PerQueue:管理复杂的动态工作流

IF 6.2 Q1 CHEMISTRY, MULTIDISCIPLINARY Digital discovery Pub Date : 2024-08-08 DOI:10.1039/D4DD00134F
Benjamin Heckscher Sjølin, William Sandholt Hansen, Armando Antonio Morin-Martinez, Martin Hoffmann Petersen, Laura Hannemose Rieger, Tejs Vegge, Juan Maria García-Lastra and Ivano E. Castelli
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引用次数: 0

摘要

工作流管理器在高效规划和执行复杂工作负载方面发挥着至关重要的作用。在计算材料发现领域,已经存在一些这样的工作流管理器,但它们的动态功能略显不足。PerQueue 工作流管理器正是对这一需求的回应。PerQueue 利用模块化动态构件在开始之前明确定义工作流,可以更好地概述工作流,同时具有充分的灵活性和高度的动态性。为了举例说明其用法,我们介绍了计算材料发现中不同规模的四个用例。这些案例包括利用密度泛函理论进行高通量筛选、利用主动学习来训练分子动力学的机器学习原子间位势,以及将该位势重新用于扩展系统的动力学蒙特卡洛模拟。最后,它还被用于主动学习加速图像分割程序,并将人纳入环路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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PerQueue: managing complex and dynamic workflows†

Workflow managers play a critical role in the efficient planning and execution of complex workloads. A handful of these already exist within the world of computational materials discovery, but their dynamic capabilities are somewhat lacking. The PerQueue workflow manager is the answer to this need. By utilizing modular and dynamic building blocks to define a workflow explicitly before starting, PerQueue can give a better overview of the workflow while allowing full flexibility and high dynamism. To exemplify its usage, we present four use cases at different scales within computational materials discovery. These encapsulate high-throughput screening with Density Functional Theory, using active learning to train a Machine-Learning Interatomic Potential with Molecular Dynamics and reusing this potential for kinetic Monte Carlo simulations of extended systems. Lastly, it is used for an active-learning-accelerated image segmentation procedure with a human-in-the-loop.

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