短寡聚内酰胺分子内交联。

IF 1.8 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Peptide Science Pub Date : 2024-07-15 DOI:10.1002/psc.3644
Paulina Bachurska-Szpala, Rafał Chojnacki, Karolina Pulka-Ziach
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引用次数: 0

摘要

众所周知,低聚物折叠体可折叠成 2.5 螺旋,并通过三中心氢键稳定,这使得它们在构象上比肽更为坚硬。不过,溶液中的折叠倾向和构象稳定性取决于低聚物的长度以及温度、溶剂等因素。在肽领域,有许多已知的方法可以将骨架限制在折叠构象中,包括通过二硫桥钉合侧链、内酰胺形成、闭环偏合成反应等。在这项工作中,我们通过内酰胺桥连接了含有类谷氨酸和类赖氨酸残基的短寡聚糖(四个残基)侧链。所设计的寡聚糖在类 Glu 残基的位置上有所不同。接着,通过核磁共振和圆二色性研究了线性和环状化合物在原生溶剂(甲醇)中的构象特性。重要的是,研究发现,在研究条件下,较大的大环(24 元)比较小的大环(19 元)更能容忍螺旋转向。
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Intramolecular lactam cross-linking of short oligoureas

Oligourea foldamers are known to fold into 2.5-helices, stabilized by three-centered hydrogen bonds, which makes them conformationally more rigid than peptides. Nevertheless, the folding propensity and conformational stability in solution depend on the length of the oligomer, as well as the temperature, solvent, and so forth. In the peptide field, there are many approaches known for constraining the backbone in the folded conformation, including the stapling of side chains by disulfide bridges, lactam formation, ring closing metathesis reaction, and others. In this work, we linked side chains by lactam bridges of short oligoureas (four residues), containing Glu- and Lys-like residues. The designed oligoureas differed in the position of the Glu-like residue. Next, the conformational properties of linear and cyclic compounds were studied in protic solvent (methanol) by nuclear magnetic resonance and circular dichroism. Importantly, it was discovered that larger macrocycles (24-membered) are more tolerated with respect to the helical turn than smaller macrocycles (19-membered) under the studied conditions.

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来源期刊
Journal of Peptide Science
Journal of Peptide Science 生物-分析化学
CiteScore
3.40
自引率
4.80%
发文量
83
审稿时长
1.7 months
期刊介绍: The official Journal of the European Peptide Society EPS The Journal of Peptide Science is a cooperative venture of John Wiley & Sons, Ltd and the European Peptide Society, undertaken for the advancement of international peptide science by the publication of original research results and reviews. The Journal of Peptide Science publishes three types of articles: Research Articles, Rapid Communications and Reviews. The scope of the Journal embraces the whole range of peptide chemistry and biology: the isolation, characterisation, synthesis properties (chemical, physical, conformational, pharmacological, endocrine and immunological) and applications of natural peptides; studies of their analogues, including peptidomimetics; peptide antibiotics and other peptide-derived complex natural products; peptide and peptide-related drug design and development; peptide materials and nanomaterials science; combinatorial peptide research; the chemical synthesis of proteins; and methodological advances in all these areas. The spectrum of interests is well illustrated by the published proceedings of the regular international Symposia of the European, American, Japanese, Australian, Chinese and Indian Peptide Societies.
期刊最新文献
Issue Information Identification and synthesis of a long-chain antimicrobial peptide from the venom of the Liocheles australasiae scorpion. Editorial for the Special Collection "Women in Peptide Science". Impairing protein-protein interactions in an essential tRNA modification complex: An innovative antimicrobial strategy against Pseudomonas aeruginosa. Development and applications of enzymatic peptide and protein ligation.
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