Pub Date : 2025-03-05DOI: 10.1021/acs.bioconjchem.4c00552
Grant A Knappe, Jeffrey Gorman, Andrew N Bigley, Steven P Harvey, Mark Bathe
Nucleic acid nanoparticles (NANPs) fabricated by using the DNA origami method have broad utility in materials science and bioengineering. Their site-specific, heterovalent functionalization with secondary molecules such as proteins or fluorophores is a unique feature of this technology that drives its utility. Currently, however, there are few chemistries that enable fast, efficient covalent functionalization of NANPs with a broad conjugate scope and heterovalency. To address this need, we introduce synthetic methods to access inverse electron-demand Diels-Alder chemistry on NANPs. We demonstrate a broad conjugate scope, characterize application-relevant kinetics, and integrate this new chemistry with strain-promoted azide-alkyne cycloaddition chemistry to enable heterovalent click reactions on NANPs. We applied these chemistries to formulate a prototypical chemical countermeasure against chemical nerve agents. We envision this additional chemistry finding broad utility in the synthetic toolkit accessible to the nucleic acid nanotechnology community.
{"title":"Heterovalent Click Reactions on DNA Origami.","authors":"Grant A Knappe, Jeffrey Gorman, Andrew N Bigley, Steven P Harvey, Mark Bathe","doi":"10.1021/acs.bioconjchem.4c00552","DOIUrl":"https://doi.org/10.1021/acs.bioconjchem.4c00552","url":null,"abstract":"<p><p>Nucleic acid nanoparticles (NANPs) fabricated by using the DNA origami method have broad utility in materials science and bioengineering. Their site-specific, heterovalent functionalization with secondary molecules such as proteins or fluorophores is a unique feature of this technology that drives its utility. Currently, however, there are few chemistries that enable fast, efficient covalent functionalization of NANPs with a broad conjugate scope and heterovalency. To address this need, we introduce synthetic methods to access inverse electron-demand Diels-Alder chemistry on NANPs. We demonstrate a broad conjugate scope, characterize application-relevant kinetics, and integrate this new chemistry with strain-promoted azide-alkyne cycloaddition chemistry to enable heterovalent click reactions on NANPs. We applied these chemistries to formulate a prototypical chemical countermeasure against chemical nerve agents. We envision this additional chemistry finding broad utility in the synthetic toolkit accessible to the nucleic acid nanotechnology community.</p>","PeriodicalId":29,"journal":{"name":"Bioconjugate Chemistry","volume":" ","pages":""},"PeriodicalIF":4.0,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143555305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-05DOI: 10.1016/j.rser.2025.115548
C.J. Okeke , P.K. Egberibine , J.U. Edet , J. Wilson , R.E. Blanchard
The transition towards sustainable energy, championed by the Nigerian Electricity Act (2023) underscores the importance of solar energy and green hydrogen in tackling energy poverty in sub-Saharan Africa, especially in Nigeria. However, uncertainty remains among investors and government entities regarding the optimal geographic, technical, and economic conditions for utility-scale renewable electricity projects. To address this, an evaluation of two solar technologies—Photovoltaic (PV) and Parabolic Trough CSP technology (PT-CSP)—was conducted under specific geographical and techno-economic criteria to support solar electricity and green hydrogen development across Nigeria. The study estimated Nigeria's energy demand and employed site evaluation, Multi-Criteria Decision-Making, the Analytic Hierarchy Process (AHP), and Geographic Information System (GIS) tools, alongside the NREL System Advisory Model (NREL-SAM) for power plant analysis. Results indicate that 105.63 GWe of grid capacity is required to meet Nigeria's energy demand, whereas 57.32 GWe from grid-connected solar plants needed to replace unsustainable grid supplying 54.3 % of estimated population. Lagos requires the highest capacity (4.93 GWe), followed by Rivers, Kano, Oyo, and Ogun. Land suitability assessment identified 0.79 % (6815.68 km2) of Nigeria as highly suitable for solar-hydrogen projects, while 18.49 % (158,450.45 km2) is less suitable with most of Nigeria moderately suitable. Regions are ranked with the North-Central and North-East identified as most viable for PV and PT-CSP projects. A comparative economic analysis shows PV is superior in Nigeria, generating twice the energy output and costing six times less per unit of electricity than PT-CSP. These findings offer guidance for optimal solar energy and green hydrogen deployment.
{"title":"Comparative assessment of concentrated solar power and photovoltaic for power generation and green hydrogen potential in West Africa: A case study on Nigeria","authors":"C.J. Okeke , P.K. Egberibine , J.U. Edet , J. Wilson , R.E. Blanchard","doi":"10.1016/j.rser.2025.115548","DOIUrl":"10.1016/j.rser.2025.115548","url":null,"abstract":"<div><div>The transition towards sustainable energy, championed by the Nigerian Electricity Act (2023) underscores the importance of solar energy and green hydrogen in tackling energy poverty in sub-Saharan Africa, especially in Nigeria. However, uncertainty remains among investors and government entities regarding the optimal geographic, technical, and economic conditions for utility-scale renewable electricity projects. To address this, an evaluation of two solar technologies—Photovoltaic (PV) and Parabolic Trough CSP technology (PT-CSP)—was conducted under specific geographical and techno-economic criteria to support solar electricity and green hydrogen development across Nigeria. The study estimated Nigeria's energy demand and employed site evaluation, Multi-Criteria Decision-Making, the Analytic Hierarchy Process (AHP), and Geographic Information System (GIS) tools, alongside the NREL System Advisory Model (NREL-SAM) for power plant analysis. Results indicate that 105.63 GW<sub>e</sub> of grid capacity is required to meet Nigeria's energy demand, whereas 57.32 GW<sub>e</sub> from grid-connected solar plants needed to replace unsustainable grid supplying 54.3 % of estimated population. Lagos requires the highest capacity (4.93 GW<sub>e</sub>), followed by Rivers, Kano, Oyo, and Ogun. Land suitability assessment identified 0.79 % (6815.68 km<sup>2</sup>) of Nigeria as highly suitable for solar-hydrogen projects, while 18.49 % (158,450.45 km<sup>2</sup>) is less suitable with most of Nigeria moderately suitable. Regions are ranked with the North-Central and North-East identified as most viable for PV and PT-CSP projects. A comparative economic analysis shows PV is superior in Nigeria, generating twice the energy output and costing six times less per unit of electricity than PT-CSP. These findings offer guidance for optimal solar energy and green hydrogen deployment.</div></div>","PeriodicalId":418,"journal":{"name":"Renewable and Sustainable Energy Reviews","volume":"215 ","pages":"Article 115548"},"PeriodicalIF":16.3,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143551800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yunyi Zhu, Yuan Wang, Elisabeth Zhu, Zeyu Ma, Hanchen Wang, Chunsheng Chen, Jing Guan, T. David Waite
Membrane fouling remains a significant challenge in the operation of membrane bioreactors (MBRs). Plant operators rely heavily on observations of filtration performance from noisy sensor data to assess membrane fouling conditions and lab-based protocols for plant maintenance, often leading to inaccurate estimations of future performance and delayed membrane cleaning. This challenge is further compounded by the difficulty in integrating existing complex mechanistic models with the Internet of Things (IoT) systems of wastewater treatment plants (WWTPs). By harnessing data obtained from WWTPs, along with innovative data denoising and model training strategies, we developed a machine learning application (MBR-Net) that is capable of forecasting membrane fouling, as indicated by permeability, for a full-scale submerged MBR plant in real time. We show that the trained model can effectively predict one-day-ahead changes in irreversible fouling under different desired fluxes, cleaning conditions and feedwater conditions (with MAPE < 6.45%, MAE < 3.71 LMH bar–1, and R2 > 0.87 on two independent testing sets). Although data availability presented certain limitations in the model development process, the current results demonstrate the significant value of machine learning in membrane fouling predictions and in providing decision support for fouling mitigation strategies in full-scale WWTPs.
{"title":"Predicting Membrane Fouling of Submerged Membrane Bioreactor Wastewater Treatment Plants Using Machine Learning","authors":"Yunyi Zhu, Yuan Wang, Elisabeth Zhu, Zeyu Ma, Hanchen Wang, Chunsheng Chen, Jing Guan, T. David Waite","doi":"10.1021/acs.est.4c12835","DOIUrl":"https://doi.org/10.1021/acs.est.4c12835","url":null,"abstract":"Membrane fouling remains a significant challenge in the operation of membrane bioreactors (MBRs). Plant operators rely heavily on observations of filtration performance from noisy sensor data to assess membrane fouling conditions and lab-based protocols for plant maintenance, often leading to inaccurate estimations of future performance and delayed membrane cleaning. This challenge is further compounded by the difficulty in integrating existing complex mechanistic models with the Internet of Things (IoT) systems of wastewater treatment plants (WWTPs). By harnessing data obtained from WWTPs, along with innovative data denoising and model training strategies, we developed a machine learning application (MBR-Net) that is capable of forecasting membrane fouling, as indicated by permeability, for a full-scale submerged MBR plant in real time. We show that the trained model can effectively predict one-day-ahead changes in irreversible fouling under different desired fluxes, cleaning conditions and feedwater conditions (with MAPE < 6.45%, MAE < 3.71 LMH bar<sup>–1</sup>, and <i>R</i><sup>2</sup> > 0.87 on two independent testing sets). Although data availability presented certain limitations in the model development process, the current results demonstrate the significant value of machine learning in membrane fouling predictions and in providing decision support for fouling mitigation strategies in full-scale WWTPs.","PeriodicalId":36,"journal":{"name":"环境科学与技术","volume":"47 1","pages":""},"PeriodicalIF":9.028,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143560781","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xin-Ming Xu, Jiping Wang, Xiaoxu Chen, Jinchun Chen, Zhongyuan Zhao, Yuhang Yao, Lu Shao, Qian Liu
A copper(II)-catalyzed radical cascade reaction of N-propargyl enamides with sulfonyl hydrazides was developed, which provided an unprecedented method for the direct synthesis of meta-sulfonylpyridines in high efficiency with good functional group compatibility and simple operation. Mechanistic studies indicated that this tandem process might be composed of the radical addition, intramolecular cyclization and oxidative aromatization.
{"title":"Synthesis of meta-Sulfonylpyridines via Copper(II)-Catalyzed Cascade Sulfonylation/Cyclization/Aromatization of Tertiary Enamides with Sulfonylhydrazides","authors":"Xin-Ming Xu, Jiping Wang, Xiaoxu Chen, Jinchun Chen, Zhongyuan Zhao, Yuhang Yao, Lu Shao, Qian Liu","doi":"10.1021/acs.joc.5c00140","DOIUrl":"https://doi.org/10.1021/acs.joc.5c00140","url":null,"abstract":"A copper(II)-catalyzed radical cascade reaction of <i>N</i>-propargyl enamides with sulfonyl hydrazides was developed, which provided an unprecedented method for the direct synthesis of <i>meta</i>-sulfonylpyridines in high efficiency with good functional group compatibility and simple operation. Mechanistic studies indicated that this tandem process might be composed of the radical addition, intramolecular cyclization and oxidative aromatization.","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"36 1","pages":""},"PeriodicalIF":4.354,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143546657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-05DOI: 10.1021/acs.jpcc.4c08584
Sebastian Lindenthal, Daniel Rippel, Lucas Kistner, Angus Hawkey, Jana Zaumseil
Despite its comparatively low electron affinity, tris(pentafluorophenyl)borane (BCF) has been widely explored as an efficient molecular p-dopant for semiconducting polymers through the formation of Brønsted acidic complexes as well as its high affinity toward Lewis-basic nitrogen moieties. Many conjugated polymers that are used for selective wrapping and dispersion of semiconducting single-walled carbon nanotubes (SWCNTs) such as poly[(9,9-di-n-octylfluorenyl-2,7-diyl)-alt-(6,6′-(2,2′-bipyridine))] (PFO-BPy) contain nitrogen moieties that should promote interaction with BCF. Here, we demonstrate that BCF indeed efficiently p-dopes even small-diameter (6,5) SWCNTs that are wrapped with large-bandgap PFO-BPy as corroborated by bleaching of the main absorption peaks and the appearance of red-shifted trion absorption and emission. In contrast, SWCNTs that are wrapped with poly(9,9-di-n-octylfluorenyl-2,7-diyl) (PFO) without any Lewis-basic nitrogen moieties are only mildly doped. UV–Vis–NIR absorption, 19F NMR, and 11B NMR spectra confirm that BCF dopes the bipyridine-containing PFO-BPy but not PFO, thus leading to a proposed doping mechanism that relies on the unique interactions between BCF, the bipyridine moieties in PFO-BPy, and the nanotubes. Since BCF doping of PFO-BPy-wrapped (6,5) SWCNTs is more efficient than doping with F4TCNQ and more stable than doping with AuCl3, it provides a reliable alternative for spectroscopic studies of the interactions of charge carriers and excitons in SWCNTs.
{"title":"Synergistic p-Doping of Polymer-Wrapped Small-Diameter Single-Walled Carbon Nanotubes by Tris(pentafluorophenyl)borane","authors":"Sebastian Lindenthal, Daniel Rippel, Lucas Kistner, Angus Hawkey, Jana Zaumseil","doi":"10.1021/acs.jpcc.4c08584","DOIUrl":"https://doi.org/10.1021/acs.jpcc.4c08584","url":null,"abstract":"Despite its comparatively low electron affinity, tris(pentafluorophenyl)borane (BCF) has been widely explored as an efficient molecular p-dopant for semiconducting polymers through the formation of Brønsted acidic complexes as well as its high affinity toward Lewis-basic nitrogen moieties. Many conjugated polymers that are used for selective wrapping and dispersion of semiconducting single-walled carbon nanotubes (SWCNTs) such as poly[(9,9-di-<i>n</i>-octylfluorenyl-2,7-diyl)-<i>alt</i>-(6,6′-(2,2′-bipyridine))] (PFO-BPy) contain nitrogen moieties that should promote interaction with BCF. Here, we demonstrate that BCF indeed efficiently p-dopes even small-diameter (6,5) SWCNTs that are wrapped with large-bandgap PFO-BPy as corroborated by bleaching of the main absorption peaks and the appearance of red-shifted trion absorption and emission. In contrast, SWCNTs that are wrapped with poly(9,9-di-<i>n</i>-octylfluorenyl-2,7-diyl) (PFO) without any Lewis-basic nitrogen moieties are only mildly doped. UV–Vis–NIR absorption, <sup>19</sup>F NMR, and <sup>11</sup>B NMR spectra confirm that BCF dopes the bipyridine-containing PFO-BPy but not PFO, thus leading to a proposed doping mechanism that relies on the unique interactions between BCF, the bipyridine moieties in PFO-BPy, and the nanotubes. Since BCF doping of PFO-BPy-wrapped (6,5) SWCNTs is more efficient than doping with F<sub>4</sub>TCNQ and more stable than doping with AuCl<sub>3</sub>, it provides a reliable alternative for spectroscopic studies of the interactions of charge carriers and excitons in SWCNTs.","PeriodicalId":61,"journal":{"name":"The Journal of Physical Chemistry C","volume":"30 1","pages":""},"PeriodicalIF":4.126,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143546684","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-05DOI: 10.1021/acs.jpclett.5c00172
Miguel de la Puente, Axel Gomez, Damien Laage
Excess proton diffusion at aqueous interfaces is crucial for applications including electrocatalysis, aerosol chemistry, and biological energy conversion. While interfaces have been proposed as pathways for channeling protons, proton diffusion at interfaces remains far less understood than in the bulk. Here we focus on the air–water interface and use density functional theory-based deep potential molecular dynamics simulations to reveal the contrasting interface’s impacts: excess proton diffusion slows down compared to the bulk, while water diffusion accelerates. This contrast stems from reduced hydrogen-bond coordination at the interface, which facilitates water diffusion and transient unstable proton rattling but impedes the stable proton hops central to Grotthuss diffusion. As a result, at the interface, excess protons and water molecules diffuse at comparable rates, in stark departure from bulk behavior. This mechanistic insight delineates distinct limiting regimes for bulk-enhanced interfacial proton diffusion, with important implications for interfacial chemistry.
{"title":"Why Proton Grotthuss Diffusion Slows down at the Air–Water Interface while Water Diffusion Accelerates","authors":"Miguel de la Puente, Axel Gomez, Damien Laage","doi":"10.1021/acs.jpclett.5c00172","DOIUrl":"https://doi.org/10.1021/acs.jpclett.5c00172","url":null,"abstract":"Excess proton diffusion at aqueous interfaces is crucial for applications including electrocatalysis, aerosol chemistry, and biological energy conversion. While interfaces have been proposed as pathways for channeling protons, proton diffusion at interfaces remains far less understood than in the bulk. Here we focus on the air–water interface and use density functional theory-based deep potential molecular dynamics simulations to reveal the contrasting interface’s impacts: excess proton diffusion slows down compared to the bulk, while water diffusion accelerates. This contrast stems from reduced hydrogen-bond coordination at the interface, which facilitates water diffusion and transient unstable proton rattling but impedes the stable proton hops central to Grotthuss diffusion. As a result, at the interface, excess protons and water molecules diffuse at comparable rates, in stark departure from bulk behavior. This mechanistic insight delineates distinct limiting regimes for bulk-enhanced interfacial proton diffusion, with important implications for interfacial chemistry.","PeriodicalId":62,"journal":{"name":"The Journal of Physical Chemistry Letters","volume":"11 1","pages":""},"PeriodicalIF":6.475,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143546855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study presents a novel and practical strategy for synthesizing cannabinoids using a fluorinated alcohol solvent for the first time. Hexafluoroisopropanol (HFIP) was found to efficiently promote intermolecular Friedel-Crafts alkylation between allylic alcohols and electron-rich aromatics. This approach enabled the successful synthesis of cannabidiol (CBD) derivatives bearing various alkyl substituents, as well as the corresponding unnatural regioisomer (abnCBD), achieving moderate to high yields under mild conditions without the need for additional catalysts or other reagents. Insights in the mechanistic details were obtained through DFT calculations. Furthermore, a streamlined three-step synthesis of 5-alkyl resorcinol derivatives, essential starting materials for CBD synthesis, from the readily available chalcones was developed. Preliminary cytotoxicity assays using MTT revealed that some synthetic CBD derivatives exhibited promising anticancer activities.
{"title":"A Mild and Catalyst-Free Synthesis of Cannabidiols and Regioisomers Mediated by Fluorinated Alcohols.","authors":"Phanomsak Yukhet, Kriangsak Faikhruea, Rewadee Mowang, Phiphob Naweephattana, Manussada Ratanasak, Yasuteru Shigeta, Thanyada Rungrotmongkol, Chanat Aonbangkhen, Tirayut Vilaivan","doi":"10.1002/asia.202401648","DOIUrl":"https://doi.org/10.1002/asia.202401648","url":null,"abstract":"<p><p>This study presents a novel and practical strategy for synthesizing cannabinoids using a fluorinated alcohol solvent for the first time. Hexafluoroisopropanol (HFIP) was found to efficiently promote intermolecular Friedel-Crafts alkylation between allylic alcohols and electron-rich aromatics. This approach enabled the successful synthesis of cannabidiol (CBD) derivatives bearing various alkyl substituents, as well as the corresponding unnatural regioisomer (abnCBD), achieving moderate to high yields under mild conditions without the need for additional catalysts or other reagents. Insights in the mechanistic details were obtained through DFT calculations. Furthermore, a streamlined three-step synthesis of 5-alkyl resorcinol derivatives, essential starting materials for CBD synthesis, from the readily available chalcones was developed. Preliminary cytotoxicity assays using MTT revealed that some synthetic CBD derivatives exhibited promising anticancer activities.</p>","PeriodicalId":145,"journal":{"name":"Chemistry - An Asian Journal","volume":" ","pages":"e202401648"},"PeriodicalIF":3.5,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143555433","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Automerization is defined as a rearrangement reaction that yields a degenerate form of the starting material. We now report that cyclohexeno[3,4]cyclodeca-1,5-diyne-3-ene rearranges to its automer, via a D2h-symmetric p-benzyne intermediate. The NMR evidence is that when the enediyne is heated to 75 °C in DMSO with either LiI or NaNO3 as possible nucleophile, the enediyne is consumed only in the presence of LiI, whereas it remains “unchanged” in the presence of NaNO3.
{"title":"Automerization of an Enediyne via a Symmetrical p-Benzyne Diradical Intermediate","authors":"Charles L. Perrin, Denise H. Tran","doi":"10.1021/acs.joc.4c03144","DOIUrl":"https://doi.org/10.1021/acs.joc.4c03144","url":null,"abstract":"Automerization is defined as a rearrangement reaction that yields a degenerate form of the starting material. We now report that cyclohexeno[3,4]cyclodeca-1,5-diyne-3-ene rearranges to its automer, via a <i>D</i><sub>2h</sub>-symmetric <i>p</i>-benzyne intermediate. The NMR evidence is that when the enediyne is heated to 75 °C in DMSO with either LiI or NaNO<sub>3</sub> as possible nucleophile, the enediyne is consumed only in the presence of LiI, whereas it remains “unchanged” in the presence of NaNO<sub>3</sub>.","PeriodicalId":57,"journal":{"name":"Journal of Organic Chemistry","volume":"8 1","pages":""},"PeriodicalIF":4.354,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143539097","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-04Epub Date: 2025-02-21DOI: 10.1021/acs.biochem.5c00012
Deepa Neupane, Miguel Santos-Fernandez, Francisco Fernandez-Lima, Katlyn K Meier
Huntington's disease (HD) is a fatal neurodegenerative disease characterized by the expression of huntingtin protein (htt) that has a polyglutamine (CAG; polyQ) repeat domain consisting of 36 or more glutamines (mhtt). Historically, mhtt is more broadly associated with HD severity, as are elevated metal levels observed in HD patients. The depletion of wild-type (WT) htt (fewer than 36Qs) is also recognized as a contributing factor to HD progression; however, many questions remain about the interactions of biorelevant metals with WT htt and the impact of the interactions on protein aggregation. In the present work, we utilize a combination of biochemical assays and spectroscopic techniques to provide insights into the interaction of copper with an in vitro htt model (N171-17Q). Herein, we use sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and dynamic light scattering to show that the addition of equimolar or higher concentrations of Cu(II) to htt induces time- and temperature-dependent protein oligomerization/aggregation. Additionally, chelation assays, trapped ion mobility spectrometry, and mass spectrometry confirm the (i) rapid reduction of Cu(II) in the presence of N171-17Q htt, (ii) direct binding of multiple copper ions per protein, and (iii) complex Cu:htt speciation profile with a preference for three distinct Cu:htt states. These findings contribute to our molecular level understanding of copper's role in the depletion and oligomerization/aggregation of WT htt while underscoring the physiological significance of our work, its potential relevance to metal binding in mhtt, and its significance for identifying new avenues for biomarker exploration and therapeutic design strategies.
{"title":"Multiple Copper Ions Bind to and Promote the Oligomerization of Huntingtin Protein with Nonpathological Repeat Expansions.","authors":"Deepa Neupane, Miguel Santos-Fernandez, Francisco Fernandez-Lima, Katlyn K Meier","doi":"10.1021/acs.biochem.5c00012","DOIUrl":"10.1021/acs.biochem.5c00012","url":null,"abstract":"<p><p>Huntington's disease (HD) is a fatal neurodegenerative disease characterized by the expression of huntingtin protein (htt) that has a polyglutamine (CAG; polyQ) repeat domain consisting of 36 or more glutamines (mhtt). Historically, mhtt is more broadly associated with HD severity, as are elevated metal levels observed in HD patients. The depletion of wild-type (WT) htt (fewer than 36Qs) is also recognized as a contributing factor to HD progression; however, many questions remain about the interactions of biorelevant metals with WT htt and the impact of the interactions on protein aggregation. In the present work, we utilize a combination of biochemical assays and spectroscopic techniques to provide insights into the interaction of copper with an <i>in vitro</i> htt model (N171-17Q). Herein, we use sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and dynamic light scattering to show that the addition of equimolar or higher concentrations of Cu(II) to htt induces time- and temperature-dependent protein oligomerization/aggregation. Additionally, chelation assays, trapped ion mobility spectrometry, and mass spectrometry confirm the (i) rapid reduction of Cu(II) in the presence of N171-17Q htt, (ii) direct binding of multiple copper ions per protein, and (iii) complex Cu:htt speciation profile with a preference for three distinct Cu:htt states. These findings contribute to our molecular level understanding of copper's role in the depletion and oligomerization/aggregation of WT htt while underscoring the physiological significance of our work, its potential relevance to metal binding in mhtt, and its significance for identifying new avenues for biomarker exploration and therapeutic design strategies.</p>","PeriodicalId":28,"journal":{"name":"Biochemistry Biochemistry","volume":" ","pages":"1121-1135"},"PeriodicalIF":2.9,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143472008","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-04Epub Date: 2025-01-06DOI: 10.1021/acs.biochem.4c00478
Brandon Irizarry, Judianne Davis, Jitika Rajpoot, Xiaoyue Zhu, Feng Xu, Steven O Smith, William E Van Nostrand
Cerebral vascular deposition of the amyloid-β (Aβ) peptide, a condition known as cerebral amyloid angiopathy (CAA), is associated with intracerebral hemorrhaging and contributes to disease progression in Alzheimer's disease (AD) and vascular cognitive impairment and dementia (VCID). Familial mutations at positions 22 and 23 within the Aβ peptide lead to early onset and severe CAA pathology. Here, we evaluate the effects of fibrillar Aβ peptides on the viability of primary-cultured human cerebral smooth muscle (HCSM) cells, which are the major site of amyloid deposition in cerebral blood vessel walls. Comparisons are made of the familial E22Q (Dutch) mutant of Aβ40 with wild-type Aβ40 and Aβ42. In agreement with previous studies, we find that there is a significant reduction in cell viability when Aβ40-Dutch or Aβ42-WT peptides are added to HCSM cell cultures as monomeric Aβ, whereas Aβ40-WT is relatively nontoxic. The binding of Aβ fibrils derived from sporadic CAA or familial Dutch-type CAA brain tissue to the membrane surface of HCSM cells does not result in a significant loss of cell viability. In contrast, when Aβ40-WT monomers and sporadic CAA fibrils are coincubated in HCSM cell cultures, there is a significant reduction in HCSM cell viability that is accompanied by an increase in cell surface fibril formation. Lastly, intrathecal administration of Aβ40-Dutch fibrillar seeds promotes fibrillar amyloid accumulation in the smooth muscle of meningeal vessels in the rTg-D transgenic rat model of CAA. Together, the present findings suggest that fibrillar Aβ seeds propagate the expansion of new amyloid fibrils on cerebral vascular smooth muscle, leading to membrane disruption and cell death.
{"title":"Aβ40 Fibril Assembly on Human Cerebral Smooth Muscle Cells Impairs Cell Viability.","authors":"Brandon Irizarry, Judianne Davis, Jitika Rajpoot, Xiaoyue Zhu, Feng Xu, Steven O Smith, William E Van Nostrand","doi":"10.1021/acs.biochem.4c00478","DOIUrl":"https://doi.org/10.1021/acs.biochem.4c00478","url":null,"abstract":"<p><p>Cerebral vascular deposition of the amyloid-β (Aβ) peptide, a condition known as cerebral amyloid angiopathy (CAA), is associated with intracerebral hemorrhaging and contributes to disease progression in Alzheimer's disease (AD) and vascular cognitive impairment and dementia (VCID). Familial mutations at positions 22 and 23 within the Aβ peptide lead to early onset and severe CAA pathology. Here, we evaluate the effects of fibrillar Aβ peptides on the viability of primary-cultured human cerebral smooth muscle (HCSM) cells, which are the major site of amyloid deposition in cerebral blood vessel walls. Comparisons are made of the familial E22Q (Dutch) mutant of Aβ40 with wild-type Aβ40 and Aβ42. In agreement with previous studies, we find that there is a significant reduction in cell viability when Aβ40-Dutch or Aβ42-WT peptides are added to HCSM cell cultures as monomeric Aβ, whereas Aβ40-WT is relatively nontoxic. The binding of Aβ fibrils derived from sporadic CAA or familial Dutch-type CAA brain tissue to the membrane surface of HCSM cells does not result in a significant loss of cell viability. In contrast, when Aβ40-WT monomers and sporadic CAA fibrils are coincubated in HCSM cell cultures, there is a significant reduction in HCSM cell viability that is accompanied by an increase in cell surface fibril formation. Lastly, intrathecal administration of Aβ40-Dutch fibrillar seeds promotes fibrillar amyloid accumulation in the smooth muscle of meningeal vessels in the rTg-D transgenic rat model of CAA. Together, the present findings suggest that fibrillar Aβ seeds propagate the expansion of new amyloid fibrils on cerebral vascular smooth muscle, leading to membrane disruption and cell death.</p>","PeriodicalId":28,"journal":{"name":"Biochemistry Biochemistry","volume":"64 5","pages":"1065-1078"},"PeriodicalIF":2.9,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143539490","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}