-活性关系(HQSAR)的模型。通过将模型参数 "片段大小"、"片段区别"、"全息图长度 "和 "主成分 "分别设置为 "1-4"、"C、Ch"、"199 "和 "4",建立了最佳 HQSAR 模型。最后,利用外部测试集验证和留空交叉验证(LOO-CV)验证了模型的预测能力。实验结果如下:外部测试集验证的预测均方根误差(RMSEP)、预测判定系数([公式:见正文])、一致性相关系数(CCC)和平均相对误差(MRE)分别为 40.45、0.984、0.968 和 2.20%。同时,LOO-CV 的交叉验证均方根误差(RMSECV)和平均相对误差(MRE)分别为 72.56% 和 4.17%。这些结果表明,所建立的 HQSAR 模型具有良好的预测能力,可以准确预测植物精油成分的 RI 值。此外,HQSAR 模型的分子贡献图显示,当羟基与烷基链相连时,芳香族化合物的 RI 值会增加。脂肪族化合物具有长链烷基,这也会导致 RI 值增加。上述现象凸显了 HQSAR 在研究植物精油成分 RI 值方面的广阔应用前景。因此,这项研究为预测其他精油成分的 RI 值提供了可靠的理论依据。
[Hologram quantitative structure-activity relationship on the gas chromatographic retention index of plant essential oil constituents].
The gas chromatography retention index (RI) is an important parameter for the identification of different types of compounds in the field of chromatographic analysis; however, the experimental collection of RI values is a extremely cumbersome process. Thus, there is an urgent need for the establishment of a simple, efficient, and accurate model for the prediction of the RI values of compounds. In this study, first, the experimental RI values for 60 plant essential oil constituents were obtained. Next, a model describing the hologram quantitative structure-activity relationship (HQSAR) between the structural properties of the essential oil constituents and their RI values was investigated and constructed. The optimal HQSAR model was established by setting the model parameters "fragment size", "fragment distinction", "hologram length" and "principal components" to "1-4", "C, Ch", "199", and "4", respectively. Finally, the predictive ability of the model was verified using external test set validation and leave-one-out cross-validation (LOO-CV). The experimental results were as follows, the root mean square error of prediction (RMSEP), predictive determination coefficient ([Formula: see text]), concordance correlation coefficient (CCC), and mean relative error (MRE) for external test set validation were 40.45, 0.984, 0.968, and 2.20%, respectively. Meanwhile, the root mean square error of cross validation (RMSECV) and MRE for LOO-CV were 72.56 and 4.17%, respectively. These findings demonstrate that the established HQSAR model has a good predictive ability and can accurately predict the RI values of plant essential oil constituents. In addition, the molecular contribution maps of the HQSAR model revealed that the RI values of aromatic compounds increase when hydroxyl groups are connected to their alkyl chains. Aliphatic compounds feature long chain alkyl groups, which can lead to an increase in RI values. The above phenomena highlight the promising application prospects of HQSAR for studying the RI values of plant essential oil constituents. Therefore, this study provides a reliable theoretical basis for predicting the RI values of other essential oil constituents.