研究大蒜中一种酰肼生物活性成分的抗氧化潜力和机制:密度泛函理论计算、药物相似性和分子对接研究的启示

IF 3.1 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Applied Biochemistry and Biotechnology Pub Date : 2024-09-18 DOI:10.1007/s12010-024-05051-w
Joy C. Ugwu, Chioma B. Ubah, Peculiar Lawrence, Moses M. Edim, Mbim Elizabeth N, Jonathan O. Enyike, Henry O. Edet
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引用次数: 0

摘要

谷胱甘肽仍然是生命系统中最有效的抗氧化化合物之一,而肼类化合物的生物能力在文献中已有详细记载。本研究重点介绍了大蒜的植物化学成分,并利用气相色谱-质谱(GC-MS)技术分离了具有生物活性的苯甲酸、4-氯-1-(4-甲氧基苯基)酰肼(BA4C)。初步的植物化学筛选显示了生物碱、皂苷、黄酮类、单宁、萜类、甾体和酚类的存在。在计算方面,采用 B3LYP/aug-cc-PVDZ DFT 方法对化合物 BA4C 进行了优化。该化合物的光谱研究包括傅立叶变换红外光谱振动频率和振动模式分析。前沿分子轨道分析记录的能隙为 4.3391 eV;NBO 研究显示,该化合物的分子内相互作用(如 \(\uppi\)*C12 - C13 到 \(\uppi\)*C14 - C15 和 \(\uppi\)*C11 - C16 到 \(\uppi\)*C14 - C15)分别具有 246 kcal/mol 和 269 kcal/mol 的强扰动能。根据非共价相互作用的可视化,在苯基和苯环的核心处观察到了立体排斥。然而,化合物的其他区域则显示出立体排斥力和范德华力之间的显著平衡。为了进一步推断化合物 BA4C 的还原能力,研究人员发现电子高度集中在甲氧基和酰肼分子上,这表明它们具有向氧化体系提供电子的倾向。此外,ADMET 分析表明,该化合物有两个氢供体。最重要的是,该化合物能与 NADPH 脱氢酶(5V4P)和谷胱甘肽还原酶(1XAN)结合,结合能分别为 - 6.0 kcal/mol 和 - 8.0 kcal/mol,显示了相当有利的结合可行性,并能与氨基酸残基形成多个氢键。值得注意的是,BA4C 与 1XAN 的活性位点结合,这意味着该化合物具有还原氧化谷胱甘肽的能力。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Investigating the antioxidant potential and mechanism of a hydrazide bioactive component of garlic: insights from density functional theory calculations, drug-likeness and molecular docking studies

Glutathione remains one of the most efficient antioxidant compounds in living systems, and the biological abilities of hydrazides have been well documented in literature. This study highlights the phytochemical constituents of garlic and the separation of the bioactive benzoic acid, 4-chloro- 1-(4-methoxyphenyl) hydrazide (BA4C) using gas chromatography-mass spectroscopy (GC–MS) technique. Preliminary phytochemical screening reveals the presence of alkaloids, saponins, flavonoids, tannins, terpenoids, steroids and phenols. Computationally, compound BA4C was optimized using the B3LYP/aug-cc-PVDZ DFT method. Spectroscopic studies of the compound involved analysis of the vibrational FT-IR frequencies and the modes of vibrations. Frontier molecular orbitals analysis records an energy gap of 4.3391 eV; NBO studies reveal that the compound has strong perturbation energies of 246 kcal/mol and 269 kcal/mol among its intramolecular interactions such as \(\uppi\)*C12 – C13 to \(\uppi\)*C14 – C15 and \(\uppi\)*C11 – C16 to \(\uppi\)*C14 – C15, respectively. According to the visualization of non-covalent interactions, steric repulsions were observed at the core of the phenyl and benzene rings. However, other regions of the compound depict a significant balance of forces between steric repulsions and van der Waals forces. To significantly deduce the reducing power of compound BA4C, electrons were found to be highly localized at the methoxy and hydrazide moieties significantly implying their propensity to donate electrons to oxidized systems. Furthermore, ADMET analysis reveals that the compound has two hydrogen donors. Most significantly, the compound binds to NADPH dehydrogenase (5V4P) and glutathione reductase (1XAN) with binding energies of − 6.0 kcal/mol and − 8.0 kcal/mol showing considerable favourable binding feasibility as well as forming plural hydrogen bonds with the amino acid residues. Notably, BA4C was bonded at the active site of 1XAN, which implies the ability of the compound for the reduction of oxidized glutathione.

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来源期刊
Applied Biochemistry and Biotechnology
Applied Biochemistry and Biotechnology 工程技术-生化与分子生物学
CiteScore
5.70
自引率
6.70%
发文量
460
审稿时长
5.3 months
期刊介绍: This journal is devoted to publishing the highest quality innovative papers in the fields of biochemistry and biotechnology. The typical focus of the journal is to report applications of novel scientific and technological breakthroughs, as well as technological subjects that are still in the proof-of-concept stage. Applied Biochemistry and Biotechnology provides a forum for case studies and practical concepts of biotechnology, utilization, including controls, statistical data analysis, problem descriptions unique to a particular application, and bioprocess economic analyses. The journal publishes reviews deemed of interest to readers, as well as book reviews, meeting and symposia notices, and news items relating to biotechnology in both the industrial and academic communities. In addition, Applied Biochemistry and Biotechnology often publishes lists of patents and publications of special interest to readers.
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