Pub Date : 2025-03-12DOI: 10.1038/s41586-025-08729-1
Jonathan Kasdin, Alison Duffy, Nathan Nadler, Arnav Raha, Adrienne L. Fairhall, Kimberly L. Stachenfeld, Vikram Gadagkar
Many natural motor skills, such as speaking or locomotion, are acquired through a process of trial-and-error learning over the course of development. It has long been hypothesized, motivated by observations in artificial learning experiments, that dopamine has a crucial role in this process. Dopamine in the basal ganglia is thought to guide reward-based trial-and-error learning by encoding reward prediction errors1, decreasing after worse-than-predicted reward outcomes and increasing after better-than-predicted ones. Our previous work in adult zebra finches—in which we changed the perceived song quality with distorted auditory feedback—showed that dopamine in Area X, the singing-related basal ganglia, encodes performance prediction error: dopamine is suppressed after worse-than-predicted (distorted syllables) and activated after better-than-predicted (undistorted syllables) performance2. However, it remains unknown whether the learning of natural behaviours, such as developmental vocal learning, occurs through dopamine-based reinforcement. Here we tracked song learning trajectories in juvenile zebra finches and used fibre photometry3 to monitor concurrent dopamine activity in Area X. We found that dopamine was activated after syllable renditions that were closer to the eventual adult version of the song, compared with recent renditions, and suppressed after renditions that were further away. Furthermore, the relationship between dopamine and song fluctuations revealed that dopamine predicted the future evolution of song, suggesting that dopamine drives behaviour. Finally, dopamine activity was explained by the contrast between the quality of the current rendition and the recent history of renditions—consistent with dopamine’s hypothesized role in encoding prediction errors in an actor–critic reinforcement-learning model4,5. Reinforcement-learning algorithms6 have emerged as a powerful class of model to explain learning in reward-based laboratory tasks, as well as for driving autonomous learning in artificial intelligence7. Our results suggest that complex natural behaviours in biological systems can also be acquired through dopamine-mediated reinforcement learning.
{"title":"Natural behaviour is learned through dopamine-mediated reinforcement","authors":"Jonathan Kasdin, Alison Duffy, Nathan Nadler, Arnav Raha, Adrienne L. Fairhall, Kimberly L. Stachenfeld, Vikram Gadagkar","doi":"10.1038/s41586-025-08729-1","DOIUrl":"https://doi.org/10.1038/s41586-025-08729-1","url":null,"abstract":"<p>Many natural motor skills, such as speaking or locomotion, are acquired through a process of trial-and-error learning over the course of development. It has long been hypothesized, motivated by observations in artificial learning experiments, that dopamine has a crucial role in this process. Dopamine in the basal ganglia is thought to guide reward-based trial-and-error learning by encoding reward prediction errors<sup>1</sup>, decreasing after worse-than-predicted reward outcomes and increasing after better-than-predicted ones. Our previous work in adult zebra finches—in which we changed the perceived song quality with distorted auditory feedback—showed that dopamine in Area X, the singing-related basal ganglia, encodes performance prediction error: dopamine is suppressed after worse-than-predicted (distorted syllables) and activated after better-than-predicted (undistorted syllables) performance<sup>2</sup>. However, it remains unknown whether the learning of natural behaviours, such as developmental vocal learning, occurs through dopamine-based reinforcement. Here we tracked song learning trajectories in juvenile zebra finches and used fibre photometry<sup>3</sup> to monitor concurrent dopamine activity in Area X. We found that dopamine was activated after syllable renditions that were closer to the eventual adult version of the song, compared with recent renditions, and suppressed after renditions that were further away. Furthermore, the relationship between dopamine and song fluctuations revealed that dopamine predicted the future evolution of song, suggesting that dopamine drives behaviour. Finally, dopamine activity was explained by the contrast between the quality of the current rendition and the recent history of renditions—consistent with dopamine’s hypothesized role in encoding prediction errors in an actor–critic reinforcement-learning model<sup>4,5</sup>. Reinforcement-learning algorithms<sup>6</sup> have emerged as a powerful class of model to explain learning in reward-based laboratory tasks, as well as for driving autonomous learning in artificial intelligence<sup>7</sup>. Our results suggest that complex natural behaviours in biological systems can also be acquired through dopamine-mediated reinforcement learning.</p>","PeriodicalId":18787,"journal":{"name":"Nature","volume":"7 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143608119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-12DOI: 10.1038/d41586-025-00734-8
Christian M. Schürch
Immune cells called natural killer cells can target and eliminate tumours. The gene expression and spatial distribution of the immune cells in the tumour microenvironment indicates whether liver cancer will recur after surgery.
{"title":"Liver cancer recurrence predicted by immune-cell location and gene expression","authors":"Christian M. Schürch","doi":"10.1038/d41586-025-00734-8","DOIUrl":"https://doi.org/10.1038/d41586-025-00734-8","url":null,"abstract":"Immune cells called natural killer cells can target and eliminate tumours. The gene expression and spatial distribution of the immune cells in the tumour microenvironment indicates whether liver cancer will recur after surgery.","PeriodicalId":18787,"journal":{"name":"Nature","volume":"24 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143608159","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Comparative genomic studies can identify genes under evolutionary constraint or specialized for trait innovation. Growing evidence suggests that evolutionary constraint also acts on non-coding regulatory sequences, exerting significant impacts on fitness-related traits, although it has yet to be thoroughly explored in plants. Using the assay for transposase-accessible chromatin by sequencing (ATAC-seq), we profile over 80,000 maize accessible chromatin regions (ACRs), revealing that ACRs evolve faster than coding genes, with about one-third being maize-specific and regulating genes associated with speciation. We highlight the role of transposable elements (TEs) in driving intraspecific innovation of ACRs and identify hundreds of candidate ACRs potentially involved in transcriptional rewiring during maize domestication. Additionally, we demonstrate the importance of accessible chromatin in maintaining subgenome dominance and controlling complex trait variations. This study establishes a framework for analyzing the evolutionary trajectory of plant regulatory sequences and offers candidate loci for downstream exploration and application in maize breeding.
{"title":"Constraint of accessible chromatins maps regulatory loci involved in maize speciation and domestication","authors":"Yuting Liu, Xiang Gao, Hongjun Liu, Xuerong Yang, Xiao Liu, Fang Xu, Yuzhi Zhu, Qingyun Li, Liangliang Huang, Fang Yang, Jinsheng Lai, Junpeng Shi","doi":"10.1038/s41467-025-57932-1","DOIUrl":"https://doi.org/10.1038/s41467-025-57932-1","url":null,"abstract":"<p>Comparative genomic studies can identify genes under evolutionary constraint or specialized for trait innovation. Growing evidence suggests that evolutionary constraint also acts on non-coding regulatory sequences, exerting significant impacts on fitness-related traits, although it has yet to be thoroughly explored in plants. Using the assay for transposase-accessible chromatin by sequencing (ATAC-seq), we profile over 80,000 maize accessible chromatin regions (ACRs), revealing that ACRs evolve faster than coding genes, with about one-third being maize-specific and regulating genes associated with speciation. We highlight the role of transposable elements (TEs) in driving intraspecific innovation of ACRs and identify hundreds of candidate ACRs potentially involved in transcriptional rewiring during maize domestication. Additionally, we demonstrate the importance of accessible chromatin in maintaining subgenome dominance and controlling complex trait variations. This study establishes a framework for analyzing the evolutionary trajectory of plant regulatory sequences and offers candidate loci for downstream exploration and application in maize breeding.</p>","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":"32 1","pages":""},"PeriodicalIF":16.6,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143608258","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-12DOI: 10.1038/d41586-025-00776-y
Hear the biggest stories from the world of science | 12 March 2025
{"title":"Sapphire anvils squeeze metals atomically-thin","authors":"","doi":"10.1038/d41586-025-00776-y","DOIUrl":"https://doi.org/10.1038/d41586-025-00776-y","url":null,"abstract":"Hear the biggest stories from the world of science | 12 March 2025","PeriodicalId":18787,"journal":{"name":"Nature","volume":"183 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143608427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-12DOI: 10.1038/s41467-025-56628-w
Stefan Groeneweg, Ferdy S. van Geest, Mariano Martín, Mafalda Dias, Jonathan Frazer, Carolina Medina-Gomez, Rosalie B. T. M. Sterenborg, Hao Wang, Anna Dolcetta-Capuzzo, Linda J. de Rooij, Alexander Teumer, Ayhan Abaci, Erica L. T. van den Akker, Gautam P. Ambegaonkar, Christine M. Armour, Iiuliu Bacos, Priyanka Bakhtiani, Diana Barca, Andrew J. Bauer, Sjoerd A. A. van den Berg, Amanda van den Berge, Enrico Bertini, Ingrid M. van Beynum, Nicola Brunetti-Pierri, Doris Brunner, Marco Cappa, Gerarda Cappuccio, Barbara Castellotti, Claudia Castiglioni, Krishna Chatterjee, Alexander Chesover, Peter Christian, Jet Coenen-van der Spek, Irenaeus F. M. de Coo, Regis Coutant, Dana Craiu, Patricia Crock, Christian DeGoede, Korcan Demir, Cheyenne Dewey, Alice Dica, Paul Dimitri, Marjolein H. G. Dremmen, Rachana Dubey, Anina Enderli, Jan Fairchild, Jonathan Gallichan, Luigi Garibaldi, Belinda George, Evelien F. Gevers, Erin Greenup, Annette Hackenberg, Zita Halász, Bianka Heinrich, Anna C. Hurst, Tony Huynh, Amber R. Isaza, Anna Klosowska, Marieke M. van der Knoop, Daniel Konrad, David A. Koolen, Heiko Krude, Abhishek Kulkarni, Alexander Laemmle, Stephen H. LaFranchi, Amy Lawson-Yuen, Jan Lebl, Selmar Leeuwenburgh, Michaela Linder-Lucht, Anna López Martí, Cláudia F. Lorea, Charles M. Lourenço, Roelineke J. Lunsing, Greta Lyons, Jana Krenek Malikova, Edna E. Mancilla, Kenneth L. McCormick, Anne McGowan, Veronica Mericq, Felipe Monti Lora, Carla Moran, Katalin E. Muller, Lindsey E. Nicol, Isabelle Oliver-Petit, Laura Paone, Praveen G. Paul, Michel Polak, Francesco Porta, Fabiano O. Poswar, Christina Reinauer, Klara Rozenkova, Rowen Seckold, Tuba Seven Menevse, Peter Simm, Anna Simon, Yogen Singh, Marco Spada, Milou A. M. Stals, Merel T. Stegenga, Athanasia Stoupa, Gopinath M. Subramanian, Lilla Szeifert, Davide Tonduti, Serap Turan, Joel Vanderniet, Adri van der Walt, Jean-Louis Wémeau, Anne-Marie van Wermeskerken, Jolanta Wierzba, Marie-Claire Y. de Wit, Nicole I. Wolf, Michael Wurm, Federica Zibordi, Amnon Zung, Nitash Zwaveling-Soonawala, Fernando Rivadeneira, Marcel E. Meima, Debora S. Marks, Juan P. Nicola, Chi-Hua Chen, Marco Medici, W. Edward Visser
Predicting and quantifying phenotypic consequences of genetic variants in rare disorders is a major challenge, particularly pertinent for ‘actionable’ genes such as thyroid hormone transporter MCT8 (encoded by the X-linked SLC16A2 gene), where loss-of-function (LoF) variants cause a rare neurodevelopmental and (treatable) metabolic disorder in males. The combination of deep phenotyping data with functional and computational tests and with outcomes in population cohorts, enabled us to: (i) identify the genetic aetiology of divergent clinical phenotypes of MCT8 deficiency with genotype-phenotype relationships present across survival and 24 out of 32 disease features; (ii) demonstrate a mild phenocopy in ~400,000 individuals with common genetic variants in MCT8; (iii) assess therapeutic effectiveness, which did not differ among LoF-categories; (iv) advance structural insights in normal and mutated MCT8 by delineating seven critical functional domains; (v) create a pathogenicity-severity MCT8 variant classifier that accurately predicted pathogenicity (AUC:0.91) and severity (AUC:0.86) for 8151 variants. Our information-dense mapping provides a generalizable approach to advance multiple dimensions of rare genetic disorders.
{"title":"Mapping variants in thyroid hormone transporter MCT8 to disease severity by genomic, phenotypic, functional, structural and deep learning integration","authors":"Stefan Groeneweg, Ferdy S. van Geest, Mariano Martín, Mafalda Dias, Jonathan Frazer, Carolina Medina-Gomez, Rosalie B. T. M. Sterenborg, Hao Wang, Anna Dolcetta-Capuzzo, Linda J. de Rooij, Alexander Teumer, Ayhan Abaci, Erica L. T. van den Akker, Gautam P. Ambegaonkar, Christine M. Armour, Iiuliu Bacos, Priyanka Bakhtiani, Diana Barca, Andrew J. Bauer, Sjoerd A. A. van den Berg, Amanda van den Berge, Enrico Bertini, Ingrid M. van Beynum, Nicola Brunetti-Pierri, Doris Brunner, Marco Cappa, Gerarda Cappuccio, Barbara Castellotti, Claudia Castiglioni, Krishna Chatterjee, Alexander Chesover, Peter Christian, Jet Coenen-van der Spek, Irenaeus F. M. de Coo, Regis Coutant, Dana Craiu, Patricia Crock, Christian DeGoede, Korcan Demir, Cheyenne Dewey, Alice Dica, Paul Dimitri, Marjolein H. G. Dremmen, Rachana Dubey, Anina Enderli, Jan Fairchild, Jonathan Gallichan, Luigi Garibaldi, Belinda George, Evelien F. Gevers, Erin Greenup, Annette Hackenberg, Zita Halász, Bianka Heinrich, Anna C. Hurst, Tony Huynh, Amber R. Isaza, Anna Klosowska, Marieke M. van der Knoop, Daniel Konrad, David A. Koolen, Heiko Krude, Abhishek Kulkarni, Alexander Laemmle, Stephen H. LaFranchi, Amy Lawson-Yuen, Jan Lebl, Selmar Leeuwenburgh, Michaela Linder-Lucht, Anna López Martí, Cláudia F. Lorea, Charles M. Lourenço, Roelineke J. Lunsing, Greta Lyons, Jana Krenek Malikova, Edna E. Mancilla, Kenneth L. McCormick, Anne McGowan, Veronica Mericq, Felipe Monti Lora, Carla Moran, Katalin E. Muller, Lindsey E. Nicol, Isabelle Oliver-Petit, Laura Paone, Praveen G. Paul, Michel Polak, Francesco Porta, Fabiano O. Poswar, Christina Reinauer, Klara Rozenkova, Rowen Seckold, Tuba Seven Menevse, Peter Simm, Anna Simon, Yogen Singh, Marco Spada, Milou A. M. Stals, Merel T. Stegenga, Athanasia Stoupa, Gopinath M. Subramanian, Lilla Szeifert, Davide Tonduti, Serap Turan, Joel Vanderniet, Adri van der Walt, Jean-Louis Wémeau, Anne-Marie van Wermeskerken, Jolanta Wierzba, Marie-Claire Y. de Wit, Nicole I. Wolf, Michael Wurm, Federica Zibordi, Amnon Zung, Nitash Zwaveling-Soonawala, Fernando Rivadeneira, Marcel E. Meima, Debora S. Marks, Juan P. Nicola, Chi-Hua Chen, Marco Medici, W. Edward Visser","doi":"10.1038/s41467-025-56628-w","DOIUrl":"https://doi.org/10.1038/s41467-025-56628-w","url":null,"abstract":"<p>Predicting and quantifying phenotypic consequences of genetic variants in rare disorders is a major challenge, particularly pertinent for ‘actionable’ genes such as thyroid hormone transporter MCT8 (encoded by the X-linked <i>SLC16A2</i> gene), where loss-of-function (LoF) variants cause a rare neurodevelopmental and (treatable) metabolic disorder in males. The combination of deep phenotyping data with functional and computational tests and with outcomes in population cohorts, enabled us to: (i) identify the genetic aetiology of divergent clinical phenotypes of MCT8 deficiency with genotype-phenotype relationships present across survival and 24 out of 32 disease features; (ii) demonstrate a mild phenocopy in ~400,000 individuals with common genetic variants in MCT8; (iii) assess therapeutic effectiveness, which did not differ among LoF-categories; (iv) advance structural insights in normal and mutated MCT8 by delineating seven critical functional domains; (v) create a pathogenicity-severity MCT8 variant classifier that accurately predicted pathogenicity (AUC:0.91) and severity (AUC:0.86) for 8151 variants. Our information-dense mapping provides a generalizable approach to advance multiple dimensions of rare genetic disorders.</p>","PeriodicalId":19066,"journal":{"name":"Nature Communications","volume":"54 1","pages":""},"PeriodicalIF":16.6,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143608515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Oxygen plays a critical role in early neural development in brains, particularly before establishment of complete vasculature; however, it has seldom been investigated due to technical limitations. This study uses an in vitro human cerebral organoid model with multiomic analysis, integrating advanced microscopies and single-cell RNA sequencing, to monitor tissue oxygen tension during neural development. Results reveal a key period between weeks 4 and 6 with elevated intra-organoid oxygen tension, altered energy homeostasis, and rapid neurogenesis within the organoids. The timed oxygen tension elevation can be suppressed by hypoxia treatment or silencing of neuroglobin gene. This study provides insights into the role of oxygen in early neurogenesis from functional, genotypic, phenotypic, and proteomic aspects. These findings highlight the significance of the timed tissue oxygen tension elevation in neurogenesis and provide insights into the role of neuroglobin in neural development, with potential implications for understanding neurodegenerative diseases and therapeutic strategies.
{"title":"Shaping early neural development by timed elevated tissue oxygen tension: Insights from multiomic analysis on human cerebral organoids","authors":"Yuan-Hsuan Liu, Meng-Ting Chung, Hsi-Chieh Lin, Tse-Ang Lee, Ya-Jen Cheng, Chien-Chang Huang, Hsiao-Mei Wu, Yi-Chung Tung","doi":"","DOIUrl":"","url":null,"abstract":"<div >Oxygen plays a critical role in early neural development in brains, particularly before establishment of complete vasculature; however, it has seldom been investigated due to technical limitations. This study uses an in vitro human cerebral organoid model with multiomic analysis, integrating advanced microscopies and single-cell RNA sequencing, to monitor tissue oxygen tension during neural development. Results reveal a key period between weeks 4 and 6 with elevated intra-organoid oxygen tension, altered energy homeostasis, and rapid neurogenesis within the organoids. The timed oxygen tension elevation can be suppressed by hypoxia treatment or silencing of neuroglobin gene. This study provides insights into the role of oxygen in early neurogenesis from functional, genotypic, phenotypic, and proteomic aspects. These findings highlight the significance of the timed tissue oxygen tension elevation in neurogenesis and provide insights into the role of neuroglobin in neural development, with potential implications for understanding neurodegenerative diseases and therapeutic strategies.</div>","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"11 11","pages":""},"PeriodicalIF":11.7,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.science.org/doi/reader/10.1126/sciadv.ado1164","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143602911","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jesper Fischer Ehmsen, Niia Nikolova, Daniel Elmstrøm Christensen, Leah Banellis, Rebecca A. Böhme, Malthe Brændholt, Arthur S. Courtin, Camilla E. Krænge, Alexandra G. Mitchell, Camila Sardeto Deolindo, Christian Holm Steenkjær, Melina Vejlø, Christoph Mathys, Micah G. Allen, Francesca Fardo
The human brain has a remarkable ability to learn and update its beliefs about the world. Here, we investigate how thermosensory learning shapes our subjective experience of temperature and the misperception of pain in response to harmless thermal stimuli. Through computational modeling, we demonstrate that the brain uses a probabilistic predictive coding scheme to update beliefs about temperature changes based on their uncertainty. We find that these expectations directly modulate the perception of pain in the thermal grill illusion. Quantitative microstructural brain imaging further revealed that individual variability in computational parameters related to uncertainty-driven learning and decision-making is reflected in the microstructure of brain regions such as the precuneus, posterior cingulate gyrus, cerebellum, as well as basal ganglia and brainstem. These findings provide a framework to understand how the brain infers pain from innocuous thermal inputs, with important implications for the etiology of thermosensory symptoms under chronic pain conditions.
{"title":"Thermosensory predictive coding underpins an illusion of pain","authors":"Jesper Fischer Ehmsen, Niia Nikolova, Daniel Elmstrøm Christensen, Leah Banellis, Rebecca A. Böhme, Malthe Brændholt, Arthur S. Courtin, Camilla E. Krænge, Alexandra G. Mitchell, Camila Sardeto Deolindo, Christian Holm Steenkjær, Melina Vejlø, Christoph Mathys, Micah G. Allen, Francesca Fardo","doi":"","DOIUrl":"","url":null,"abstract":"<div >The human brain has a remarkable ability to learn and update its beliefs about the world. Here, we investigate how thermosensory learning shapes our subjective experience of temperature and the misperception of pain in response to harmless thermal stimuli. Through computational modeling, we demonstrate that the brain uses a probabilistic predictive coding scheme to update beliefs about temperature changes based on their uncertainty. We find that these expectations directly modulate the perception of pain in the thermal grill illusion. Quantitative microstructural brain imaging further revealed that individual variability in computational parameters related to uncertainty-driven learning and decision-making is reflected in the microstructure of brain regions such as the precuneus, posterior cingulate gyrus, cerebellum, as well as basal ganglia and brainstem. These findings provide a framework to understand how the brain infers pain from innocuous thermal inputs, with important implications for the etiology of thermosensory symptoms under chronic pain conditions.</div>","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"11 11","pages":""},"PeriodicalIF":11.7,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.science.org/doi/reader/10.1126/sciadv.adq0261","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143602923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Whether restoration actions achieve full ecological recovery is still debated. This is particularly controversial in the marine realm, where the success of restoration is mostly evaluated in terms of the short-term survival of transplanted organisms. In view of this, we combined population and trait-based approaches to explore the long-term effectiveness of active restoration of a key Mediterranean octocoral. For this purpose, an assemblage with restored Corallium rubrum colonies was monitored over 10 years and compared with a nearby reference site. Our results revealed growth of the transplanted colonies followed by a change in the functional structure (i.e., dominance and diversity of traits) of the restored assemblage. This change was related not only to the development of the coral but also to the arrival and/or increase of species with different traits. Overall, our findings provide an example of how active restoration of long-lived octocorals can be an effective tool for recovering high-diverse coralligenous assemblages at decadal timescales.
{"title":"Active restoration of a long-lived octocoral drives rapid functional recovery in a temperate reef","authors":"Yanis Zentner, Joaquim Garrabou, Núria Margarit, Graciel·la Rovira, Daniel Gómez-Gras, Cristina Linares","doi":"","DOIUrl":"","url":null,"abstract":"<div >Whether restoration actions achieve full ecological recovery is still debated. This is particularly controversial in the marine realm, where the success of restoration is mostly evaluated in terms of the short-term survival of transplanted organisms. In view of this, we combined population and trait-based approaches to explore the long-term effectiveness of active restoration of a key Mediterranean octocoral. For this purpose, an assemblage with restored <i>Corallium rubrum</i> colonies was monitored over 10 years and compared with a nearby reference site. Our results revealed growth of the transplanted colonies followed by a change in the functional structure (i.e., dominance and diversity of traits) of the restored assemblage. This change was related not only to the development of the coral but also to the arrival and/or increase of species with different traits. Overall, our findings provide an example of how active restoration of long-lived octocorals can be an effective tool for recovering high-diverse coralligenous assemblages at decadal timescales.</div>","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"11 11","pages":""},"PeriodicalIF":11.7,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.science.org/doi/reader/10.1126/sciadv.ado5249","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143602924","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-12DOI: 10.1038/s41598-025-93394-7
Deming Xiong, Chaoqiang Wang
Oil-based drilling cutting residues (OBDCRs) are among the primary solid wastes generated during shale gas exploration and development. Utilizing existing equipment to transform OBDCRs into ceramsites appears to be a feasible and resource-efficient approach. In this study, building ceramsites were prepared with OBDCRs incorporating with fly ash (a byproduct of coal combustion) as raw materials. The aim was to comprehensively and systematically investigate physicochemical properties and characteristics of heavy metals (HMs) in the ceramsites. Research shows that building ceramsites can indeed be prepared using OBDCRs, which exhibit good comprehensive properties and strong resistance to acid/ alkali. The main HMs found in ceramsite are barium (Ba), chromium (Cr), nickel (Ni), lead (Pb), arsenic (As), cadmium (Cd), and mercury (Hg). During the calcination process, these OBDCRs, along with fly ash and foaming agent, underwent mutual melting, resulting in the formation of glass, anorthite and mullite. These newly formed phases effectively encapsulated HMs, resulting in varying degrees of enrichment of HMs such as As, Ba, Pb, Cr, and Ni, except for Cd and Hg. However, the leaching toxicity of these HMs in the ceramsite was significantly lower compared to that of the original OBDCRs. Further analysis revealed a significant increase in the proportion of Fe-Mn Oxides and Organic Matter in HMs such as Cr, Ni, As, Cd, and Pb, while the proportion of Exchangeable and Carbonates forms decreased markedly. This trend clearly demonstrated that the calcination process modified the physical and chemical properties of the ceramsite, and effectively stabilized HMs, i.e., migrated from an active state to a more stable form.
{"title":"Physicochemical properties and heavy metals characteristics of building ceramsites with oil-based drilling cutting residues.","authors":"Deming Xiong, Chaoqiang Wang","doi":"10.1038/s41598-025-93394-7","DOIUrl":"https://doi.org/10.1038/s41598-025-93394-7","url":null,"abstract":"<p><p>Oil-based drilling cutting residues (OBDCRs) are among the primary solid wastes generated during shale gas exploration and development. Utilizing existing equipment to transform OBDCRs into ceramsites appears to be a feasible and resource-efficient approach. In this study, building ceramsites were prepared with OBDCRs incorporating with fly ash (a byproduct of coal combustion) as raw materials. The aim was to comprehensively and systematically investigate physicochemical properties and characteristics of heavy metals (HMs) in the ceramsites. Research shows that building ceramsites can indeed be prepared using OBDCRs, which exhibit good comprehensive properties and strong resistance to acid/ alkali. The main HMs found in ceramsite are barium (Ba), chromium (Cr), nickel (Ni), lead (Pb), arsenic (As), cadmium (Cd), and mercury (Hg). During the calcination process, these OBDCRs, along with fly ash and foaming agent, underwent mutual melting, resulting in the formation of glass, anorthite and mullite. These newly formed phases effectively encapsulated HMs, resulting in varying degrees of enrichment of HMs such as As, Ba, Pb, Cr, and Ni, except for Cd and Hg. However, the leaching toxicity of these HMs in the ceramsite was significantly lower compared to that of the original OBDCRs. Further analysis revealed a significant increase in the proportion of Fe-Mn Oxides and Organic Matter in HMs such as Cr, Ni, As, Cd, and Pb, while the proportion of Exchangeable and Carbonates forms decreased markedly. This trend clearly demonstrated that the calcination process modified the physical and chemical properties of the ceramsite, and effectively stabilized HMs, i.e., migrated from an active state to a more stable form.</p>","PeriodicalId":21811,"journal":{"name":"Scientific Reports","volume":"15 1","pages":"8473"},"PeriodicalIF":3.8,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143605628","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-12DOI: 10.1038/s41598-025-92498-4
Yuksel Akinay, Erkan Karatas, Damla Ruzgar, Ali Akbari, Dilges Baskin, Tayfun Cetin, Hilal Celik Kazici, Mehmet Topuz
Bioactive antimicrobial films play important roles in various fields, such as biodegradable interfaces, tissue regeneration, and biomedical applications where preventing infection, biocompatibility, and immune rejection are important. In the present study, bioactive POSS-doped Ti3C2Tx MXene filled PLA composite film was prepared using the solution casting method for biomedical applications. The contact angle tests were investigated to reveal the usability of the thin films in biomedical applications. The angle decreased from 85.92° degrees in pure PLA thin films to 72.23° on POSS-doped Ti3C2Tx MXene films. The antibacterial performance, cytotoxicity and cell viability assessments of the prepared films have also been thoroughly investigated. Antibacterial tests revealed that the POSS-doped Ti3C2Tx MXene films effectively inhibited the growth of E. coli and S. aureus by 65.93% and 80.63%, respectively, within 4 h. These inhibition rates were observed as 58.32% and 54.97% for E. coli and S. aureus, respectively, after 24 h. Cytotoxicity assessments demonstrated that PMPs consistently showed higher cell viability due to the combination of POSS and Ti3C2Tx MXene. The obtained results suggest that the POSS-doped Ti3C2Tx MXene film is a promising candidate in cases where bacterial inhibition and high biocompatibility are of critical importance.
{"title":"Cytotoxicity and antibacterial activity of polyhedral oligomeric silsesquioxane modified Ti<sub>3</sub>C<sub>2</sub>T<sub>x</sub> MXene films.","authors":"Yuksel Akinay, Erkan Karatas, Damla Ruzgar, Ali Akbari, Dilges Baskin, Tayfun Cetin, Hilal Celik Kazici, Mehmet Topuz","doi":"10.1038/s41598-025-92498-4","DOIUrl":"https://doi.org/10.1038/s41598-025-92498-4","url":null,"abstract":"<p><p>Bioactive antimicrobial films play important roles in various fields, such as biodegradable interfaces, tissue regeneration, and biomedical applications where preventing infection, biocompatibility, and immune rejection are important. In the present study, bioactive POSS-doped Ti<sub>3</sub>C<sub>2</sub>T<sub>x</sub> MXene filled PLA composite film was prepared using the solution casting method for biomedical applications. The contact angle tests were investigated to reveal the usability of the thin films in biomedical applications. The angle decreased from 85.92° degrees in pure PLA thin films to 72.23° on POSS-doped Ti<sub>3</sub>C<sub>2</sub>T<sub>x</sub> MXene films. The antibacterial performance, cytotoxicity and cell viability assessments of the prepared films have also been thoroughly investigated. Antibacterial tests revealed that the POSS-doped Ti<sub>3</sub>C<sub>2</sub>T<sub>x</sub> MXene films effectively inhibited the growth of E. coli and S. aureus by 65.93% and 80.63%, respectively, within 4 h. These inhibition rates were observed as 58.32% and 54.97% for E. coli and S. aureus, respectively, after 24 h. Cytotoxicity assessments demonstrated that PMPs consistently showed higher cell viability due to the combination of POSS and Ti<sub>3</sub>C<sub>2</sub>T<sub>x</sub> MXene. The obtained results suggest that the POSS-doped Ti<sub>3</sub>C<sub>2</sub>T<sub>x</sub> MXene film is a promising candidate in cases where bacterial inhibition and high biocompatibility are of critical importance.</p>","PeriodicalId":21811,"journal":{"name":"Scientific Reports","volume":"15 1","pages":"8463"},"PeriodicalIF":3.8,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143606324","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}