Michael T. Connelly, Mary Grace Catapang, Andrea M. Quattrini
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引用次数: 0
摘要
自然历史博物馆拥有世界上最大的生物多样性藏品,是巨大的基因信息库。然而,直到最近,这些信息中的大部分仍然无法获取。新出现的技术,如历史 DNA(hDNA)分离技术和可利用降解 DNA 作为输入材料的超保守元素(UCEs)目标富集测序技术,有可能为基因组学研究打开博物馆藏品的大门。在这里,我们展示了从 90 年前采集的干燥珊瑚标本中提取的 hDNA 可用作 UCE 目标富集测序的输入材料。由此获得的序列数据可用于系统发育研究,以解决有关分类物种身份、生物地理分布和进化历史的问题。我们的研究成果为研究小组利用自然历史博物馆藏品中尚未开发的遗传信息提供了一个蓝图。
Unlocking the treasure trove: leveraging dry coral specimens for museum genomics
Natural history museums house the largest biodiversity collections in the world and represent an enormous repository of genetic information. Much of this information, however, has remained inaccessible until recently. Emerging technologies, such as techniques for isolation of historical DNA (hDNA) and target enrichment sequencing of ultraconserved elements (UCEs) that can utilize degraded DNA as input material, have the potential to unlock museum collections for genomics research. Here, we demonstrate that hDNA extracted from dried Pocillopora coral specimens, collected up to 90 yrs ago, can be used as input for UCE target enrichment sequencing. The resulting sequence data can be used in phylogenetic studies to resolve questions about taxonomic species identities, biogeographic distributions, and evolutionary histories. Our results provide a blueprint for research groups seeking to take advantage of untapped genetic information stored in natural history museum collections.
期刊介绍:
Coral Reefs, the Journal of the International Coral Reef Society, presents multidisciplinary literature across the broad fields of reef studies, publishing analytical and theoretical papers on both modern and ancient reefs. These encourage the search for theories about reef structure and dynamics, and the use of experimentation, modeling, quantification and the applied sciences.
Coverage includes such subject areas as population dynamics; community ecology of reef organisms; energy and nutrient flows; biogeochemical cycles; physiology of calcification; reef responses to natural and anthropogenic influences; stress markers in reef organisms; behavioural ecology; sedimentology; diagenesis; reef structure and morphology; evolutionary ecology of the reef biota; palaeoceanography of coral reefs and coral islands; reef management and its underlying disciplines; molecular biology and genetics of coral; aetiology of disease in reef-related organisms; reef responses to global change, and more.