具有脱氧雪腐镰刀菌烯醇降解相关基因的模式菌株白灵草属S02T的全基因组序列

IF 1.3 4区 生物学 Q4 GENETICS & HEREDITY Marine genomics Pub Date : 2022-08-01 DOI:10.1016/j.margen.2022.100969
Pu-Yu Hao , Hui-Rong Li , Wei Luo , Ren Xu , Yin-Xin Zeng
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引用次数: 1

摘要

Devosia属的成员以其降解脱氧雪腐镰刀菌烯醇(DON)的能力而闻名。从白令海沉积物中分离到模式菌株Devosia beringensis S02T(=JCM 33772=CTCC AB 2019343),并于2021年鉴定。然而,D.beringensis S02T的基因组序列尚不清楚,这使对该菌株在海洋沉积物中的功能和生态作用的探索变得复杂。beringensis S02T基因组包含一条4048765bp的染色体,G+C含量为63.84mol%。在该基因组中发现了参与DON降解的潜在基因。此外,基因组中还注释了参与多糖降解的多个基因,包括琼脂糖、几丁质、卡拉胶、果胶、淀粉和木聚糖。这些发现表明了菌株S02T用于DON降解的潜力及其在海洋沉积物碳循环中的生态功能。
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Complete genome sequence of Devosia beringensis S02T, a type strain with genes involved in deoxynivalenol degradation

Members of the genus Devosia are known for their abilities to degrade deoxynivalenol (DON). The type strain Devosia beringensis S02T (= JCM 33772 = CCTCC AB 2019343) was isolated from sediment of the Bering Sea and identified in 2021. However, the genome sequence of D. beringensis S02T remains unclear, which complicates the exploration into the function and ecological role of this strain in marine sediment. The genome of D. beringensis S02T contained a 4,048,765 bp chromosome with a G + C content of 63.84 mol%. Potential genes involved in DON degradation were found in the genome. In addition, multiple genes involved in polysaccharide degradation, including agarose, chitin, carrageen, pectate, starch, and xylan, were also annotated in the genome. These findings indicated the potential of strain S02T to be used for DON degradation and its ecological function in the carbon cycle in marine sediment.

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来源期刊
Marine genomics
Marine genomics 生物-遗传学
CiteScore
3.60
自引率
5.30%
发文量
50
审稿时长
29 days
期刊介绍: The journal publishes papers on all functional and evolutionary aspects of genes, chromatin, chromosomes and (meta)genomes of marine (and freshwater) organisms. It deals with new genome-enabled insights into the broader framework of environmental science. Topics within the scope of this journal include: • Population genomics and ecology • Evolutionary and developmental genomics • Comparative genomics • Metagenomics • Environmental genomics • Systems biology More specific topics include: geographic and phylogenomic characterization of aquatic organisms, metabolic capacities and pathways of organisms and communities, biogeochemical cycles, genomics and integrative approaches applied to microbial ecology including (meta)transcriptomics and (meta)proteomics, tracking of infectious diseases, environmental stress, global climate change and ecosystem modelling.
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