Molecular Odor Prediction Using Olfactory Receptor Information.

IF 3.1 4区 医学 Q3 CHEMISTRY, MEDICINAL Molecular Informatics Pub Date : 2025-03-01 DOI:10.1002/minf.202400274
Yuta Wakutsu, Hiromasa Kaneko
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Abstract

In fragrance development, the framework development process is a bottleneck from the perspective of labor, cost, and human resource development. Odors vary greatly depending on the structure and functional groups of the molecule. Although odor has been predicted from only the structure of molecules, its practical application remains elusive. In this study, we developed a model for predicting the odor of molecules that have only small differences in structure. Focusing on the mechanism of human olfaction, we divided the mechanism into three levels and constructed three models: a classification model that predicts the presence or absence of binding between molecules and olfactory receptors, a regression model that predicts the strength of binding, and a classification model that predicts the presence or absence of odor based on the strength of binding. Olfactory receptors were used as descriptors to discriminate between similar molecular odors. Our models predicted odor differences between some similar molecules, including optical isomers.

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利用嗅觉受体信息进行分子气味预测。
在香氛开发中,从人力、成本和人力资源开发的角度来看,框架开发过程是一个瓶颈。气味的变化很大程度上取决于分子的结构和官能团。虽然人们仅从分子结构就能预测气味,但其实际应用仍然难以捉摸。在这项研究中,我们开发了一个模型来预测结构上只有微小差异的分子的气味。针对人类嗅觉的机制,我们将其分为三个层次,构建了预测分子与嗅觉受体之间是否结合的分类模型、预测结合强度的回归模型和基于结合强度预测气味存在与否的分类模型。嗅觉受体被用作描述符来区分相似的分子气味。我们的模型预测了一些类似分子之间的气味差异,包括光学异构体。
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来源期刊
Molecular Informatics
Molecular Informatics CHEMISTRY, MEDICINAL-MATHEMATICAL & COMPUTATIONAL BIOLOGY
CiteScore
7.30
自引率
2.80%
发文量
70
审稿时长
3 months
期刊介绍: Molecular Informatics is a peer-reviewed, international forum for publication of high-quality, interdisciplinary research on all molecular aspects of bio/cheminformatics and computer-assisted molecular design. Molecular Informatics succeeded QSAR & Combinatorial Science in 2010. Molecular Informatics presents methodological innovations that will lead to a deeper understanding of ligand-receptor interactions, macromolecular complexes, molecular networks, design concepts and processes that demonstrate how ideas and design concepts lead to molecules with a desired structure or function, preferably including experimental validation. The journal''s scope includes but is not limited to the fields of drug discovery and chemical biology, protein and nucleic acid engineering and design, the design of nanomolecular structures, strategies for modeling of macromolecular assemblies, molecular networks and systems, pharmaco- and chemogenomics, computer-assisted screening strategies, as well as novel technologies for the de novo design of biologically active molecules. As a unique feature Molecular Informatics publishes so-called "Methods Corner" review-type articles which feature important technological concepts and advances within the scope of the journal.
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