Pub Date : 2025-01-30DOI: 10.1007/s00114-025-01966-4
Scott O. Rogers, Arnold J. Bendich
Four main classes of introns (group I, group II, spliceosomal, and archaeal) have been reported for all major types of RNA from nuclei and organelles of a wide range of taxa. When and how introns inserted within the genic regions of genomes, however, is often unclear. Introns were examined from Archaea, Bacteria, and Eukarya. Up to 80 bp surrounding each of the 5' and 3' intron/exon borders were compared to search for direct repeats (DRs). For each of the 213 introns examined, DNA sequence analysis revealed DRs at or near the intron/exon borders, ranging from 4 to 30 bp in length, with a mean of 11.4 bp. More than 80% of the repeats were within 10 bp of the intron/exon borders. The numbers of DRs 6–30 bp in length were greater than expected by chance. When a DNA segment moves into a new genomic location, the insertion involves a double-strand DNA break that must be repaired to maintain genome stability and often results in a pair of DRs that now flank the insert. This insertion process applies to both mobile genetic elements (MGEs), such as transposons, and to introns as reported here. The DNA break at the insertion site may be caused by transposon-like events or recombination. Thus, introns and transposons appear to be members of a group of parasitic MGEs that secondarily may benefit their host cell and have expanded greatly in eukaryotes from their prokaryotic ancestors.
{"title":"Direct repeats found in the vicinity of intron splice sites","authors":"Scott O. Rogers, Arnold J. Bendich","doi":"10.1007/s00114-025-01966-4","DOIUrl":"10.1007/s00114-025-01966-4","url":null,"abstract":"<div><p>Four main classes of introns (group I, group II, spliceosomal, and archaeal) have been reported for all major types of RNA from nuclei and organelles of a wide range of taxa. When and how introns inserted within the genic regions of genomes, however, is often unclear. Introns were examined from Archaea, Bacteria, and Eukarya. Up to 80 bp surrounding each of the 5' and 3' intron/exon borders were compared to search for direct repeats (DRs). For each of the 213 introns examined, DNA sequence analysis revealed DRs at or near the intron/exon borders, ranging from 4 to 30 bp in length, with a mean of 11.4 bp. More than 80% of the repeats were within 10 bp of the intron/exon borders. The numbers of DRs 6–30 bp in length were greater than expected by chance. When a DNA segment moves into a new genomic location, the insertion involves a double-strand DNA break that must be repaired to maintain genome stability and often results in a pair of DRs that now flank the insert. This insertion process applies to both mobile genetic elements (MGEs), such as transposons, and to introns as reported here. The DNA break at the insertion site may be caused by transposon-like events or recombination. Thus, introns and transposons appear to be members of a group of parasitic MGEs that secondarily may benefit their host cell and have expanded greatly in eukaryotes from their prokaryotic ancestors.</p></div>","PeriodicalId":794,"journal":{"name":"The Science of Nature","volume":"112 1","pages":""},"PeriodicalIF":2.1,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11782384/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143063122","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kimia Moiniafshari, Alessandra Zanut, Andrea Tapparo, Paolo Pastore, Sara Bogialli, Fazel Abdolahpur Monikh
Humans are constantly exposed to microplastics and nanoplastics (MNPs). Although significant gaps remain in our understanding of their adverse effects on human health, it is increasingly evident that MNPs can penetrate physiological barriers and accumulate in various locations within the human body. Analytical limitations in tracking and measuring nanoplastics in physiological media may persist for several years before we can accurately detect these particles in the human body and establish a clear link between their exposure and associated hazards. In addition to the few studies that have emerged recently, our knowledge of chemicals with properties similar to those of MNPs, as well as other types of nanomaterials, suggests that MNPs may cross the blood-brain barrier (BBB) and potentially induce damage to the human central nervous system. Here, we provide an overview of the limited number of studies available on this topic and present a perspective on the potential pathways through which MNPs may penetrate the BBB. We also discuss the main mechanisms by which MNPs could potentially impact the central nervous system (CNS), with a focus on neurodegenerative diseases such as Alzheimer's Disease (AD), Parkinson's Disease (PD), Multiple Sclerosis (MS), and Amyotrophic Lateral Sclerosis (ALS). This information could contribute to the development of tailored studies exploring the negative effects of MNPs on the CNS.
{"title":"A Perspective on the Potential Impact of Microplastics and Nanoplastics on the Human Central Nervous System","authors":"Kimia Moiniafshari, Alessandra Zanut, Andrea Tapparo, Paolo Pastore, Sara Bogialli, Fazel Abdolahpur Monikh","doi":"10.1039/d4en01017e","DOIUrl":"https://doi.org/10.1039/d4en01017e","url":null,"abstract":"Humans are constantly exposed to microplastics and nanoplastics (MNPs). Although significant gaps remain in our understanding of their adverse effects on human health, it is increasingly evident that MNPs can penetrate physiological barriers and accumulate in various locations within the human body. Analytical limitations in tracking and measuring nanoplastics in physiological media may persist for several years before we can accurately detect these particles in the human body and establish a clear link between their exposure and associated hazards. In addition to the few studies that have emerged recently, our knowledge of chemicals with properties similar to those of MNPs, as well as other types of nanomaterials, suggests that MNPs may cross the blood-brain barrier (BBB) and potentially induce damage to the human central nervous system. Here, we provide an overview of the limited number of studies available on this topic and present a perspective on the potential pathways through which MNPs may penetrate the BBB. We also discuss the main mechanisms by which MNPs could potentially impact the central nervous system (CNS), with a focus on neurodegenerative diseases such as Alzheimer's Disease (AD), Parkinson's Disease (PD), Multiple Sclerosis (MS), and Amyotrophic Lateral Sclerosis (ALS). This information could contribute to the development of tailored studies exploring the negative effects of MNPs on the CNS.","PeriodicalId":73,"journal":{"name":"Environmental Science: Nano","volume":"20 1","pages":""},"PeriodicalIF":8.131,"publicationDate":"2025-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143055614","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Charles A. Clifford, Delphine Bard, Fernando A. Castro, Gareth S. Evans, Mark Gee, Samantha Hall, Stephanie Kitchen, Denis Koltsov, Alex Price, Rachel Smith, Fatima Nasser
The term advanced materials (AM) is used widely to cover a large number of diverse new innovative materials, including nanomaterials, advanced composites, innovative surface coatings, (bio)polymers, porous and particle systems, ceramics, smart and metamaterials and advanced fibres and textiles. With any new materials, there are commercial and performance advantages that need to be balanced with any potential environmental, health and safety issues, for example, around exposure, toxicity, sustainability and waste. Key players in the UK from government bodies, research, measurement and standardisation organisations, academia and industry came together to consider these issues via two online workshops in April 2021 and February 2023. At each event, scene-setting presentations by key experts were followed by discussions addressing salient issues, including, benefits and barriers to AM commercialisation, potential environmental, health and safety issues, and safe(r) by design approaches. The first workshop served as a starting point to share views on the potential societal benefits of AM and perceived obstacles to their wider adoption. The second workshop focused on safety by design, life cycle analysis and challenges faced at different points in the supply chain. In addition to confirming findings from previous studies, these workshops also highlighted specific challenges that are faced by small to medium sized enterprises (SME). These workshops provided a unique opportunity for policy makers, regulators, standardisation bodies, funding bodies and academia to understand the concerns of industry and researchers, who develop and work with AM. This included what they felt would help support them in their aims of developing innovative, commercially successful, safe and sustainable AM.
{"title":"Safe and sustainable development of advanced materials: UK National Knowledge Sharing Network Workshops","authors":"Charles A. Clifford, Delphine Bard, Fernando A. Castro, Gareth S. Evans, Mark Gee, Samantha Hall, Stephanie Kitchen, Denis Koltsov, Alex Price, Rachel Smith, Fatima Nasser","doi":"10.1039/d4en00555d","DOIUrl":"https://doi.org/10.1039/d4en00555d","url":null,"abstract":"The term advanced materials (AM) is used widely to cover a large number of diverse new innovative materials, including nanomaterials, advanced composites, innovative surface coatings, (bio)polymers, porous and particle systems, ceramics, smart and metamaterials and advanced fibres and textiles. With any new materials, there are commercial and performance advantages that need to be balanced with any potential environmental, health and safety issues, for example, around exposure, toxicity, sustainability and waste. Key players in the UK from government bodies, research, measurement and standardisation organisations, academia and industry came together to consider these issues <em>via</em> two online workshops in April 2021 and February 2023. At each event, scene-setting presentations by key experts were followed by discussions addressing salient issues, including, benefits and barriers to AM commercialisation, potential environmental, health and safety issues, and safe(r) by design approaches. The first workshop served as a starting point to share views on the potential societal benefits of AM and perceived obstacles to their wider adoption. The second workshop focused on safety by design, life cycle analysis and challenges faced at different points in the supply chain. In addition to confirming findings from previous studies, these workshops also highlighted specific challenges that are faced by small to medium sized enterprises (SME). These workshops provided a unique opportunity for policy makers, regulators, standardisation bodies, funding bodies and academia to understand the concerns of industry and researchers, who develop and work with AM. This included what they felt would help support them in their aims of developing innovative, commercially successful, safe and sustainable AM.","PeriodicalId":73,"journal":{"name":"Environmental Science: Nano","volume":"52 1","pages":""},"PeriodicalIF":8.131,"publicationDate":"2025-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143055616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The current research work is an initiative taken for the remediation of water contaminated with carbon nanomaterials (CNMs) by employing microemulsion (ME) and cloud point extraction (CPE) methodologies. CNMs viz., graphene oxide (GO) and multiwalled carbon nanotube (MWCNT) dispersed in water (2000 mg/L) were extracted in the oil phase and surfactant phase based on optimized ME and CPE parameters which include oil, pH, incubation temperature, the content of non-ionic-surfactants (Triton X-100) and NaCl. The supernatant and extracted CNMs from the ME and CPE experiments were analyzed using UV–Vis spectroscopy, DLS, SEM, TEM, XRD, and Raman spectroscopy. The disappearance of characteristic peaks of GO and MWCNT in the UV–Vis, Raman, and DLS spectra of the treated water samples signifies the absence of nanoparticles in the remediated water. A highly efficient removal (~ 97%) of GO and MWCNT from contaminated water through CPE in one cycle was achieved compared to ME (~ 90%) in two recovery cycles. Thus, the CPE technique efficiently removes CNMs from polluted water for their benign disposal, mitigating potential ecological and health risks.