{"title":"社论:对药物发现的硅方法和人工智能的见解:2022","authors":"J. Medina‐Franco","doi":"10.3389/fddsv.2022.1126955","DOIUrl":null,"url":null,"abstract":"Entering the third decade of the 21st Century, artificial intelligence (AI) continues to offer significant advances in drug discovery (Jiménez-Luna et al., 2021; Jayatunga et al., 2022). When used rationally beyond the hype, AI offers clear promise to advance further basic and applied research (Medina-Franco et al., 2021). At the same time, AI faces challenges to address at different levels. The present Research Topic brings together experts worldwide from industry, academic, not-for-profit, and governmental settings to openly discuss novel insights, recent advances, latest discoveries, and current challenges in the field of In silico Methods and Artificial Intelligence for Drug Discovery. From an industry point of view, DiNuzzo presents a perspective on how AI enables the modeling and simulation of biological networks to accelerate drug discovery. He emphasizes that the proper combination of the predictive capability of AI with the mechanistic knowledge of modeling and simulation is expected to provide a major contribution to the pharmaceutical industry. DiNuzzo also concludes that AI will be a key player in analyzing biological networks that will deliver substantial progress towards the improvement of drug target identification and validation, qualify potentially associated side-effects, identify the efficacy and toxicity of biomarkers, aid with hypothesis generation, optimal experimental design, and testing for disease understanding and identification of disease biomarkers. McDermott et al. discuss a platform based on AI that aids in the discovery of DNA damaging agents for ultra-rare cancer atypical teratoid rhabdoid tumors (ATRT). Specifically, the authors showed the power of using the public USA’s National Cancer Institute (NCI)’s CellMiner Cross Database and Lantern Pharma’s proprietary AI and machine learning (ML) RADR® platform to uncover biological insights and potentially new target indications for the acylfulvene derivative drugs LP-100 (Irofulven) and LP-184. Lantern’s AI and ML RADR® platform was used to develop a model to test, computationally, if LP-184 would be effective in ATRT patients. RADR® suggested that ATRT would be sensitive to LP-184, which was then validated in vitro and in vivo. Namba-Nzanguim et al. review how AI is helping to advance antiviral drug discovery in low-resourced settings. Authors shared their perspectives on the benefits, limitations, and pitfalls of AI/ML tools in the discovery of novel antivirals. Namba-Nzanguim et al. also present current and novel data sharing models, including intellectual property-preserving AI/ML. Authors concluded that AI/ML provides a cost-effective solution for developing antivirals, but AI/ML tools depend on improved access to viral assays data and better data integration protocols. Schmitz et al. OPEN ACCESS","PeriodicalId":73080,"journal":{"name":"Frontiers in drug discovery","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-01-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Editorial: Insights in silico methods and artificial intelligence for drug discovery: 2022\",\"authors\":\"J. Medina‐Franco\",\"doi\":\"10.3389/fddsv.2022.1126955\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Entering the third decade of the 21st Century, artificial intelligence (AI) continues to offer significant advances in drug discovery (Jiménez-Luna et al., 2021; Jayatunga et al., 2022). When used rationally beyond the hype, AI offers clear promise to advance further basic and applied research (Medina-Franco et al., 2021). At the same time, AI faces challenges to address at different levels. The present Research Topic brings together experts worldwide from industry, academic, not-for-profit, and governmental settings to openly discuss novel insights, recent advances, latest discoveries, and current challenges in the field of In silico Methods and Artificial Intelligence for Drug Discovery. From an industry point of view, DiNuzzo presents a perspective on how AI enables the modeling and simulation of biological networks to accelerate drug discovery. He emphasizes that the proper combination of the predictive capability of AI with the mechanistic knowledge of modeling and simulation is expected to provide a major contribution to the pharmaceutical industry. DiNuzzo also concludes that AI will be a key player in analyzing biological networks that will deliver substantial progress towards the improvement of drug target identification and validation, qualify potentially associated side-effects, identify the efficacy and toxicity of biomarkers, aid with hypothesis generation, optimal experimental design, and testing for disease understanding and identification of disease biomarkers. McDermott et al. discuss a platform based on AI that aids in the discovery of DNA damaging agents for ultra-rare cancer atypical teratoid rhabdoid tumors (ATRT). Specifically, the authors showed the power of using the public USA’s National Cancer Institute (NCI)’s CellMiner Cross Database and Lantern Pharma’s proprietary AI and machine learning (ML) RADR® platform to uncover biological insights and potentially new target indications for the acylfulvene derivative drugs LP-100 (Irofulven) and LP-184. 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引用次数: 0
摘要
进入21世纪的第三个十年,人工智能(AI)继续在药物发现方面取得重大进展(Jiménez-Luna等人,2021;Jayatunga等人,2022)。当在炒作之外合理使用时,人工智能为进一步推进基础和应用研究提供了明确的承诺(Medina Franco et al.,2021)。与此同时,人工智能面临着不同层面的挑战。本研究主题汇集了来自世界各地行业、学术界、非营利组织和政府机构的专家,公开讨论药物发现的计算机方法和人工智能领域的新见解、最新进展、最新发现和当前挑战。从行业的角度来看,DiNuzzo介绍了人工智能如何使生物网络的建模和模拟加速药物发现。他强调,人工智能的预测能力与建模和模拟的机械知识的适当结合有望为制药行业做出重大贡献。DiNuzzo还得出结论,人工智能将在分析生物网络方面发挥关键作用,该网络将在改进药物靶点识别和验证、鉴定潜在的相关副作用、识别生物标志物的疗效和毒性、帮助产生假设、优化实验设计、,以及测试疾病理解和疾病生物标志物的鉴定。McDermott等人讨论了一个基于人工智能的平台,该平台有助于发现超恶性癌症非典型畸胎瘤样横纹肌样肿瘤(ATRT)的DNA损伤剂。具体而言,作者展示了使用美国国家癌症研究所(NCI)的CellMiner交叉数据库和Lantern Pharma专有的人工智能和机器学习(ML)RADR®平台来揭示酰基富烯衍生物药物LP-100(Irofulven)和LP-184的生物学见解和潜在新靶点适应症的力量。Lantern的AI和ML RADR®平台用于开发一个模型,通过计算测试LP-184是否对ATRT患者有效。RADR®表明ATRT对LP-184敏感,随后在体外和体内进行了验证。Namba Nzanguim等人综述了人工智能如何在资源匮乏的环境中帮助推进抗病毒药物的发现。作者分享了他们对AI/ML工具在发现新型抗病毒药物方面的好处、局限性和陷阱的看法。Namba Nzanguim等人还介绍了当前和新的数据共享模型,包括保护知识产权的AI/ML。作者得出结论,AI/ML为开发抗病毒药物提供了一种具有成本效益的解决方案,但AI/ML工具依赖于改进对病毒检测数据的访问和更好的数据集成协议。Schmitz等人开放访问
Editorial: Insights in silico methods and artificial intelligence for drug discovery: 2022
Entering the third decade of the 21st Century, artificial intelligence (AI) continues to offer significant advances in drug discovery (Jiménez-Luna et al., 2021; Jayatunga et al., 2022). When used rationally beyond the hype, AI offers clear promise to advance further basic and applied research (Medina-Franco et al., 2021). At the same time, AI faces challenges to address at different levels. The present Research Topic brings together experts worldwide from industry, academic, not-for-profit, and governmental settings to openly discuss novel insights, recent advances, latest discoveries, and current challenges in the field of In silico Methods and Artificial Intelligence for Drug Discovery. From an industry point of view, DiNuzzo presents a perspective on how AI enables the modeling and simulation of biological networks to accelerate drug discovery. He emphasizes that the proper combination of the predictive capability of AI with the mechanistic knowledge of modeling and simulation is expected to provide a major contribution to the pharmaceutical industry. DiNuzzo also concludes that AI will be a key player in analyzing biological networks that will deliver substantial progress towards the improvement of drug target identification and validation, qualify potentially associated side-effects, identify the efficacy and toxicity of biomarkers, aid with hypothesis generation, optimal experimental design, and testing for disease understanding and identification of disease biomarkers. McDermott et al. discuss a platform based on AI that aids in the discovery of DNA damaging agents for ultra-rare cancer atypical teratoid rhabdoid tumors (ATRT). Specifically, the authors showed the power of using the public USA’s National Cancer Institute (NCI)’s CellMiner Cross Database and Lantern Pharma’s proprietary AI and machine learning (ML) RADR® platform to uncover biological insights and potentially new target indications for the acylfulvene derivative drugs LP-100 (Irofulven) and LP-184. Lantern’s AI and ML RADR® platform was used to develop a model to test, computationally, if LP-184 would be effective in ATRT patients. RADR® suggested that ATRT would be sensitive to LP-184, which was then validated in vitro and in vivo. Namba-Nzanguim et al. review how AI is helping to advance antiviral drug discovery in low-resourced settings. Authors shared their perspectives on the benefits, limitations, and pitfalls of AI/ML tools in the discovery of novel antivirals. Namba-Nzanguim et al. also present current and novel data sharing models, including intellectual property-preserving AI/ML. Authors concluded that AI/ML provides a cost-effective solution for developing antivirals, but AI/ML tools depend on improved access to viral assays data and better data integration protocols. Schmitz et al. OPEN ACCESS