Heterocyclic triazines and their derivatives have excellent biological activity and have been used as herbicides and anticancer drugs. A large number of derivatives were synthesized and their biological activity was investigated. Some bacteria synthesize the triazine derivatives such as Nostocine A, Toxoflavin, and Fluviol from GTP using enzymes similar to those in the synthesis pathway of Riboflavin (vitamin B2). These triazine derivatives show antibiotic activity. In particular, research on Toxoflavin has progressed as a toxin produced by bacteria that cause seedling rot and rice grain blight in rice. It has recently been revealed that Fluviol, which is produced by bacteria, acts to suppress the growth of pathogenic bacteria. This review will focus on triazine derivatives produced by bacteria.
{"title":"[Production and biological activity of the triazine derivatives: focusing on antibiotics produced by bacteria].","authors":"Hajime Nakatani, Michio Homma","doi":"10.3412/jsb.80.1","DOIUrl":"https://doi.org/10.3412/jsb.80.1","url":null,"abstract":"<p><p>Heterocyclic triazines and their derivatives have excellent biological activity and have been used as herbicides and anticancer drugs. A large number of derivatives were synthesized and their biological activity was investigated. Some bacteria synthesize the triazine derivatives such as Nostocine A, Toxoflavin, and Fluviol from GTP using enzymes similar to those in the synthesis pathway of Riboflavin (vitamin B2). These triazine derivatives show antibiotic activity. In particular, research on Toxoflavin has progressed as a toxin produced by bacteria that cause seedling rot and rice grain blight in rice. It has recently been revealed that Fluviol, which is produced by bacteria, acts to suppress the growth of pathogenic bacteria. This review will focus on triazine derivatives produced by bacteria.</p>","PeriodicalId":101339,"journal":{"name":"Nihon saikingaku zasshi. Japanese journal of bacteriology","volume":"80 1","pages":"1-13"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143569310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Proteins in the cells are born (synthesized), work, and die (decomposed). In the life of a protein, its birth is obviously important, but how it dies is equally important in living organisms. Proteases secreted into the outside of cells are used to decompose the external proteins and the degradation products are taken as the nutrients. On the other hand, there are also proteases that decompose unnecessary or harmful proteins which are generated in the cells. In eukaryotes, a large enzyme complex called the proteasome is primarily responsible for degradation of such proteins. Bacteria, which are prokaryotes, have a similar system as the proteasome. We would like to explain the bacterial degradation system of proteins or the death of proteins, which is performed by ATP-dependent protease Clp, with a particular focus on the ClpXP complex, and with an aspect as a target for antibiotics against bacteria.
蛋白质在细胞中诞生(合成)、工作和死亡(分解)。在蛋白质的一生中,它的诞生显然很重要,但在生物体内,它如何死亡同样重要。分泌到细胞外的蛋白酶用于分解外部的蛋白质,而降解产物则被当作营养物质。另一方面,也有一些蛋白酶用于分解细胞内产生的不必要或有害的蛋白质。在真核生物中,一种叫做蛋白酶体的大型酶复合物主要负责降解这类蛋白质。属于原核生物的细菌也有一个与蛋白酶体类似的系统。我们想解释一下细菌的蛋白质降解系统或蛋白质死亡系统,它是由依赖 ATP 的蛋白酶 Clp 执行的,尤其侧重于 ClpXP 复合物,并将其作为抗生素对付细菌的一个目标。
{"title":"[Protein degradation in bacteria: focus on the ClpP protease].","authors":"Fumihiro Ishikawa, Michio Homma, Genzoh Tanabe, Takayuki Uchihashi","doi":"10.3412/jsb.79.1","DOIUrl":"https://doi.org/10.3412/jsb.79.1","url":null,"abstract":"<p><p>Proteins in the cells are born (synthesized), work, and die (decomposed). In the life of a protein, its birth is obviously important, but how it dies is equally important in living organisms. Proteases secreted into the outside of cells are used to decompose the external proteins and the degradation products are taken as the nutrients. On the other hand, there are also proteases that decompose unnecessary or harmful proteins which are generated in the cells. In eukaryotes, a large enzyme complex called the proteasome is primarily responsible for degradation of such proteins. Bacteria, which are prokaryotes, have a similar system as the proteasome. We would like to explain the bacterial degradation system of proteins or the death of proteins, which is performed by ATP-dependent protease Clp, with a particular focus on the ClpXP complex, and with an aspect as a target for antibiotics against bacteria.</p>","PeriodicalId":101339,"journal":{"name":"Nihon saikingaku zasshi. Japanese journal of bacteriology","volume":"79 1","pages":"1-13"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139935004","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Enterohemorrhagic Escherichia coli (EHEC) is an important pathogen since more than 3,000 cases have been reported annually in Japan. With the advent of next-generation sequencing, it has become feasible to analyze numerous strains using whole-genome sequence (WGS) analysis, making its application to surveillance a realistic possibility. In this paper, we introduce the following research outcomes achieved by our group utilizing WGS analysis of EHEC: 1) development of a WGS analysis pipeline to enhance the accuracy of the surveillance, 2) investigation of the dynamics of mobile elements such as plasmids and phages, and 3) analysis of the phylogeny and pathogenicity of newly identified highly pathogenic EHEC strains.
{"title":"[Population genetics of enterohemorrhagic Escherichia coli using whole-genome sequencing analyses].","authors":"Ken-Ichi Lee","doi":"10.3412/jsb.79.283","DOIUrl":"10.3412/jsb.79.283","url":null,"abstract":"<p><p>Enterohemorrhagic Escherichia coli (EHEC) is an important pathogen since more than 3,000 cases have been reported annually in Japan. With the advent of next-generation sequencing, it has become feasible to analyze numerous strains using whole-genome sequence (WGS) analysis, making its application to surveillance a realistic possibility. In this paper, we introduce the following research outcomes achieved by our group utilizing WGS analysis of EHEC: 1) development of a WGS analysis pipeline to enhance the accuracy of the surveillance, 2) investigation of the dynamics of mobile elements such as plasmids and phages, and 3) analysis of the phylogeny and pathogenicity of newly identified highly pathogenic EHEC strains.</p>","PeriodicalId":101339,"journal":{"name":"Nihon saikingaku zasshi. Japanese journal of bacteriology","volume":"79 4","pages":"283-289"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142782274","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
To combat drug-resistant bacteria, it is essential to develop new antimicrobial agents with novel mechanisms of action that demonstrate therapeutic efficacy. Lysocin E, discovered by our group, is a novel antibiotic with a unique mechanism of action that targets menaquinone. Compared to other antibiotics, lysocin E exhibits extremely potent bactericidal activity in a very short time. In addition, unlike other antibiotics, the antimicrobial activity of lysocin E is enhanced by adding serum, which triggers a distinct adjuvant effect of host factors, thereby demonstrating its exceptional therapeutic efficacy. It has been suggested that lysocin E is effective against intractable Staphylococcus aureus infections, and pre-clinical studies are ongoing. Lysocin E has the potential to become a next-generation therapeutic agent that is distinct from conventional antibacterial drugs.
为了对付耐药性细菌,必须开发具有新作用机制并能证明疗效的新型抗菌剂。我们研究小组发现的溶菌酶 E 是一种新型抗生素,其独特的作用机制是针对甲萘醌。与其他抗生素相比,溶菌酶 E 能在极短的时间内显示出极强的杀菌活性。此外,与其他抗生素不同的是,加入血清后,溶菌酶 E 的抗菌活性会增强,从而引发宿主因子的独特辅助作用,从而显示出其卓越的疗效。有研究表明,溶菌酶 E 对难治性金黄色葡萄球菌感染有效,目前正在进行临床前研究。溶菌酶 E 有可能成为有别于传统抗菌药物的新一代治疗药物。
{"title":"[Development of next-generation antimicrobials with unique mechanisms of action].","authors":"Hiroshi Hamamoto","doi":"10.3412/jsb.79.275","DOIUrl":"https://doi.org/10.3412/jsb.79.275","url":null,"abstract":"<p><p>To combat drug-resistant bacteria, it is essential to develop new antimicrobial agents with novel mechanisms of action that demonstrate therapeutic efficacy. Lysocin E, discovered by our group, is a novel antibiotic with a unique mechanism of action that targets menaquinone. Compared to other antibiotics, lysocin E exhibits extremely potent bactericidal activity in a very short time. In addition, unlike other antibiotics, the antimicrobial activity of lysocin E is enhanced by adding serum, which triggers a distinct adjuvant effect of host factors, thereby demonstrating its exceptional therapeutic efficacy. It has been suggested that lysocin E is effective against intractable Staphylococcus aureus infections, and pre-clinical studies are ongoing. Lysocin E has the potential to become a next-generation therapeutic agent that is distinct from conventional antibacterial drugs.</p>","PeriodicalId":101339,"journal":{"name":"Nihon saikingaku zasshi. Japanese journal of bacteriology","volume":"79 3","pages":"275-281"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142684071","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rhodococcus equi is a facultative intracellular gram-positive coccobacillus which is a well-known cause of foal pneumonia and/or enteritis in equine veterinary medicine. More than 300 cases of R. equi infection have been reported since the first description of human disease in 1968. Most patients who become infected with R equi are immunocompromised, such as those infected with human immunodeficiency virus (HIV), recipients of organ transplantation, and patients receiving cancer treatment. However, there are increasing reports of the immunocompetent hosts. The pathogenicity of R. equi has been attributed to the presence of plasmid-encoded virulence-associated proteins (Vap). To date, three host-associated virulence plasmid types of R. equi have been identified as follows: the circular pVAPA and pVAPB, related, respectively, to equine and porcine isolates in 1991 and 1995, and a recently described linear pVAPN plasmid associated with bovine and caprine strains in 2015. More recently, these three plasmid types have been re-found in the human isolates which were isolated during 1980s to 1990s. Not only horses, but also pigs, goats, cattle and their environment should be considered as a potential source of R. equi for humans. In this review, we shed light on the current understanding of R. equi as an emerging zoonotic pathogen.
{"title":"[Rhodococcus equi infections in humans: an emerging zoonotic pathogen].","authors":"Shinji Takai, Yasutaka Mizuno, Yasunori Suzuki, Yukako Sasaki, Tsutomu Kakuda, Teruo Kirikae","doi":"10.3412/jsb.79.15","DOIUrl":"https://doi.org/10.3412/jsb.79.15","url":null,"abstract":"<p><p>Rhodococcus equi is a facultative intracellular gram-positive coccobacillus which is a well-known cause of foal pneumonia and/or enteritis in equine veterinary medicine. More than 300 cases of R. equi infection have been reported since the first description of human disease in 1968. Most patients who become infected with R equi are immunocompromised, such as those infected with human immunodeficiency virus (HIV), recipients of organ transplantation, and patients receiving cancer treatment. However, there are increasing reports of the immunocompetent hosts. The pathogenicity of R. equi has been attributed to the presence of plasmid-encoded virulence-associated proteins (Vap). To date, three host-associated virulence plasmid types of R. equi have been identified as follows: the circular pVAPA and pVAPB, related, respectively, to equine and porcine isolates in 1991 and 1995, and a recently described linear pVAPN plasmid associated with bovine and caprine strains in 2015. More recently, these three plasmid types have been re-found in the human isolates which were isolated during 1980s to 1990s. Not only horses, but also pigs, goats, cattle and their environment should be considered as a potential source of R. equi for humans. In this review, we shed light on the current understanding of R. equi as an emerging zoonotic pathogen.</p>","PeriodicalId":101339,"journal":{"name":"Nihon saikingaku zasshi. Japanese journal of bacteriology","volume":"79 1","pages":"15-24"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139935029","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Horizontal gene transfer through transconjugation and natural transformation plays a major role in the spread of antimicrobial resistance. Although the phenomenon of genetic element transmission has long been known, the rapid increase in the number of antimicrobial resistant bacteria in recent years and the accompanying accumulation of genomic information have revealed that horizontal gene transfer contributes to genome plasticity in various ways. The author reported the molecular mechanism of the antimicrobial activity of the accessory factor bacteriocin encoded by the junctional transfer plasmid of Enterococcus faecalis, a representative Gram-positive opportunistic pathogen that is concerned as highly antimicrobial resistant, and found diversity in the selfimmune system based on epidemiological studies. In addition, the author established a technique to visualize and quantify genomic recombination by natural transformation in Streptococcus pneumoniae which is also one of the most concerns for antimicrobial resistance and vaccine escape, at single cells level resolution in real time. Focuses on outcome from these research, this paper introduces the molecular mechanisms that promote horizontal gene transmission and the prospects for their technological application.
{"title":"[Mechanism of high-frequent horizontal gene transfer in Gram positive bacterial pathogens].","authors":"Jun Kurushima","doi":"10.3412/jsb.78.179","DOIUrl":"10.3412/jsb.78.179","url":null,"abstract":"<p><p>Horizontal gene transfer through transconjugation and natural transformation plays a major role in the spread of antimicrobial resistance. Although the phenomenon of genetic element transmission has long been known, the rapid increase in the number of antimicrobial resistant bacteria in recent years and the accompanying accumulation of genomic information have revealed that horizontal gene transfer contributes to genome plasticity in various ways. The author reported the molecular mechanism of the antimicrobial activity of the accessory factor bacteriocin encoded by the junctional transfer plasmid of Enterococcus faecalis, a representative Gram-positive opportunistic pathogen that is concerned as highly antimicrobial resistant, and found diversity in the selfimmune system based on epidemiological studies. In addition, the author established a technique to visualize and quantify genomic recombination by natural transformation in Streptococcus pneumoniae which is also one of the most concerns for antimicrobial resistance and vaccine escape, at single cells level resolution in real time. Focuses on outcome from these research, this paper introduces the molecular mechanisms that promote horizontal gene transmission and the prospects for their technological application.</p>","PeriodicalId":101339,"journal":{"name":"Nihon saikingaku zasshi. Japanese journal of bacteriology","volume":"78 4","pages":"179-187"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139033151","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Urinary tract infections (UTIs) are one of the most common infections. Uropathogenic Escherichia coli (UPEC) is the most common causative organism. Once UPEC enters the urinary tract, it infects the bladder and then ascends the urinary tract to the kidneys, where it causes pyelonephritis, a more severe form of the disease. While various virulence factors, including adhesions and cytotoxic factors to bladder epithelial cells, have been identified and their functions have been analyzed, the question remains, "How can UPEC, which is harmless in the intestinal tract, be induced to become pathogenic in the urinary tract?" and "How does UPEC ascend the urinary tract and infect the kidneys?" On the other hand, UPEC invades host cells and forms biofilm-like microcolonies that are resistant to various antimicrobial agents. We are working to solve this problem by identifying the factors responsible for the virulence of UPEC and the establishment of infection of the kidney, as well as the factors involved in microcolony formation and elucidating their functions. Here I outline the virulence expression of UPEC from bladder to kidney infection and the mechanism of UTI refractoriness, focusing on our studies.
{"title":"[Research on mechanisms of drug resistance and virulence expression in pathogenic Escherichia coli].","authors":"Hidetada Hirakawa","doi":"10.3412/jsb.78.167","DOIUrl":"10.3412/jsb.78.167","url":null,"abstract":"<p><p>Urinary tract infections (UTIs) are one of the most common infections. Uropathogenic Escherichia coli (UPEC) is the most common causative organism. Once UPEC enters the urinary tract, it infects the bladder and then ascends the urinary tract to the kidneys, where it causes pyelonephritis, a more severe form of the disease. While various virulence factors, including adhesions and cytotoxic factors to bladder epithelial cells, have been identified and their functions have been analyzed, the question remains, \"How can UPEC, which is harmless in the intestinal tract, be induced to become pathogenic in the urinary tract?\" and \"How does UPEC ascend the urinary tract and infect the kidneys?\" On the other hand, UPEC invades host cells and forms biofilm-like microcolonies that are resistant to various antimicrobial agents. We are working to solve this problem by identifying the factors responsible for the virulence of UPEC and the establishment of infection of the kidney, as well as the factors involved in microcolony formation and elucidating their functions. Here I outline the virulence expression of UPEC from bladder to kidney infection and the mechanism of UTI refractoriness, focusing on our studies.</p>","PeriodicalId":101339,"journal":{"name":"Nihon saikingaku zasshi. Japanese journal of bacteriology","volume":"78 3","pages":"167-177"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"50164299","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}