机制和结构洞察到EstS1酯酶:一个有效的广谱邻苯二甲酸二酯降解酶

IF 4.4 2区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Structure Pub Date : 2024-12-05 DOI:10.1016/j.str.2024.11.006
Shalja Verma, Shweta Choudhary, Kamble Amith Kumar, Jai Krishna Mahto, Anil Kumar Vamsi K, Ishani Mishra, Vellanki Bhanu Prakash, Debabrata Sircar, Shailly Tomar, Ashwani Kumar Sharma, Jitin Singla, Pravindra Kumar
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引用次数: 0

摘要

邻苯二甲酸二酯是重要的污染物,具有内分泌干扰作用。虽然已确定某些细菌酯酶可将邻苯二甲酸二酯降解为单酯,但其结构和机制特征仍未得到充分研究。在这里,我们强调了来自嗜酸硫杆菌DSM10332的耐热耐ph EstS1酯酶的潜力,通过结合生物物理和生化方法,以及载子形式的高分辨率EstS1晶体结构,结合底物、产物和它们的类似物来阐明其机制。催化通道分别介导底物和产物的进入和排出。集中的Ser-His-Asp三联体通过双向乒乓机制进行催化,形成四面体中间体。诱变分析表明,Met207Ala突变消除了DEHP在活性位点的结合,证实了其在支持催化中的重要作用。这些发现强调了EstS1作为推进邻苯二甲酸二酯生物降解技术的一个有前途的工具。
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Mechanistic and structural insights into EstS1 esterase: A potent broad-spectrum phthalate diester degrading enzyme
Phthalate diesters are important pollutants and act as endocrine disruptors. While certain bacterial esterases have been identified for phthalate diesters degradation to monoesters, their structural and mechanistic characteristics remain largely unexplored. Here, we highlight the potential of the thermostable and pH-tolerant EstS1 esterase from Sulfobacillus acidophilus DSM10332 to degrade high molecular weight bis(2-ethylhexyl) phthalate (DEHP) by combining biophysical and biochemical approaches along with high-resolution EstS1 crystal structures of the apo form and with bound substrates, products, and their analogs to elucidate its mechanism. The catalytic tunnel mediates entry and exit of the substrate and product, respectively. The centralized Ser-His-Asp triad performs catalysis by a bi-bi ping-pong mechanism, forming a tetrahedral intermediate. Mutagenesis analysis showed that the Met207Ala mutation abolished DEHP binding at the active site, confirming its essential role in supporting catalysis. These findings underscore EstS1 as a promising tool for advancing technologies aimed at phthalate diesters biodegradation.
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来源期刊
Structure
Structure 生物-生化与分子生物学
CiteScore
8.90
自引率
1.80%
发文量
155
审稿时长
3-8 weeks
期刊介绍: Structure aims to publish papers of exceptional interest in the field of structural biology. The journal strives to be essential reading for structural biologists, as well as biologists and biochemists that are interested in macromolecular structure and function. Structure strongly encourages the submission of manuscripts that present structural and molecular insights into biological function and mechanism. Other reports that address fundamental questions in structural biology, such as structure-based examinations of protein evolution, folding, and/or design, will also be considered. We will consider the application of any method, experimental or computational, at high or low resolution, to conduct structural investigations, as long as the method is appropriate for the biological, functional, and mechanistic question(s) being addressed. Likewise, reports describing single-molecule analysis of biological mechanisms are welcome. In general, the editors encourage submission of experimental structural studies that are enriched by an analysis of structure-activity relationships and will not consider studies that solely report structural information unless the structure or analysis is of exceptional and broad interest. Studies reporting only homology models, de novo models, or molecular dynamics simulations are also discouraged unless the models are informed by or validated by novel experimental data; rationalization of a large body of existing experimental evidence and making testable predictions based on a model or simulation is often not considered sufficient.
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