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Ascorbate: a forgotten component in the cytotoxicity of Cu(II) ATCUN peptide complexes. 抗坏血酸:Cu(II) ATCUN 肽复合物细胞毒性中被遗忘的成分。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-11 DOI: 10.1007/s00775-024-02083-9
Julian Heinrich, Elisa Siddiqui, Henrike Eckstein, Michael Naumann, Nora Kulak

In 1983, Linus Pauling and colleagues reported about enhanced antitumor activity of the Cu(II) complex of the simplest ATCUN (amino terminal Cu(II) and Ni(II)-binding motif) peptide (NH2-Gly-Gly-His-COOH, GGH) in the presence of ascorbate as an additive. In the following 4 decades, structural modifications of this complex were implemented, however, anticancer activity could not be significantly increased. This has led to neglecting the ATCUN motif and its Cu(II) complexes as potential chemotherapeutic agents. Furthermore, the addition of ascorbate with its positive effect on the anticancer activity has fallen into oblivion. In this work, we compared Cu(II) GGH with Cu(II) ATCUN peptides bearing β-Ala instead of Gly at the 2nd position of the peptide sequence regarding their in vitro complex stability and cytotoxicity (MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) and annexin V-FITC (fluorescein isothiocyanate) apoptosis assay) towards three cancer cell lines (AGS, HeLa and NCI-N87). Such an exchange of amino acids led to an up to three-fold higher cytotoxic effect in the presence of ascorbate. We thus achieved a significant increase in the otherwise moderate cytotoxicity of Cu(II) ATCUN-like complexes. Lipophilicity assays (n-octanol/water coefficient, log P values) of the studied complexes were used to evaluate differences in the antiproliferative activity.

1983 年,莱纳斯-鲍林及其同事报告了最简单的 ATCUN(氨基末端 Cu(II)和 Ni(II)结合基团)多肽(NH2-Gly-Gly-His-COOH,GGH)的 Cu(II)复合物在抗坏血酸作为添加剂的情况下增强抗肿瘤活性的情况。在随后的 40 年中,人们对这种复合物进行了结构改造,但抗癌活性并没有显著提高。这导致人们忽视了 ATCUN 主题及其铜(II)复合物作为潜在化疗药物的作用。此外,抗坏血酸的添加对抗癌活性也有积极作用,但却被忽略了。在这项工作中,我们比较了 Cu(II) GGH 与肽序列第 2 位上含有 β-Ala 而非 Gly 的 Cu(II) ATCUN 肽的体外复合物稳定性和细胞毒性(MTT(3-(4、5-二甲基噻唑-2-基)-2,5-二苯基溴化四唑鎓试验)和附件素 V-FITC(异硫氰酸荧光素)凋亡试验)对三种癌细胞系(AGS、HeLa 和 NCI-N87)的体外复合物稳定性和细胞毒性。在有抗坏血酸存在的情况下,这种氨基酸交换可使细胞毒性效果提高三倍。因此,我们显著提高了 Cu(II) ATCUN 类复合物原本适中的细胞毒性。所研究复合物的亲脂性测定(正辛醇/水系数、对数 P 值)用于评估抗增殖活性的差异。
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引用次数: 0
Correction: Quantitative proteomic analysis reveals Ga(III) polypyridyl catecholate complexes disrupt Aspergillus fumigatus mitochondrial function. 更正:定量蛋白质组分析显示,Ga(III)多吡啶儿茶酚复合物会破坏曲霉线粒体的功能。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-30 DOI: 10.1007/s00775-024-02079-5
Magdalena Piatek, Brunella Grassiri, Lewis More O'Ferrall, Anna Maria Piras, Giovanna Batoni, Semih Esin, Christine O'Connor, Darren Griffith, Anne Marie Healy, Kevin Kavanagh
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引用次数: 0
Electron transfer in biological systems. 生物系统中的电子转移
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-18 DOI: 10.1007/s00775-024-02076-8
Helder M Marques

Examples of how metalloproteins feature in electron transfer processes in biological systems are reviewed. Attention is focused on the electron transport chains of cellular respiration and photosynthesis, and on metalloproteins that directly couple electron transfer to a chemical reaction. Brief mention is also made of extracellular electron transport. While covering highlights of the recent and the current literature, this review is aimed primarily at introducing the senior undergraduate and the novice postgraduate student to this important aspect of bioinorganic chemistry.

本研究综述了金属蛋白如何在生物系统的电子传递过程中发挥作用的实例。重点介绍了细胞呼吸和光合作用的电子传递链,以及将电子传递与化学反应直接耦合的金属蛋白。此外,还简要介绍了细胞外电子传递。虽然本综述涵盖了近期和当前文献的重点内容,但其主要目的是向高年级本科生和研究生新手介绍生物无机化学的这一重要方面。
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引用次数: 0
Rapid method for screening of both calcium and magnesium chelation with comparison of 21 known metal chelators. 通过比较 21 种已知金属螯合剂,快速筛选钙镁螯合剂的方法。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-18 DOI: 10.1007/s00775-024-02078-6
Lukáš Konečný, Zuzana Lomozová, Galina Karabanovich, Jaroslav Roh, Kateřina Vávrová, Přemysl Mladěnka

Chelation is the rational treatment modality in metal overload conditions, but chelators are often non-selective and can, hence, cause an imbalance in the homeostasis of physiological metals including calcium and magnesium. The aim of this study was to develop an affordable, rapid but sensitive and precise method for determining the degree of chelation of calcium and magnesium ions and to employ this method for comparison on a panel of known metal chelators. Spectrophotometric method using o-cresolphthalein complexone (o-CC) was developed and its biological relevance was confirmed in human platelets by impedance aggregometry. The lowest detectable concentration of calcium and magnesium ions by o-CC was 2.5 μM and 2 μM, respectively. The indicator was stable for at least 110 days. Four and seven out of twenty-one chelators strongly chelated calcium and magnesium ions, respectively. Importantly, the chelation effect of clinically used chelators was not negligible. Structure-activity relationships for eight quinolin-8-ols showed improvements in chelation particularly in the cases of dihalogen substitution, and a negative linear relationship between pKa and magnesium chelation was observed. Calcium chelation led to inhibition of platelet aggregation in concentrations corresponding to the complex formation. A novel method for screening of efficacy and safety of calcium and magnesium ion chelation was developed and validated.

螯合是金属超载情况下的合理治疗方式,但螯合剂通常是非选择性的,因此可能导致包括钙和镁在内的生理金属平衡失调。本研究的目的是开发一种经济、快速但灵敏、精确的方法来确定钙镁离子的螯合程度,并将这种方法与已知的金属螯合剂进行比较。研究人员开发了使用邻甲酚酞络合酮(o-CC)的分光光度法,并通过阻抗聚集测定法确认了该方法在人体血小板中的生物相关性。o-CC 对钙离子和镁离子的最低检测浓度分别为 2.5 μM 和 2 μM。该指示剂至少在 110 天内保持稳定。21 种螯合剂中分别有 4 种和 7 种能强烈螯合钙离子和镁离子。重要的是,临床使用的螯合剂的螯合效果也不容忽视。八种喹啉-8-醇的结构-活性关系显示,螯合效果有所改善,尤其是在二卤素取代的情况下,并且观察到 pKa 与镁螯合之间存在负线性关系。钙螯合可抑制与复合物形成浓度相应的血小板聚集。开发并验证了一种用于筛选钙镁离子螯合有效性和安全性的新方法。
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引用次数: 0
Development and validation of an ICP-MS method and its application in assessing heavy metals in whole blood samples among occupationally exposed lead smelting plant workers. ICP-MS 方法的开发和验证及其在评估职业接触铅冶炼厂工人全血样本中重金属含量中的应用。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-17 DOI: 10.1007/s00775-024-02077-7
Kuldip Upadhyay, Ankit Viramgami, Rakesh Balachandar, Ankit Sheth, P Sivaperumal

Occupational exposure to heavy metals affects various organ systems and poses a significant health risk to workers. Consequently, its precise estimation is of clinical concern and warrants the need for an analytical method with reliable precision and accuracy. The current study aimed to develop an analytical method using inductively coupled plasma‒mass spectrometry (ICP-MS) to detect trace to elevated levels of potentially toxic elements in human blood. The sample preparation was optimized using a two-step ramp temperature microwave acid digestion program. The toxic elements were quantified using ICP-MS operating in kinetic energy discrimination (KED) mode, adjusting the data acquisition parameters and instrumental settings. The analytical method was validated using standard performance parameters. Each validation parameter was aligned with the acceptable criteria outlined in standard guidelines. The method achieved optimal linearity (r2 > 0.99), recovery (85.60-112.00%), and precision (1.35-7.03%), was capable of detecting the lowest concentrations of 0.32, 0.28, 0.28, and 0.19 µg/L, and was capable of quantifying trace levels of 1.01, 0.88, 0.90, and 0.62 µg/L for arsenic (As), cadmium (Cd), mercury (Hg), and lead (Pb), respectively. Post-validation, the method was applied to estimate heavy metals in blood samples from 250 Pb-smelting plant workers, revealing potential health implications of occupational exposure. The cohort analysis revealed that demographic and employment factors were associated with elevated blood Pb levels, leading to symptoms and health risks. Clinical analysis revealed that 33.6% of the participants experienced hypertension. These findings highlight the significant health risks associated with elevated blood Pb levels. The weak but significant correlation with systolic blood pressure underscores the need for improved monitoring and workplace safety. This emphasizes the importance of continuous monitoring, targeted interventions, and enhanced occupational hygiene to protect workers' well-being.

职业暴露于重金属会影响各种器官系统,对工人的健康构成重大风险。因此,对重金属的精确估计是临床关注的焦点,需要一种具有可靠精度和准确度的分析方法。本研究旨在开发一种使用电感耦合等离子体质谱法(ICP-MS)检测人体血液中痕量至高浓度潜在有毒元素的分析方法。采用两步斜坡温度微波酸消解程序对样品制备进行了优化。使用 ICP-MS 在动能辨别(KED)模式下操作,调整数据采集参数和仪器设置,对有毒元素进行定量。使用标准性能参数对分析方法进行了验证。每个验证参数都符合标准指南中规定的可接受标准。该方法的线性(r2 > 0.99)、回收率(85.60%-112.00%)和精密度(1.35%-7.03%)均达到最佳水平,最低检测浓度分别为 0.32、0.28、0.28 和 0.19 µg/L,痕量砷(As)、镉(Cd)、汞(Hg)和铅(Pb)的定量水平分别为 1.01、0.88、0.90 和 0.62 µg/L。经过验证后,该方法被用于估算 250 名铅冶炼厂工人血液样本中的重金属含量,揭示了职业暴露对健康的潜在影响。队列分析显示,人口和就业因素与血液中铅含量升高有关,从而导致症状和健康风险。临床分析显示,33.6%的参与者患有高血压。这些发现凸显了血液中铅含量升高所带来的重大健康风险。与收缩压之间微弱但重要的相关性突出表明,有必要改进监测和工作场所安全。这强调了持续监测、有针对性的干预和加强职业卫生以保护工人健康的重要性。
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引用次数: 0
Protoporphyrin IX iron(II) revisited. An overview of the Mössbauer spectroscopic parameters of low-spin porphyrin iron(II) complexes. 原卟啉 IX 铁(II)重温。低自旋卟啉铁(II)配合物的莫斯鲍尔光谱参数概览。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-10-10 DOI: 10.1007/s00775-024-02075-9
Jack Silver, Daniel den Engelsen, Golzar Al-Jaff, Jehad A Taies, Michael T Wilson, George R Fern

Mössbauer parameters of low-spin six-coordinate [Fe(II)(Por)L2] complexes (where Por is a synthetic porphyrin; L is a nitrogenous aliphatic, an aromatic base or a heterocyclic ligand, a P-bonding ligand, CO or CN) and low-spin [Fe(Por)LX] complexes (where L and X are different ligands) are reported. A known point charge calculation approach was extended to investigate how the axial ligands and the four porphyrinato-N atoms generate the observed quadrupole splittings (ΔEQ) for the complexes. Partial quadrupole splitting (p.q.s.) and partial chemical shifts (p.c.s.) values were derived for all the axial ligands, and porphyrins reported in the literature. The values for each porphyrin are different emphasising the importance/uniqueness of the [Fe(PPIX)] moiety, (which is ubiquitous in nature). This new analysis enabled the construction of figures relating p.c.s and p.q.s values. The relationships presented in the figures indicates that strong field ligands such as CO can, and do change the sign of the electric field gradient in the [Fe(II)(Por)L2] complexes. The limiting p.q.s. value a ligand can have and still form a six-coordinate low-spin [Fe(II)(Por)L2] complex is established. It is shown that the control the porphyrin ligands exert on the low-spin Fe(II) atom limits its bonding to a defined range of axial ligands; outside this range the spin state of the iron is unstable and five-coordinate high-spin complexes are favoured. Amongst many conclusions, it was found that oxygen cannot form a stable low-spin [Fe(II)(Por)L(O2)] complex and that oxy-haemoglobin is best described as an [Fe(III)(Por)L(O2-)] complex, the iron is ferric bound to the superoxide molecule.

报告了低自旋六配位[Fe(II)(Por)L2]配合物(其中 Por 为合成卟啉;L 为含氮脂肪族、芳香基或杂环配体、P 键配体、CO 或 CN)和低自旋[Fe(Por)LX]配合物(其中 L 和 X 为不同配体)的莫斯鲍尔参数。研究人员扩展了已知的点电荷计算方法,以研究轴向配体和四个卟啉-N 原子如何产生所观察到的配合物的四极分裂(ΔEQ)。根据文献中报道的所有轴向配体和卟啉,得出了部分四极分裂(p.q.s.)和部分化学位移(p.c.s.)值。每种卟啉的值都不同,强调了[Fe(PPIX)]分子(在自然界中无处不在)的重要性/独特性。通过这一新的分析,可以绘制出 p.c.s 和 p.q.s 值的相关图表。图中显示的关系表明,强场配体(如 CO)可以而且确实改变了[Fe(II)(Por)L2]复合物中电场梯度的符号。确定了配体在形成六配位低自旋[Fe(II)(Por)L2]配合物时的极限 p.q.s. 值。研究表明,卟啉配体对低自旋铁(II)原子的控制将其键合限制在一个确定的轴向配体范围内;超出这个范围,铁的自旋状态就不稳定,五配位高自旋配合物就会受到青睐。在众多结论中,我们发现氧气不能形成稳定的低自旋[Fe(II)(Por)L(O2)]复合物,而氧血红蛋白最适合描述为[Fe(III)(Por)L(O2-)]复合物,铁与超氧分子结合。
{"title":"Protoporphyrin IX iron(II) revisited. An overview of the Mössbauer spectroscopic parameters of low-spin porphyrin iron(II) complexes.","authors":"Jack Silver, Daniel den Engelsen, Golzar Al-Jaff, Jehad A Taies, Michael T Wilson, George R Fern","doi":"10.1007/s00775-024-02075-9","DOIUrl":"https://doi.org/10.1007/s00775-024-02075-9","url":null,"abstract":"<p><p>Mössbauer parameters of low-spin six-coordinate [Fe(II)(Por)L<sub>2</sub>] complexes (where Por is a synthetic porphyrin; L is a nitrogenous aliphatic, an aromatic base or a heterocyclic ligand, a P-bonding ligand, CO or CN) and low-spin [Fe(Por)LX] complexes (where L and X are different ligands) are reported. A known point charge calculation approach was extended to investigate how the axial ligands and the four porphyrinato-N atoms generate the observed quadrupole splittings (ΔE<sub>Q</sub>) for the complexes. Partial quadrupole splitting (p.q.s.) and partial chemical shifts (p.c.s.) values were derived for all the axial ligands, and porphyrins reported in the literature. The values for each porphyrin are different emphasising the importance/uniqueness of the [Fe(PPIX)] moiety, (which is ubiquitous in nature). This new analysis enabled the construction of figures relating p.c.s and p.q.s values. The relationships presented in the figures indicates that strong field ligands such as CO can, and do change the sign of the electric field gradient in the [Fe(II)(Por)L<sub>2</sub>] complexes. The limiting p.q.s. value a ligand can have and still form a six-coordinate low-spin [Fe(II)(Por)L<sub>2</sub>] complex is established. It is shown that the control the porphyrin ligands exert on the low-spin Fe(II) atom limits its bonding to a defined range of axial ligands; outside this range the spin state of the iron is unstable and five-coordinate high-spin complexes are favoured. Amongst many conclusions, it was found that oxygen cannot form a stable low-spin [Fe(II)(Por)L(O<sub>2</sub>)] complex and that oxy-haemoglobin is best described as an [Fe(III)(Por)L(O<sub>2</sub><sup>-</sup>)] complex, the iron is ferric bound to the superoxide molecule.</p>","PeriodicalId":603,"journal":{"name":"JBIC Journal of Biological Inorganic Chemistry","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2024-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142387178","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Quantitative proteomic analysis reveals Ga(III) polypyridyl catecholate complexes disrupt Aspergillus fumigatus mitochondrial function. 定量蛋白质组分析表明,Ga(III)多吡啶儿茶酚复合物会破坏曲霉线粒体的功能。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-09-23 DOI: 10.1007/s00775-024-02074-w
Magdalena Piatek, Brunella Grassiri, Lewis More O'Ferrall, Anna Maria Piras, Giovanna Batoni, Semih Esin, Christine O'Connor, Darren Griffith, Anne Marie Healy, Kevin Kavanagh

Infections caused by the airborne fungal pathogen, Aspergillus fumigatus, are increasing in severity due to growing numbers of immunocompromised individuals and the increasing incidence of antifungal drug resistance, exacerbating treatment challenges. Gallium has proven to be a strong candidate in the fight against microbial pathogens due to its iron-mimicking capability and substitution of Ga(III) in place of Fe(III), disrupting iron-dependent pathways. Since the antimicrobial properties of 2,2'-bipyridine and derivatives have been previously reported, we assessed the in vitro activity and proteomic effects of a recently reported heteroleptic Ga(III) polypyridyl catecholate compound against A. fumigatus. This compound has demonstrated promising growth-inhibition and impact on the A. fumigatus proteome compared to untreated controls. Proteins associated with DNA replication and repair mechanisms along with lipid metabolism and the oxidative stress responses were elevated in abundance compared to control. Crucially, a large number of mitochondrial proteins were reduced in abundance. Respiration is an important source of energy to fuel metabolic processes required for growth, survival and virulence, the disruption of which may be a viable strategy for the treatment of microbial infections.

由于免疫力低下的人越来越多,加上抗真菌药物耐药性的发生率越来越高,空气传播的真菌病原体曲霉菌引起的感染越来越严重,从而加剧了治疗难题。事实证明,镓具有仿铁能力,并能以 Ga(III) 取代 Fe(III),破坏依赖铁的途径,因此是抗击微生物病原体的有力候选物质。由于 2,2'-联吡啶及其衍生物的抗菌特性之前已有报道,我们评估了最近报道的一种杂环Ga(III)多吡啶儿茶酚化合物对烟曲霉的体外活性和蛋白质组学效应。与未经处理的对照组相比,该化合物表现出了良好的生长抑制效果,并对烟曲霉蛋白质组产生了影响。与对照组相比,与 DNA 复制和修复机制以及脂质代谢和氧化应激反应相关的蛋白质丰度有所提高。最重要的是,大量线粒体蛋白质的丰度降低了。呼吸作用是促进生长、存活和毒力所需的代谢过程的重要能量来源,破坏呼吸作用可能是治疗微生物感染的一种可行策略。
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引用次数: 0
Antibacterial activity of Au(I), Pt(II), and Ir(III) biotin conjugates prepared by the iClick reaction: influence of the metal coordination sphere on the biological activity 通过 iClick 反应制备的 Au(I)、Pt(II) 和 Ir(III) 生物素共轭物的抗菌活性:金属配位层对生物活性的影响。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-29 DOI: 10.1007/s00775-024-02073-x
Dominik Moreth, Lars Stevens-Cullinane, Thomas W. Rees, Victoria V. L. Müller, Adrien Pasquier, Ok-Ryul Song, Scott Warchal, Michael Howell, Jeannine Hess, Ulrich Schatzschneider

A series of biotin-functionalized transition metal complexes was prepared by iClick reaction from the corresponding azido complexes with a novel alkyne-functionalized biotin derivative ([Au(triazolatoR,R′)(PPh3)], [Pt(dpb)(triazolatoR,R′)], [Pt(triazolatoR,R′)(terpy)]PF6, and [Ir(ppy)(triazolatoR,R′)(terpy)]PF6 with dpb = 1,3-di(2-pyridyl)benzene, ppy = 2-phenylpyridine, and terpy = 2,2′:6′,2′′-terpyridine and R = C6H5, R′ = biotin). The complexes were compared to reference compounds lacking the biotin moiety. The binding affinity toward avidin and streptavidin was evaluated with the HABA assay as well as isothermal titration calorimetry (ITC). All compounds exhibit the same binding stoichiometry of complex-to-avidin of 4:1, but the ITC results show that the octahedral Ir(III) compound exhibits a higher binding affinity than the square-planar Pt(II) complex. The antibacterial activity of the compounds was evaluated on a series of Gram-negative and Gram-positive bacterial strains. In particular, the neutral Au(I) and Pt(II) complexes showed significant antibacterial activity against Staphylococcus aureus and Enterococcus faecium at very low micromolar concentrations. The cytotoxicity against a range of eukaryotic cell lines was studied and revealed that the octahedral Ir(III) complex was non-toxic, while the square-planar Pt(II) and linear Au(I) complexes displayed non-selective micromolar activity.

Graphical abstract

通过 iClick 反应制备了一系列生物素官能化过渡金属配合物,这些配合物由相应的叠氮配合物与新型炔官能化生物素衍生物([Au(triazolatoR、R')(PPh3)]、[Pt(dpb)(triazolatoR,R')]、[Pt(triazolatoR,R')(terpy)]PF6 和[Ir(ppy)(triazolatoR,R')(terpy)]PF6,其中 dpb = 1,3-二(2-吡啶基)苯,ppy = 2-苯基吡啶,terpy = 2,2':6',2''-三吡啶,R = C6H5,R' = 生物素)。这些复合物与缺少生物素分子的参考化合物进行了比较。用 HABA 分析法和等温滴定量热法(ITC)评估了与阿维丁和链霉亲和素的结合亲和力。所有化合物都表现出相同的结合比例,即复合物与阿维蛋白的结合比例为 4:1,但等温滴定结果表明,八面体 Ir(III) 复合物比方形铂(II)复合物表现出更高的结合亲和力。在一系列革兰氏阴性和革兰氏阳性细菌菌株上评估了这些化合物的抗菌活性。其中,中性 Au(I) 和 Pt(II) 复合物在极低的微摩尔浓度下对金黄色葡萄球菌和粪肠球菌具有显著的抗菌活性。对一系列真核细胞系的细胞毒性进行了研究,结果表明八面体 Ir(III) 复合物无毒,而方形 Pt(II) 和线性 Au(I) 复合物则显示出非选择性的微摩尔活性。
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引用次数: 0
Understanding the role of negative charge in the scaffold of an artificial enzyme for CO2 hydrogenation on catalysis 了解负电荷在二氧化碳氢化人工催化酶支架中的作用。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-29 DOI: 10.1007/s00775-024-02070-0
Regina E. Trevino, Jack T. Fuller III, Deseree J. Reid, Joseph A. Laureanti, Bojana Ginovska, John C. Linehan, Wendy J. Shaw

We have approached the construction of an artificial enzyme by employing a robust protein scaffold, lactococcal multidrug resistance regulator, LmrR, providing a structured secondary and outer coordination spheres around a molecular rhodium complex, [RhI(PEt2NglyPEt2)2]. Previously, we demonstrated a 2–3 fold increase in activity for one Rh-LmrR construct by introducing positive charge in the secondary coordination sphere. In this study, a series of variants was made through site-directed mutagenesis where the negative charge is located in the secondary sphere or outer coordination sphere, with additional variants made with increasingly negative charge in the outer coordination sphere while keeping a positive charge in the secondary sphere. Placing a negative charge in the secondary or outer coordination sphere demonstrates decreased activity by a factor of two compared to the wild-type Rh-LmrR. Interestingly, addition of positive charge in the secondary sphere, with the negatively charged outer coordination sphere restores activity. Vibrational and NMR spectroscopy suggest minimal changes to the electronic density at the rhodium center, regardless of inclusion of a negative or positive charge in the secondary sphere, suggesting another mechanism is impacting catalytic activity, explored in the discussion.

Graphical abstract

我们利用乳球菌多药耐药性调节因子 LmrR 这一强健的蛋白质支架,在分子铑复合物 [RhI(PEt2NglyPEt2)2]- 周围提供了一个结构化的次级和外部配位球,从而构建了一种人工酶。此前,我们通过在次级配位球中引入正电荷,证明一种 Rh-LmrR 构建物的活性提高了 2-3 倍。在这项研究中,我们通过定点突变技术制作了一系列变体,这些变体的负电荷位于次级配位层或外配位层,另外还制作了一些变体,在次级配位层保持正电荷的同时,外配位层的负电荷越来越多。与野生型 Rh-LmrR 相比,在次配位球或外配位球中加入负电荷会使活性降低两倍。有趣的是,在带负电荷的外配位球中加入正电荷后,次配位球的活性就恢复了。振动光谱和核磁共振光谱显示,无论在次级配位层中加入负电荷还是正电荷,铑中心的电子密度变化都很小,这表明影响催化活性的是另一种机制。
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引用次数: 0
Analyzing the FMN—heme interdomain docking interactions in neuronal and inducible NOS isoforms by pulsed EPR experiments and conformational distribution modeling 通过脉冲 EPR 实验和构象分布建模分析神经元和诱导型 NOS 同工酶中 FMN-血红素域间对接相互作用。
IF 2.7 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-13 DOI: 10.1007/s00775-024-02068-8
Andrei V. Astashkin, Yadav Prasad Gyawali, Ting Jiang, Haikun Zhang, Changjian Feng

Nitric oxide synthases (NOSs), a family of flavo-hemoproteins with relatively rigid domains linked by flexible regions, require optimal FMN domain docking to the heme domain for efficient interdomain electron transfer (IET). To probe the FMN-heme interdomain docking, the magnetic dipole interactions between the FMN semiquinone radical (FMNH) and the low-spin ferric heme centers in oxygenase/FMN (oxyFMN) constructs of neuronal and inducible NOS (nNOS and iNOS, respectively) were measured using the relaxation-induced dipolar modulation enhancement (RIDME) technique. The FMNH RIDME data were analyzed using the mesoscale Monte Carlo calculations of conformational distributions of NOS, which were improved to account for the native degrees of freedom of the amino acid residues constituting the flexible interdomain tethers. This combined computational and experimental analysis allowed for the estimation of the stabilization energies and populations of the docking complexes of calmodulin (CaM) and the FMN domain with the heme domain. Moreover, combining the five-pulse and scaled four-pulse RIDME data into a single trace has significantly reduced the uncertainty in the estimated docking probabilities. The obtained FMN—heme domain docking energies for nNOS and iNOS were similar (-3.8 kcal/mol), in agreement with the high degree of conservation of the FMN—heme domain docking interface between the NOS isoforms. In spite of the similar energetics, the FMN—heme domain docking probabilities in nNOS and iNOS oxyFMN were noticeably different (~ 0.19 and 0.23, respectively), likely due to differences in the lengths of the FMN—heme interdomain tethers and the docking interface topographies. The analysis based on the IET theory and RIDME experiments indicates that the variations in conformational dynamics may account for half of the difference in the FMN—heme IET rates between the two NOS isoforms.

Graphical abstract

一氧化氮合酶(NOS)是黄素血蛋白的一个家族,其相对刚性的结构域由柔性区域连接,需要最佳的 FMN 结构域与血红素结构域对接,以实现高效的结构域间电子传递(IET)。为了探究 FMN-血红素域间对接,使用弛豫诱导偶极调制增强(RIDME)技术测量了神经元和诱导性 NOS(分别为 nNOS 和 iNOS)的氧酶/FMN(oxyFMN)构建体中 FMN 半醌自由基(FMNH-)与低自旋铁血红素中心之间的磁偶极相互作用。利用 NOS 构象分布的中尺度蒙特卡罗计算对 FMNH- RIDME 数据进行了分析,并对计算结果进行了改进,以考虑构成柔性域间系链的氨基酸残基的原生自由度。通过这种计算与实验相结合的分析,可以估算钙调蛋白(CaM)和 FMN 结构域与血红素结构域对接复合物的稳定能量和种群。此外,将五脉冲和按比例缩放的四脉冲 RIDME 数据合并成单一迹线,大大降低了估计对接概率的不确定性。nNOS 和 iNOS 的 FMN-血红素结构域对接能量相似(-3.8 kcal/mol),这与 NOS 异构体之间 FMN-血红素结构域对接界面的高度保守性一致。尽管能量相似,但 nNOS 和 iNOS oxyFMN 的 FMN-血红素结构域对接概率却明显不同(分别为约 0.19 和 0.23),这可能是由于 FMN-血红素结构域间拴系的长度和对接界面的拓扑结构不同造成的。基于 IET 理论和 RIDME 实验的分析表明,构象动力学的变化可能是造成两种 NOS 异构体之间 FMN-血红素 IET 速率差异的一半原因。
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JBIC Journal of Biological Inorganic Chemistry
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