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AHP4 attenuates cytokinin signalling in the phloem companion cells to control root growth under osmotic stress 在渗透胁迫下,AHP4减弱韧皮部伴随细胞中的细胞分裂素信号以控制根的生长。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-25 DOI: 10.1111/tpj.70684
Elina Chrysanthou, Shannon Ward, Kartika Sari, John Vaughan-Hirsch, Aditi N. Borkar, Rahul Bhosale, Anthony Bishopp

Cytokinins regulate diverse aspects of plant development. They are perceived by membrane-localised receptors that transmit a signal to nuclear-localised response regulators via the Histidine Phosphotransfer proteins (HPts). These HPts can be divided into two classes: authentic HPts (AHPs), which positively regulate cytokinin signalling, and pseudo HPts (PHPs), which inhibit it. Whilst four of the five Arabidopsis AHPs form a well-conserved monophyletic clade, AHP4 evolved separately and is more closely related to the monocot PHPs than to the dicot AHPs. AHP4's role in cytokinin signalling has been ambiguous; in some cases, it has been shown to act as a positive regulator, whilst in others, it acts negatively. Here, we propose that AHP4 act like a dimmer switch to dampen cytokinin output. Under optimal growth conditions, AHP4 is expressed at a low level in the phloem companion cells and has little effect on either cytokinin signalling or plant development. However, AHP4 expression is induced under osmotic stress, and under this condition, we show a novel role for AHP4 in reducing cytokinin signalling in the phloem and maintaining primary root growth. We propose that AHP4 fine-tunes responses to the osmotic environment by attenuating cytokinin signalling.

细胞分裂素调节植物发育的各个方面。它们被膜定位的受体感知,并通过组氨酸磷酸转移蛋白(HPts)向核定位的反应调节因子传递信号。这些hpt可以分为两类:真正的hpt (AHPs),积极调节细胞分裂素信号传导,和伪hpt (PHPs),抑制它。虽然5个拟南芥AHPs中有4个形成了一个保守良好的单系进化分支,但AHP4是单独进化的,与单子叶AHPs的关系比与双子叶AHPs的关系更密切。AHP4在细胞分裂素信号传导中的作用一直不明确;在某些情况下,它被证明是一个积极的调节器,而在其他情况下,它起着消极的作用。在这里,我们提出AHP4就像一个调光开关来抑制细胞分裂素的输出。在最佳生长条件下,AHP4在韧皮部伴随细胞中表达水平较低,对细胞分裂素信号传导和植物发育影响不大。然而,AHP4的表达是在渗透胁迫下诱导的,在这种条件下,我们发现AHP4在减少韧皮部细胞分裂素信号传导和维持初生根生长方面发挥了新的作用。我们提出AHP4通过减弱细胞分裂素信号传导来微调对渗透环境的反应。
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引用次数: 0
Leaf morpho-anatomical traits regulate the differential responses of stomatal and mesophyll conductance to drought in rice and wheat 叶片形态解剖性状调控着水稻和小麦气孔导度和叶肉导度对干旱的差异响应。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-24 DOI: 10.1111/tpj.70673
Yuhan Yang, Yingchao Li, Xiaolin Ma, Zhipeng Teng, Lu Yan, Shuoqi Chang, Shaobing Peng, Peng Hou, Yong Li

Drought poses a significant threat to global rice production, and a comparative study between rice and wheat serves as an essential approach to unravel the mechanisms relating to drought tolerance. This study examined the differential responses of gas exchange, leaf hydraulic conductance, and leaf morpho-anatomical traits in Shanyou 63 (Oryza sativa) and Yannong 19 (Triticum aestivum). Our findings revealed that rice photosynthesis was more sensitive to drought than wheat, primarily due to greater reductions in stomatal conductance (gs) and mesophyll conductance (gm). The larger reduction of gs in rice was related to a more substantial decrease in leaf hydraulic conductance, which was driven by more severe downsizing of leaf xylem conduits and the thickened mestome cell walls. The more severe depression of gm in rice under drought was associated with the decreased chloroplast surface area exposed to intercellular airspaces and cell wall porosity (φ/τ) as well as the thickened mesophyll cell walls (Tcw-mes). The thicker Tcw-mes and the decreased φ/τ may be related to the biosynthesis and deposition of cellulose and hemicellulose. This study provides evidence that the regulation of cell wall components and the retention of leaf morphological and anatomical structures play a critical role in maintaining a high photosynthetic capacity under drought stress.

干旱对全球水稻生产构成重大威胁,水稻和小麦的比较研究是揭示抗旱机制的重要途径。研究了汕优63号(Oryza sativa)和烟农19号(Triticum aestivum)在气体交换、叶片水力导度和叶片形态解剖性状方面的差异反应。研究结果表明,水稻光合作用对干旱的敏感性高于小麦,这主要是由于气孔导度(gs)和叶肉导度(gm)的降低幅度更大。水稻的gs降低幅度较大,与叶片水力导度降低幅度较大有关,这是由于叶片木质部导管缩小幅度较大和叶端细胞壁增厚所致。水稻在干旱条件下的转基因抑制程度越严重,与叶绿体暴露于细胞间隙和细胞壁孔隙度(φ/τ)的表面积减少以及叶肉细胞壁(Tcw-mes)增厚有关。Tcw-mes变厚和φ/τ降低可能与纤维素和半纤维素的生物合成和沉积有关。本研究证明,干旱胁迫下,细胞壁组分的调控和叶片形态解剖结构的保持在维持高光合能力中起着关键作用。
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引用次数: 0
Seed-type vacuolar processing enzymes recognize the 619th asparagine residue to posttranslationally cleave the HMW-GS 1Dy10-m619SN allele 种子型液泡加工酶识别第619个天冬酰胺残基,翻译后切割HMW-GS 1Dy10-m619SN等位基因。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-24 DOI: 10.1111/tpj.70697
Yan Wang, Yang Li, Zhenru Guo, Qingcheng Li, Linlin Zhou, Xin Chen, Jie Deng, Xin Yuan, Lirun Chen, Qian Zha, Li Kong, Yongfang Wan, Malcolm J. Hawkesford, Yunfeng Jiang, Yazhou Zhang, Qiang Xu, Qiantao Jiang, Jirui Wang, Guoyue Chen, Jian Ma, Youliang Zheng, Yuming Wei, Qing Chen, Pengfei Qi

High molecular weight glutenin subunits (HMW-GSs) are critical grain storage proteins in wheat, which govern its unique processing quality. A HMW-GS 1Dy10 allele variant (1Dy10-m619SN), carrying a serine-to-asparagine substitution at the 619th residue, undergoes partial posttranslational cleavage. This modification leads to improved cookie-making quality. However, the enzymes mediating this cleavage remain unknown. In this study, we identified vacuolar processing enzymes (VPEs) as candidates for 1Dy10-m619SN processing using TurboID-based proximity labeling and RNA-seq analysis. In vitro cleavage assays confirmed that VPEs catalyzed 1Dy10-m619SN cleavage. Phylogenic analysis revealed that there are two seed-type VPEs in wheat, TaVPEI and TaVPEII, with TaVPEI being further subdivided into TaVPEI-1, TaVPEI-2, and TaVPEI-3. Despite sharing conserved catalytic domains, these isoforms display distinct temporal expression patterns, with TaVPEI-1 expression showing the strongest correlation with the posttranslational cleavage of 1Dy10-m619SN. TaVPEI-1 protein is localized to the vacuole, the well-known deposition site for HMW-GSs. Overexpression of TaVPEI-1 in wheat enhances the 1Dy10-m619SN cleavage. Collectively, these findings demonstrate that the seed-type VPEs in wheat are responsible for the posttranslational cleavage of 1Dy10-m619SN, which provides new insights into the molecular basis of wheat's unique processing quality.

高分子量谷蛋白亚基(HMW-GSs)是小麦中重要的贮藏蛋白,决定着小麦独特的加工品质。HMW-GS 1Dy10等位基因变体(1Dy10- m619sn)在第619个残基上携带丝氨酸到天冬酰胺的替换,发生部分翻译后裂解。这种改进提高了饼干的制作质量。然而,介导这种分裂的酶仍然未知。在这项研究中,我们利用基于turboid的接近标记和RNA-seq分析,确定了液泡加工酶(VPEs)作为1Dy10-m619SN加工的候选酶。体外裂解实验证实,VPEs催化了1Dy10-m619SN的裂解。系统发育分析表明,小麦中存在TaVPEI和TaVPEII两种种子型vpe,其中TaVPEI可进一步细分为TaVPEI-1、TaVPEI-2和TaVPEI-3。尽管共享保守的催化结构域,但这些同工异构体表现出不同的时间表达模式,其中TaVPEI-1表达与1Dy10-m619SN翻译后裂解的相关性最强。TaVPEI-1蛋白定位于液泡,这是众所周知的HMW-GSs沉积部位。TaVPEI-1在小麦中的过表达促进了1Dy10-m619SN的裂解。综上所述,这些发现表明小麦种子型vpe参与了1Dy10-m619SN的翻译后裂解,为小麦独特加工品质的分子基础提供了新的认识。
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引用次数: 0
Contrasting growth responses of alpine Rhododendron shrubs are mediated by topography on the Tibetan Plateau 青藏高原高寒杜鹃花灌木的生长响应受地形调节
IF 2.1 3区 农林科学 Q2 FORESTRY Pub Date : 2026-01-24 DOI: 10.1007/s00468-026-02728-z
Ruixuan Li, Xiang Chen, Ping Ren, Yafeng Wang, J. Julio Camarero

Key message

Divergent shrub growth-temperature relationships were observed in adjacent shrubline sites under similar climates, demonstrating that site-specific factors such as topographic conditions modulate shrub growth sensitivity to climate warming.

Abstract

Alpine shrubs are expected to show enhanced growth and upslope shifts as climate keeps warming. However, climate-growth relationships are often contingent on site conditions. Herein, the climate–growth relationships of alpine R. aganniphum shrubs were investigated at a dry (LZ45) and a wet (GB45) site located at an elevation of above 4500 m on the southeastern Tibetan Plateau. Ring-width data were collected from 50 Rhododendron shrubs, and two standardized ring-width chronologies spanning 143 and 178 years were developed for LZ45 and GB45 sites, respectively. Minimum winter temperature was identified as the most significant climatic constraint of shrub radial growth at the dry site, whereas warmer summer conditions enhanced growth at the wet site. Results of linear mixed-effects models demonstrated that combining climatic and topographic factors improved the explained variance of shrub growth at both sites. A lower value of soil moisture and topographic wetness index in the dry site resulted in a lower growth confirming the importance of water shortage in that site. By synthesizing findings on alpine Rhododendron shrubs across several regions, this study highlights the topographical modulation of growth responses of alpine shrubs to climate change. Alpine Rhododendron shrubs in dry sites may be at an increasing risk of growth decline under warmer and drier future climate conditions, with negative implications for alpine ecosystems. Our study illustrates how regional climate and site conditions should be carefully accounted when studying alpine woody communities.

在相似气候条件下,邻近灌丛样地灌木生长与温度的关系存在差异,表明地形条件等特定样地因素调节了灌木生长对气候变暖的敏感性。随着气候的持续变暖,高松灌木将呈现出生长加速和上坡移动的趋势。然而,气候增长关系往往取决于现场条件。以青藏高原东南部海拔4500 m以上的干湿样地(LZ45)和湿样地(GB45)为研究对象,研究了高寒灌丛的气候-生长关系。利用50株杜鹃花灌木的环宽数据,分别在LZ45和GB45建立了143年和178年的标准环宽年表。在干旱区,冬季最低温度是影响灌木径向生长的最重要气候因素,而在湿地,夏季较暖的气候条件促进了灌木径向生长。线性混合效应模型的结果表明,气候和地形因子的结合提高了两个站点灌木生长的解释方差。干燥立地土壤湿度和地形湿度指数较低,导致生长较低,证实了该立地缺水的重要性。通过对不同地区高山杜鹃花灌木的综合研究,揭示了气候变化对高山杜鹃花灌木生长响应的地形调节机制。未来气候条件变暖、变干,旱地高寒杜鹃灌木生长下降的风险可能会增加,对高寒生态系统产生负面影响。我们的研究表明,在研究高山木本群落时,应该仔细考虑区域气候和场地条件。
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引用次数: 0
Transposable elements as modulators of homoeologous gene expression in bread wheat: lessons from the pan-transcriptome era 转座因子作为面包小麦同源基因表达的调节剂:来自泛转录组时代的教训。
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-24 DOI: 10.1111/tpj.70679
Liel Gribun, Khalil Kashkush

Bread wheat (Triticum aestivum L.) is an allohexaploid (AABBDD) whose three ancestral subgenomes generate complex patterns of gene regulation. Most genes exist as homoeologous triads, and the relative expression balance among copies, homoeolog expression bias, is central to polyploid evolution and adaptation. Recent high-quality assemblies, long-read transcriptomics, and pan-transcriptome resources have uncovered extensive cultivar-specific transcriptional diversity. Because transposable elements (TEs) compose over 80% of the wheat genome, they are prime candidates for shaping subgenome asymmetry. We synthesize recent pan-genomic and transcriptomic evidence, including genome-wide associations between TE insertions and genome-specific expression, and propose a unifying framework in which TEs modulate homoeolog expression by donating cis-regulatory sequences, altering chromatin states, producing small RNAs, and driving structural variation. We discuss experimental and computational challenges for establishing causality, and outline future functional and translational strategies to leverage TE-associated regulatory diversity in wheat breeding.

面包小麦(Triticum aestivum L.)是一种异源六倍体(AABBDD),其三个祖先亚基因组产生复杂的基因调控模式。大多数基因以同源三联体的形式存在,拷贝间的相对表达平衡、同源表达偏倚是多倍体进化和适应的核心。最近的高质量组装,长读转录组学和泛转录组资源揭示了广泛的品种特异性转录多样性。由于转座因子(te)占小麦基因组的80%以上,它们是形成亚基因组不对称的主要候选者。我们综合了最近的泛基因组和转录组学证据,包括TE插入与基因组特异性表达之间的全基因组关联,并提出了一个统一的框架,其中TE通过提供顺式调控序列、改变染色质状态、产生小rna和驱动结构变异来调节同源性表达。我们讨论了建立因果关系的实验和计算挑战,并概述了未来在小麦育种中利用te相关调控多样性的功能和转化策略。
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引用次数: 0
Differences in photosystem II activity and carbon allocation during photomixotrophic growth in distinct wild-type strains of Synechocystis sp. PCC 6803 聚囊藻PCC 6803不同野生型菌株光营养生长过程中光系统II活性和碳分配的差异
IF 5.7 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-24 DOI: 10.1111/tpj.70683
Tuomas Huokko, Emil Sporre, Bradley Koch, Priyanka Pradeep Patil, Laura Wey, Lauri Nikkanen, Pornpan Napaumpaiporn, Olli Virtanen, Michal Hubácek, Natalia Kulik, Josef Komenda, Elton Hudson, Imre Vass, Yagut Allahverdiyeva

The regulation of photosynthetic electron transport during photomixotrophic growth in cyanobacteria remains incompletely understood. In this study, we characterized four wild-type strains (WT 1–4) of Synechocystis sp. PCC 6803 and observed distinct strain-specific differences in photosystem II (PSII) function under photomixotrophic conditions. Specifically, WT 1 and WT 2 exhibited near-complete inhibition of electron transfer from QA to QB following approximately 3 days of glucose supplementation, possibly mediated by binding of the small PSII-associated protein, Psb28-2, and resulting in a metabolic shift toward photoheterotrophy. Observed electron transport blockage was associated with changes in the abundances of various photosynthetic proteins. However, the structural integrity of both Photosystems appeared to be largely preserved. Such stabilization may be driven by a transient downregulation of linear electron transport to prevent overreduction of the electron transport chain under photomixotrophy. In contrast, WT 3 and WT 4 maintained photomixotrophic growth throughout the experiment but exhibited slower growth rates than WT 1 and WT 2. Although glucose uptake was slower in WT 1 and WT 2, both strains accumulated more glycogen than WT 3 and WT 4, suggesting divergent regulation of carbon allocation and storage metabolism. Together, these findings highlight the capacity of cyanobacterial strains to deploy distinct metabolic strategies to optimize photosynthetic function, carbon assimilation, and energy storage under photomixotrophic conditions.

蓝藻光营养生长过程中光合电子传递的调控尚不完全清楚。在本研究中,我们对4个野生型聚囊藻(Synechocystis sp. PCC 6803)菌株(WT 1-4)进行了表征,并观察了在光养条件下不同菌株在光系统II (PSII)功能上的差异。具体来说,在大约3天的葡萄糖补充后,WT 1和WT 2表现出从QA -到QB的电子转移几乎完全抑制,可能是通过结合psii相关的小蛋白Psb28-2介导的,并导致代谢向光异养转变。观察到的电子传递阻滞与各种光合蛋白丰度的变化有关。然而,两个光系统的结构完整性似乎在很大程度上得到了保存。这种稳定可能是由线性电子传递的短暂下调驱动的,以防止光变性下电子传递链的过度还原。相比之下,WT 3和WT 4在整个实验过程中都保持了光养生长,但其生长速度比WT 1和WT 2慢。虽然WT 1和WT 2的葡萄糖摄取速度较慢,但它们积累的糖原都比WT 3和WT 4多,这表明它们的碳分配和储存代谢调控存在差异。总之,这些发现强调了蓝藻菌株在光营养条件下部署不同代谢策略以优化光合功能、碳同化和能量储存的能力。
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引用次数: 0
Electrospun carbon-TiO₂ composite nanofibers for environmental photoelectrocatalysis 电纺碳-二氧化钛复合纳米纤维用于环境光电催化
IF 3.261 Pub Date : 2026-01-24 DOI: 10.1016/j.jpap.2026.100278
Simon P. Hager , Bettina Herbig , Valentin Müller , Antonia K. Dreßel , Katharina E. Dehm , Karl Mandel , Susanne Wintzheimer , Ryan W. Crisp
Electrospun nanofiber composites are a promising platform for integrating photocatalytic and electrocatalytic functionalities in environmental remediation technologies. In this study, we report the fabrication, structural characterization, and photo(electro)catalytic evaluation of polyacrylonitrile (PAN)-derived carbon nanofibers embedded with TiO2 nanoparticles (NPs). The NPs are synthesized via two distinct routes: a hydrothermally assisted sol-gel process (SG) and commercial flame-pyrolyzed P25. Aiming for a direct comparison, both fiber types were produced using identical electrospinning conditions and were thermally converted into conductive NP-carbon composites. The fibers containing TiO2 from the SG process exhibit a more homogeneous TiO2 distribution, reduced agglomeration, higher surface area (200 m²/g vs. 78 m²/g), and superior photocatalytic degradation rates of a model organic contaminant, rhodamine B (RhB), outperforming P25-containing fibers even when normalized by surface area. Photoelectrochemical measurements further demonstrate enhanced reaction kinetics under a −0.55 V bias compared to photocatalytic or electrocatalytic conditions alone, confirming the viability of these nanofiber composites for integrated photoelectrocatalysis. These findings highlight the benefits of combining SG-NP synthesis with electrospinning to develop flexible high-performance materials for pollutant degradation applications.
静电纺丝纳米纤维复合材料是一种融合光催化和电催化功能的环境修复技术。在这项研究中,我们报道了包埋二氧化钛纳米粒子(NPs)的聚丙烯腈(PAN)衍生碳纳米纤维的制备、结构表征和光(电)催化评价。NPs通过两种不同的途径合成:水热辅助溶胶-凝胶法(SG)和商用火焰热解P25。为了进行直接比较,在相同的静电纺丝条件下生产了两种纤维,并将其热转化为导电的np -碳复合材料。SG工艺中含有TiO2的纤维表现出更均匀的TiO2分布,更少的团聚,更高的表面积(200 m²/g对78 m²/g),以及对模型有机污染物罗丹明B (RhB)的优越光催化降解率,即使按表面积归一化,也优于含有p25的纤维。与光催化或电催化条件相比,光电化学测量进一步证明了- 0.55 V偏压下的反应动力学增强,证实了这些纳米纤维复合材料用于集成光电催化的可行性。这些发现强调了将SG-NP合成与静电纺丝相结合,开发用于污染物降解应用的柔性高性能材料的好处。
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引用次数: 0
Polypropylene Microplastics Bidirectionally Modulate Copper Toxicity in Jasminum sambac by Rewiring Glutathione and Porphyrin-Photosynthetic Networks. 聚丙烯微塑料通过重组谷胱甘肽和卟啉-光合网络双向调节茉莉铜毒性。
IF 6.3 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-23 DOI: 10.1111/pce.70407
Baiyang He, Yuteng Xue, Xinzhuan Yao, Chao Luo, Litang Lu

Copper is essential yet phytotoxic when excessive, and polypropylene microplastics (PP-MPs) are increasingly co-occurring with Cu in soils, but their mechanistic impact on woody ornamentals remains unclear. Jasminum sambac in Cu spiked soil across a PP-MPs gradient and found a dose-dependent, non-monotonic modulation of Cu toxicity. PP-MPs accumulated on root surfaces, shifting Cu partitioning along the soil-root-shoot axis: an intermediate load reduced shoot Cu and translocation, lowered membrane lipid peroxidation, and was accompanied by coordinated adjustment of glutathione redox metabolism (GSR, G6PD, PGD) and GSH turnover (GGT, GGCT). Transcriptomics indicated that moderate PP-MPs partially restored genes for chlorophyll biosynthesis (CHLI/CHLH/CHLM) and light-harvesting (Lhcb1/2), aligning with improved photosynthesis and chlorophyll a/b balance. However, high dose PP-MPs weakened this protection: root Cu rebounded, antioxidant enzymes (SOD/POD) dropped below control levels, PetC expression remained low, and chlorophyll a/b imbalance reoccurred. At a higher load, protection weakened root Cu rebounded, SOD and POD fell below control levels, PetC associated electron transport remained constrained, and Chl a/b imbalance re-emerged. The data suggest that PP-MPs act as both an interfacial sorptive buffer and a regulator of redox photosynthetic networks, informing risk assessment of metal-microplastic co‑contamination in soils.

铜是必需的,但过量时具有植物毒性,聚丙烯微塑料(PP-MPs)越来越多地与土壤中的铜共存,但它们对木本观赏植物的机制影响尚不清楚。茉莉sambac在含铜土壤中跨PP-MPs梯度,并发现了铜毒性的剂量依赖,非单调调节。PP-MPs在根表面积累,改变了Cu沿土壤-根尖轴的分配:中间负荷减少了茎部Cu和转运,降低了膜脂过氧化,并伴有谷胱甘肽氧化还原代谢(GSR, G6PD, PGD)和谷胱甘肽转化(GGT, GGCT)的协调调节。转录组学表明,适度的PP-MPs部分恢复了叶绿素生物合成(CHLI/CHLH/CHLM)和光收获(Lhcb1/2)基因,与改善光合作用和叶绿素a/b平衡一致。然而,高剂量的PP-MPs削弱了这种保护作用:根Cu反弹,抗氧化酶(SOD/POD)下降到对照水平以下,PetC表达仍然很低,叶绿素a/b再次失衡。在较高负荷下,保护减弱的根Cu反弹,SOD和POD低于对照水平,PetC相关的电子传递仍然受限,Chl a/b失衡再次出现。这些数据表明,PP-MPs既是界面吸附缓冲剂,也是氧化还原光合网络的调节剂,为土壤中金属-微塑料共污染的风险评估提供了信息。
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引用次数: 0
Predicting peptide orientation in membrane interactions: a review on transmembrane and surface-bound states. 预测膜相互作用中的肽取向:跨膜和表面结合状态的综述。
IF 2.4 4区 生物学 Q3 BIOPHYSICS Pub Date : 2026-01-23 DOI: 10.1007/s00249-025-01810-7
Lúcio Otávio Nunes
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引用次数: 0
Enhancing Genomic Selection for Soybean Drought Tolerance via Integration of Epistasis and AlphaFold2 Prediction. 利用上位性和AlphaFold2预测增强大豆抗旱性的基因组选择
IF 6.3 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-23 DOI: 10.1111/pce.70408
Ruixin Zhang, Xiaoyue Zhu, Lina Dong, Changhong Guo, Yongjun Shu

Soybean is a globally important economic and food crop, whose production is often constrained by drought stress, posing a serious threat to yield and quality. Genomic selection (GS) has become a core technology in modern breeding, effectively enhancing breeding efficiency. However, conventional prediction models mainly rely on additive genetic effects and fail to adequately incorporate non-additive factors such as epistasis, limiting further improvements in prediction accuracy. In this study, a genome-wide epistatic analysis of soybean drought tolerance identified 3594 protective interaction pairs. Incorporating significant epistatic SNP pairs into six genomic prediction models resulted in comparable and substantial improvements in prediction accuracy across all models (by 24%). Furthermore, integration of AlphaFold2-based protein structure prediction and transcriptional regulatory analyses validated the biological reliability of protective epistatic pairs, effectively reducing the risk of false positives. Network construction and functional enrichment analyses further revealed that these epistatic pairs participate in coordinated protein structural interactions and are enriched in key biological pathways. Haplotype analysis confirmed the critical regulatory role of non-additive effects in soybean drought tolerance. Collectively, this study establishes a comprehensive evidence chain from molecular mechanisms to breeding applications, demonstrating that integrating epistasis into GS can effectively enhance prediction performance for drought tolerance in soybean. These findings provide novel research strategies for the genetic analysis of complex traits and efficient breeding.

大豆是全球重要的经济和粮食作物,其生产经常受到干旱胁迫的制约,对产量和质量构成严重威胁。基因组选择技术已成为现代育种的核心技术,有效地提高了育种效率。然而,传统的预测模型主要依赖于加性遗传效应,未能充分考虑上位性等非加性因素,限制了预测精度的进一步提高。本研究对大豆抗旱性进行了全基因组上位性分析,鉴定出3594对保护性互作对。将重要的上位SNP对纳入6个基因组预测模型后,所有模型的预测准确性都有了相当大的提高(提高了24%)。此外,基于alphafold2的蛋白质结构预测和转录调控分析的整合验证了保护性上位性对的生物学可靠性,有效降低了假阳性的风险。网络构建和功能富集分析进一步揭示了这些上位性对参与协调的蛋白质结构相互作用,并在关键的生物学途径中富集。单倍型分析证实了非加性效应在大豆抗旱性中的关键调控作用。综上所述,本研究建立了从分子机制到育种应用的完整证据链,表明将上位性整合到GS中可以有效提高大豆抗旱性的预测性能。这些发现为复杂性状的遗传分析和高效育种提供了新的研究策略。
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