Research on the construction of a knowledge graph for tomato leaf pests and diseases based on the named entity recognition model.

IF 4.1 2区 生物学 Q1 PLANT SCIENCES Frontiers in Plant Science Pub Date : 2024-11-07 eCollection Date: 2024-01-01 DOI:10.3389/fpls.2024.1482275
Kun Wang, Yuyuan Miao, Xu Wang, Yuze Li, Fuzhong Li, Haiyan Song
{"title":"Research on the construction of a knowledge graph for tomato leaf pests and diseases based on the named entity recognition model.","authors":"Kun Wang, Yuyuan Miao, Xu Wang, Yuze Li, Fuzhong Li, Haiyan Song","doi":"10.3389/fpls.2024.1482275","DOIUrl":null,"url":null,"abstract":"<p><strong>Introduction: </strong>Tomato leaf pests and diseases pose a significant threat to the yield and quality of Q6 tomatoes, highlighting the necessity for comprehensive studies on effective control methods.</p><p><strong>Methods: </strong>Current control measures predominantly rely on experience and manual observation, hindering the integration of multi-source data. To address this, we integrated information resources related to tomato leaf pests and diseases from agricultural standards documents, knowledge websites, and relevant literature. Guided by domain experts, we preprocessed this data to construct a sample set.</p><p><strong>Results: </strong>We utilized the Named Entity Recognition (NER) model ALBERT-BiLSTM-CRF to conduct end-to-end knowledge extraction experiments, which outperformed traditional models such as 1DCNN-CRF and BiLSTM-CRF, achieving a recall rate of 95.03%. The extracted knowledge was then stored in the Neo4j graph database, effectively visualizing the internal structure of the knowledge graph.</p><p><strong>Discussion: </strong>We developed a digital diagnostic system for tomato leaf pests and diseases based on the knowledge graph, enabling graphical management and visualization of pest and disease knowledge. The constructed knowledge graph offers insights for controlling tomato leaf pests and diseases and provides new research directions for pest control in other crops.</p>","PeriodicalId":12632,"journal":{"name":"Frontiers in Plant Science","volume":"15 ","pages":"1482275"},"PeriodicalIF":4.1000,"publicationDate":"2024-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11578693/pdf/","citationCount":"0","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Plant Science","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3389/fpls.2024.1482275","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q1","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0

Abstract

Introduction: Tomato leaf pests and diseases pose a significant threat to the yield and quality of Q6 tomatoes, highlighting the necessity for comprehensive studies on effective control methods.

Methods: Current control measures predominantly rely on experience and manual observation, hindering the integration of multi-source data. To address this, we integrated information resources related to tomato leaf pests and diseases from agricultural standards documents, knowledge websites, and relevant literature. Guided by domain experts, we preprocessed this data to construct a sample set.

Results: We utilized the Named Entity Recognition (NER) model ALBERT-BiLSTM-CRF to conduct end-to-end knowledge extraction experiments, which outperformed traditional models such as 1DCNN-CRF and BiLSTM-CRF, achieving a recall rate of 95.03%. The extracted knowledge was then stored in the Neo4j graph database, effectively visualizing the internal structure of the knowledge graph.

Discussion: We developed a digital diagnostic system for tomato leaf pests and diseases based on the knowledge graph, enabling graphical management and visualization of pest and disease knowledge. The constructed knowledge graph offers insights for controlling tomato leaf pests and diseases and provides new research directions for pest control in other crops.

查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
基于命名实体识别模型的番茄叶病虫害知识图谱构建研究。
引言番茄叶片病虫害对 Q6 番茄的产量和质量构成重大威胁,因此有必要对有效的防治方法进行全面研究:方法:目前的防治措施主要依赖经验和人工观察,阻碍了多源数据的整合。为此,我们整合了农业标准文件、知识网站和相关文献中与番茄叶片病虫害有关的信息资源。在领域专家的指导下,我们对这些数据进行了预处理,构建了一个样本集:我们利用命名实体识别(NER)模型 ALBERT-BiLSTM-CRF 进行了端到端知识提取实验,其性能优于 1DCNN-CRF 和 BiLSTM-CRF 等传统模型,召回率达到 95.03%。提取的知识随后被存储在 Neo4j 图数据库中,有效地实现了知识图谱内部结构的可视化:我们开发了基于知识图谱的番茄叶片病虫害数字诊断系统,实现了病虫害知识的图形化管理和可视化。所构建的知识图谱为番茄叶片病虫害的防治提供了启示,也为其他作物的病虫害防治提供了新的研究方向。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 去求助
来源期刊
Frontiers in Plant Science
Frontiers in Plant Science PLANT SCIENCES-
CiteScore
7.30
自引率
14.30%
发文量
4844
审稿时长
14 weeks
期刊介绍: In an ever changing world, plant science is of the utmost importance for securing the future well-being of humankind. Plants provide oxygen, food, feed, fibers, and building materials. In addition, they are a diverse source of industrial and pharmaceutical chemicals. Plants are centrally important to the health of ecosystems, and their understanding is critical for learning how to manage and maintain a sustainable biosphere. Plant science is extremely interdisciplinary, reaching from agricultural science to paleobotany, and molecular physiology to ecology. It uses the latest developments in computer science, optics, molecular biology and genomics to address challenges in model systems, agricultural crops, and ecosystems. Plant science research inquires into the form, function, development, diversity, reproduction, evolution and uses of both higher and lower plants and their interactions with other organisms throughout the biosphere. Frontiers in Plant Science welcomes outstanding contributions in any field of plant science from basic to applied research, from organismal to molecular studies, from single plant analysis to studies of populations and whole ecosystems, and from molecular to biophysical to computational approaches. Frontiers in Plant Science publishes articles on the most outstanding discoveries across a wide research spectrum of Plant Science. The mission of Frontiers in Plant Science is to bring all relevant Plant Science areas together on a single platform.
期刊最新文献
Phytochemical profiling, antioxidant, enzymatic inhibitory, and antibacterial activities of Wigandia ecuadorensis. Research on the construction of a knowledge graph for tomato leaf pests and diseases based on the named entity recognition model. RNA-seq and metabolomic analyses of beneficial plant phenol biochemical pathways in red alder. Study on the correlation between alkaloids and tastes of Coptis Rhizome from four species based on UHPLC-QQQ-MS/MS combined with electronic tongue technique. Suspended soils enrich local forest floor soils during the rainy season in a tropical monsoon rainforest of Hainan Island, South China.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1