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Microbial dietary preference and interactions affect the export of lipids to the deep ocean 微生物的饮食偏好和相互作用影响向深海输出脂质
IF 44.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-13 DOI: 10.1126/science.aab2661
Lars Behrendt, Uria Alcolombri, Jonathan E. Hunter, Steven Smriga, Tracy Mincer, Daniel P. Lowenstein, Yutaka Yawata, François J. Peaudecerf, Vicente I. Fernandez, Helen F. Fredricks, Henrik Almblad, Joe J. Harrison, Roman Stocker, Benjamin A. S. Van Mooy
Lipids comprise a significant fraction of sinking organic matter in the ocean and play a crucial role in the carbon cycle. Despite this, our understanding of the processes that control lipid degradation is limited. We combined nanolipidomics and imaging to study the bacterial degradation of diverse algal lipid droplets and found that bacteria isolated from marine particles exhibited distinct dietary preferences, ranging from selective to promiscuous degraders. Dietary preference was associated with a distinct set of lipid degradation genes rather than with taxonomic origin. Using synthetic communities composed of isolates with distinct dietary preferences, we showed that lipid degradation is modulated by microbial interactions. A particle export model incorporating these dynamics indicates that metabolic specialization and community dynamics may influence lipid transport efficiency in the ocean’s mesopelagic zone.
脂质占海洋中沉降有机物的很大一部分,在碳循环中起着至关重要的作用。尽管如此,我们对控制脂质降解过程的了解仍然有限。我们结合纳米脂质组学和成像技术研究了细菌降解各种藻类脂滴的过程,发现从海洋颗粒中分离出来的细菌表现出不同的饮食偏好,从选择性降解到杂乱降解不等。饮食偏好与一组不同的脂质降解基因有关,而不是与分类起源有关。利用由具有不同饮食偏好的分离物组成的合成群落,我们发现脂质降解受微生物相互作用的调节。一个包含这些动态变化的微粒输出模型表明,代谢特化和群落动态可能会影响海洋中上层区的脂质运输效率。
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引用次数: 0
Durably reducing conspiracy beliefs through dialogues with AI 通过与人工智能对话持久减少阴谋论信念
IF 44.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-13 DOI: 10.1126/science.adq1814
Thomas H. Costello, Gordon Pennycook, David G. Rand
Conspiracy theory beliefs are notoriously persistent. Influential hypotheses propose that they fulfill important psychological needs, thus resisting counterevidence. Yet previous failures in correcting conspiracy beliefs may be due to counterevidence being insufficiently compelling and tailored. To evaluate this possibility, we leveraged developments in generative artificial intelligence and engaged 2190 conspiracy believers in personalized evidence-based dialogues with GPT-4 Turbo. The intervention reduced conspiracy belief by ~20%. The effect remained 2 months later, generalized across a wide range of conspiracy theories, and occurred even among participants with deeply entrenched beliefs. Although the dialogues focused on a single conspiracy, they nonetheless diminished belief in unrelated conspiracies and shifted conspiracy-related behavioral intentions. These findings suggest that many conspiracy theory believers can revise their views if presented with sufficiently compelling evidence.
阴谋论信念的顽固性是出了名的。有影响力的假说认为它们满足了重要的心理需求,从而抵制了反证。然而,以前在纠正阴谋论信念方面的失败可能是由于反证不够有说服力和针对性。为了评估这种可能性,我们利用生成式人工智能的发展,让 2190 名阴谋论信仰者与 GPT-4 Turbo 进行基于证据的个性化对话。干预使阴谋论信仰减少了约 20%。这种效果在 2 个月后依然存在,并在广泛的阴谋论中得到了推广,甚至在信念根深蒂固的参与者中也出现了这种效果。虽然对话集中在一个阴谋上,但它们还是降低了对不相关阴谋的信念,并改变了与阴谋相关的行为意图。这些研究结果表明,如果有足够令人信服的证据,许多阴谋论信仰者可以修正自己的观点。
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引用次数: 0
Transcripts of repetitive DNA elements signal to block phagocytosis of hematopoietic stem cells 重复 DNA 元素的转录本发出信号,阻止造血干细胞的吞噬作用
IF 44.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-13 DOI: 10.1126/science.adn1629
Cecilia Pessoa Rodrigues, Joseph M. Collins, Song Yang, Catherine Martinez, Ji Wook Kim, Chhiring Lama, Anna S. Nam, Clemens Alt, Charles Lin, Leonard I. Zon
Macrophages maintain hematopoietic stem cell (HSC) quality by assessing cell surface Calreticulin (Calr), an “eat-me” signal induced by reactive oxygen species (ROS). Using zebrafish genetics, we identified Beta-2-microglobulin (B2m) as a crucial “don’t eat-me” signal on blood stem cells. A chemical screen revealed inducers of surface Calr that promoted HSC proliferation without triggering ROS or macrophage clearance. Whole-genome CRISPR-Cas9 screening showed that Toll-like receptor 3 (Tlr3) signaling regulated b2m expression. Targeting b2m or tlr3 reduced the HSC clonality. Elevated B2m levels correlated with high expression of repetitive element (RE) transcripts. Overall, our data suggest that RE-associated double-stranded RNA could interact with TLR3 to stimulate surface expression of B2m on hematopoietic stem and progenitor cells. These findings suggest that the balance of Calr and B2m regulates macrophage-HSC interactions and defines hematopoietic clonality.
巨噬细胞通过评估细胞表面的Calreticulin(Calr)来维持造血干细胞(HSC)的质量,Calr是活性氧(ROS)诱导的 "吃我 "信号。通过斑马鱼遗传学研究,我们发现β-2-微球蛋白(B2m)是造血干细胞上一个重要的 "不吃我 "信号。化学筛选发现,表面Calr的诱导剂能促进造血干细胞增殖,而不会引发ROS或巨噬细胞清除。全基因组CRISPR-Cas9筛选显示,Toll样受体3(Tlr3)信号调节b2m的表达。靶向b2m或Tlr3可降低造血干细胞的克隆性。B2m水平的升高与重复元素(RE)转录本的高表达相关。总之,我们的数据表明,RE相关双链RNA可与TLR3相互作用,刺激造血干细胞和祖细胞表面B2m的表达。这些发现表明,Calr和B2m的平衡调节着巨噬细胞-造血干细胞的相互作用,并决定着造血克隆性。
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引用次数: 0
Autoregulated splicing of TRA2β programs T cell fate in response to antigen-receptor stimulation TRA2β 的自动调节剪接可在抗原受体刺激下对 T 细胞的命运进行调控
IF 44.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-13 DOI: 10.1126/science.adj1979
Timofey A. Karginov, Antoine Ménoret, Nathan K. Leclair, Andrew G. Harrison, Karthik Chandiran, Jenny E. Suarez-Ramirez, Marina Yurieva, Keaton Karlinsey, Penghua Wang, Rachel J. O’Neill, Patrick A. Murphy, Adam J. Adler, Linda S. Cauley, Olga Anczuków, Beiyan Zhou, Anthony T. Vella
T cell receptor (TCR) sensitivity to peptide–major histocompatibility complex (MHC) dictates T cell fate. Canonical models of TCR sensitivity cannot be fully explained by transcriptional regulation. In this work, we identify a posttranscriptional regulatory mechanism of TCR sensitivity that guides alternative splicing of TCR signaling transcripts through an evolutionarily ultraconserved poison exon (PE) in the RNA-binding protein (RBP) TRA2β in mouse and human. TRA2β-PE splicing, seen during cancer and infection, was required for TCR-induced effector T cell expansion and function. Tra2β-PE skipping enhanced T cell response to antigen by increasing TCR sensitivity. As antigen levels decreased, Tra2β-PE reinclusion allowed T cell survival. Finally, we found that TRA2β-PE was first included in the genome of jawed vertebrates that were capable of TCR gene rearrangements. We propose that TRA2β-PE splicing acts as a gatekeeper of TCR sensitivity to shape T cell fate.
T细胞受体(TCR)对多肽-主要组织相容性复合体(MHC)的敏感性决定了T细胞的命运。TCR敏感性的经典模型不能完全用转录调控来解释。在这项研究中,我们发现了一种 TCR 敏感性的转录后调控机制,该机制通过小鼠和人类 RNA 结合蛋白(RBP)TRA2β 中一个进化超保守的毒外显子(PE)引导 TCR 信号转录本的替代剪接。在癌症和感染期间出现的 TRA2β-PE 剪接是 TCR 诱导的效应 T 细胞扩增和功能所必需的。跳过TRA2β-PE可提高TCR的敏感性,从而增强T细胞对抗原的反应。随着抗原水平的降低,Tra2β-PE 的重新整合使 T 细胞得以存活。最后,我们发现 TRA2β-PE 首次出现在有颌脊椎动物的基因组中,这些脊椎动物能够进行 TCR 基因重排。我们认为,TRA2β-PE的剪接是TCR敏感性的看门人,决定着T细胞的命运。
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引用次数: 0
Exploiting the mechanical effects of ultrasound for noninvasive therapy 利用超声波的机械效应进行无创治疗
IF 44.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-13 DOI: 10.1126/science.adp7206
Meaghan A. O’Reilly
Focused ultrasound is a platform technology capable of eliciting a wide range of biological responses with high spatial precision deep within the body. Although focused ultrasound is already in clinical use for focal thermal ablation of tissue, there has been a recent growth in development and translation of ultrasound-mediated nonthermal therapies. These approaches exploit the physical forces of ultrasound to produce a range of biological responses dependent on exposure conditions. This review discusses recent advances in four application areas that have seen particular growth and have immense clinical potential: brain drug delivery, neuromodulation, focal tissue destruction, and endogenous immune system activation. Owing to the maturation of transcranial ultrasound technology, the brain is a major target organ; however, clinical indications outside the brain are also discussed.
聚焦超声是一种平台技术,能够在人体深部以高空间精度激发多种生物反应。虽然聚焦超声已在临床上用于组织的局灶性热消融,但最近超声介导的非热疗法的开发和转化也在不断增长。这些方法利用超声波的物理力量产生一系列取决于暴露条件的生物反应。本综述将讨论在四个应用领域的最新进展,这四个领域的发展尤为迅速,并具有巨大的临床潜力:脑药物输送、神经调节、病灶组织破坏和内源性免疫系统激活。由于经颅超声技术的成熟,脑部是主要的目标器官;不过,本文也讨论了脑部以外的临床适应症。
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引用次数: 0
Inherent symmetry and flexibility in hepatitis B virus subviral particles 乙型肝炎病毒亚病毒粒子固有的对称性和灵活性
IF 44.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-12 DOI: 10.1126/science.adp1453
Quan Wang, Tao Wang, Lin Cao, An Mu, Sheng Fu, Peipei Wang, Yan Gao, Wenxin Ji, Zhenyu Liu, Zhanqiang Du, Luke W. Guddat, Wenchi Zhang, Shuang Li, Xuemei Li, Zhiyong Lou, Xiangxi Wang, Zhongyu Hu, Zihe Rao
Chronic hepatitis B virus (HBV) infection poses a major global health challenge with massive morbidity and mortality. Despite a preventive vaccine, current treatments provide limited virus clearance, necessitating lifelong commitment. The HBV surface antigen (HBsAg) is crucial for diagnosis and prognosis, yet its high-resolution structure and assembly on the virus envelope remain elusive. Utilizing extensive datasets and advanced cryo–electron microscopy analysis, we present structural insights into HBsAg at a near-atomic resolution of 3.7 angstroms. HBsAg homodimers assemble into subviral particles with D2- and D4-like quasisymmetry, elucidating the dense-packing rules and structural adaptability of HBsAg. These findings provide insights into how HBsAg assembles into higher-order filaments and interacts with the capsid to form virions.
慢性乙型肝炎病毒(HBV)感染是全球健康面临的一大挑战,发病率和死亡率都很高。尽管有预防性疫苗,但目前的治疗方法只能有限地清除病毒,因此需要终生治疗。HBV 表面抗原(HBsAg)是诊断和预后的关键,但其高分辨率结构和在病毒包膜上的组装仍然难以捉摸。利用广泛的数据集和先进的冷冻电镜分析,我们以 3.7 埃的近原子分辨率揭示了 HBsAg 的结构。HBsAg 同源二聚体组装成具有 D2 和 D4 类准对称性的亚病毒颗粒,阐明了 HBsAg 的致密堆积规则和结构适应性。这些发现让人们深入了解了HBsAg如何组装成高阶丝状物并与囊膜相互作用形成病毒。
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引用次数: 0
Biogenic secondary organic aerosol participates in plant interactions and herbivory defense 生物次生有机气溶胶参与植物相互作用和食草动物防御
IF 44.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-12 DOI: 10.1126/science.ado6779
Hao Yu, Angela Buchholz, Iida Pullinen, Silja Saarela, Zijun Li, Annele Virtanen, James D. Blande
Biogenic secondary organic aerosols (SOAs) can be formed from the oxidation of plant volatiles in the atmosphere. Herbivore-induced plant volatiles (HIPVs) can elicit plant defenses, but whether such ecological functions persist after they form SOAs was previously unknown. Here we show that Scots pine seedlings damaged by large pine weevils feeding on their roots release HIPVs that trigger defenses in neighboring conspecific plants. The biological activity persisted after HIPVs had been oxidized to form SOAs, which was indicated by receivers displaying enhanced photosynthesis, primed volatile defenses, and reduced weevil damage. The elemental composition and quantity of SOAs likely determines their biological functions. This work demonstrates that plant-derived SOAs can mediate interactions between plants, highlighting their ecological significance in ecosystems.
大气中的植物挥发物氧化后可形成生物次生有机气溶胶(SOAs)。食草动物诱导的植物挥发物(HIPVs)可以激发植物防御功能,但这种生态功能在形成 SOAs 后是否会持续,以前还不得而知。在这里,我们发现被大型松象鼻虫取食根部的苏格兰松树幼苗会释放出 HIPVs,从而引发邻近同种植物的防御。在 HIPVs 被氧化形成 SOAs 之后,这种生物活性仍然存在,这表现在受体显示出光合作用增强、挥发性防御能力增强以及象鼻虫危害减轻。SOAs 的元素组成和数量可能决定了其生物功能。这项研究表明,植物产生的 SOAs 可以介导植物之间的相互作用,突出了它们在生态系统中的生态意义。
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引用次数: 0
Strong El Niños primed Earth for mass extinction. 强烈的厄尔尼诺现象为地球大灭绝埋下了伏笔。
IF 56.9 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-12 DOI: 10.1126/science.adt0785
Paul Voosen
Extreme weather sparked by ocean shifts set stage for Great Dying 250 million years ago.
海洋变化引发的极端天气为 2.5 亿年前的大灭绝埋下了伏笔。
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引用次数: 0
Managing emissions with smart city technology 利用智慧城市技术管理排放
IF 44.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-12 DOI: 10.1126/science.adr0001
Danfeng He, Xiaolin Zhang, Fujiang Zhou
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引用次数: 0
Characterization of a Lewis adduct in its inner and outer forms 路易斯加合物内外两种形态的特征
IF 44.7 1区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES Pub Date : 2024-09-12 DOI: 10.1126/science.adp7465
Wei-Chun Liu, François P. Gabbaï
The entrance channel of bimolecular reactions sometimes involves the formation of outer complexes as weakly bound, fleeting intermediates. Here, we characterize such an outer complex in a system that models the bimolecular, C-O bond–forming reaction of a phosphine oxide Lewis base with a carbenium Lewis acid. Crystallographic studies show that the C-O distance in the outer form exceeds that of the final or inner adduct by 1.1 angstroms. As the system samples the two forms of the complex, which correspond to minima on the corresponding potential energy surface, the C-O linkage switches from a secondary interaction in the outer complex to a dative bond in the inner complex. This phenomenon is harnessed as a functional feature to stabilize xanthylium-based photoredox catalysts.
双分子反应的入口通道有时会形成作为弱结合、短暂中间产物的外络合物。在这里,我们以氧化膦路易斯碱与羰基路易斯酸的双分子 C-O 键形成反应为模型,描述了这种外络合物的特征。晶体学研究表明,外层形式的 C-O 距离比最终或内层加合物的 C-O 距离超出 1.1 埃。当系统对复合物的两种形式(对应于相应势能面上的最小值)进行取样时,C-O 连接会从外层复合物中的次生相互作用转变为内层复合物中的配位键。这种现象被作为一种功能特征加以利用,以稳定基于黄原酸盐的光氧化催化剂。
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引用次数: 0
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