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Opposing activities of oncogenic MIR17HG and tumor suppressive MIR100HG clusters and their gene targets regulate replicative senescence in human adult stem cells. 致癌MIR17HG和抑瘤MIR100HG簇及其基因靶点的相反活性调控人成体干细胞的复制性衰老。
IF 5 Q1 Medicine Pub Date : 2017-04-20 eCollection Date: 2017-01-01 DOI: 10.1038/s41514-017-0006-y
Mary F Lopez, Ping Niu, Lu Wang, Maryann Vogelsang, Meenakshi Gaur, Bryan Krastins, Yueqiang Zhao, Aibek Smagul, Aliya Nussupbekova, Aikan A Akanov, I King Jordan, Victoria V Lunyak

Growing evidence suggests that many diseases of aging, including diseases associated with robust changes and adipose deports, may be caused by resident adult stem cell exhaustion due to the process called cellular senescence. Understanding how microRNA pathways can regulate cellular senescence is crucial for the development of novel diagnostic and therapeutic strategies to combat these pathologies. Herein, using integrated transcriptomic and semi-quantitative proteomic analysis, we provide a system level view of the regulation of human adipose-derived stem cell senescence by a subset of mature microRNAs (termed senescence-associated-microRNAs) produced by biogenesis of oncogenic MIR17HG and tumor-suppressive MIR100HG clusters. We demonstrate functional significance of these mature senescence-associated-microRNAs in the process of replicative senescence of human adipose-derived stem cells ex-vivo and define a set of senescence-associated-microRNA gene targets that are able to elicit, modulate and, most importantly, balance intimate connections between oncogenic and senescent events.

越来越多的证据表明,许多与衰老有关的疾病,包括与剧烈变化和脂肪消耗相关的疾病,可能是由驻留的成体干细胞在称为细胞衰老的过程中衰竭引起的。了解microRNA通路如何调节细胞衰老对于开发新的诊断和治疗策略来对抗这些病理至关重要。本文中,通过整合转录组学和半定量蛋白质组学分析,我们提供了一个系统水平的观点,即由致癌MIR17HG和肿瘤抑制MIR100HG集群生物发生产生的一组成熟microrna(称为衰老相关microrna)对人类脂肪来源的干细胞衰老的调控。我们证明了这些成熟的衰老相关microrna在人脂肪干细胞离体复制衰老过程中的功能意义,并定义了一组衰老相关microrna基因靶点,这些靶点能够引发、调节,最重要的是,平衡致癌和衰老事件之间的密切联系。
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引用次数: 18
An alanine expanded PABPN1 causes increased utilization of intronic polyadenylation sites. 丙氨酸扩增的PABPN1导致内含子聚腺苷化位点的利用增加。
IF 5 Q1 Medicine Pub Date : 2017-04-07 eCollection Date: 2017-01-01 DOI: 10.1038/s41514-017-0007-x
Tooba Abbassi-Daloii, Soheil Yousefi, Eleonora de Klerk, Laurens Grossouw, Muhammad Riaz, Peter A C 't Hoen, Vered Raz

In eukaryote genomes, the polyadenylation site marks termination of mature RNA transcripts by a poly-adenine tail. The polyadenylation site is recognized by a dynamic protein complex, among which the poly-adenine-binding protein nuclear1 plays a key role. Reduced poly-adenine-binding protein nuclear1 levels are found in aged muscles and are even lower in oculopharyngeal muscular dystrophy patients. Oculopharyngeal muscular dystrophy is a rare, late onset autosomal dominant myopathy, and is caused by an alanine expansion mutation in poly-adenine-binding protein nuclear1. Mutant poly-adenine-binding protein nuclear1 forms insoluble nuclear aggregates leading to depletion of functional poly-adenine-binding protein nuclear1 levels. In oculopharyngeal muscular dystrophy models, increased utilization of proximal polyadenylation sites has been observed in tandem 3'-untranslated regions, and most often cause gene upregulation. However, global alterations in expression profiles canonly partly be explained by polyadenylation site switches within the most distal 3'-untranslated region. Most poly-adenine signals are found at the distal 3'-untranslated region, but a significant part is also found in internal gene regions, like introns, exons, and internal 3'-untranslated regions. Here, we investigated poly-adenine-binding protein nuclear1's role in polyadenylation site utilization in internal gene regions. In the quadriceps muscle of oculopharyngeal muscular dystrophy mice expressing expPABPN1 we found significant polyadenylation site switches between gene regions in 17% of genes with polyadenylation site in multiple regions (N = 574; 5% False Discovery Rate). Polyadenylation site switches between gene regions were associated with differences in transcript expression levels and alterations in open reading frames. Transcripts ending at internal polyadenylation site were confirmed in tibialis anterior muscles from the same mice and in mouse muscle cell cultures overexpressing expPABPN1. The polyadenylation site switches were associated with nuclear accumulation of full-length transcripts. Our results provide further insights into the diverse roles of poly-adenine-binding protein nuclear1 in the post-transcriptional control of muscle gene expression and its relevance for oculopharyngeal muscular dystrophy pathology and muscle aging.

在真核生物基因组中,聚腺苷化位点标志着成熟RNA转录物通过聚腺嘌呤尾部终止。聚腺苷化位点由一个动态蛋白复合物识别,其中聚腺苷结合蛋白nucle1起着关键作用。在老年肌肉中发现多腺嘌呤结合蛋白核1水平降低,在眼咽肌营养不良患者中甚至更低。眼咽肌营养不良症是一种罕见的晚发常染色体显性肌病,由多腺嘌呤结合蛋白nucle1的丙氨酸扩增突变引起。突变型多腺嘌呤结合蛋白核1形成不溶性核聚集体,导致功能性多腺嘌呤结合蛋白核1水平的耗竭。在眼咽肌营养不良模型中,在串联3'-非翻译区观察到近端聚腺苷化位点的利用增加,并且最常导致基因上调。然而,表达谱的全局改变只能部分解释为最远端3'-未翻译区域的聚腺苷化位点开关。大多数多腺嘌呤信号存在于远端3′-非翻译区,但也有相当一部分存在于基因内部区域,如内含子、外显子和内部3′-非翻译区。在这里,我们研究了聚腺嘌呤结合蛋白核1在基因内部区域聚腺苷化位点利用中的作用。在表达expPABPN1的眼咽肌萎缩症小鼠的股四头肌中,我们发现17%的多聚腺苷化位点在多个区域的基因区域之间有显著的多聚腺苷化位点切换(N = 574;5%的错误发现率)。基因区域之间的聚腺苷化位点切换与转录物表达水平的差异和开放阅读框的改变有关。在来自同一小鼠的胫骨前肌和过表达expPABPN1的小鼠肌肉细胞培养中证实了以内部聚腺苷化位点结束的转录本。聚腺苷化位点开关与全长转录本的核积累有关。我们的研究结果进一步揭示了多腺嘌呤结合蛋白nucle1在肌肉基因表达转录后调控中的多种作用及其与眼咽肌营养不良病理和肌肉衰老的相关性。
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引用次数: 15
Ubiquitous overexpression of the DNA repair factor dPrp19 reduces DNA damage and extends Drosophila life span. DNA修复因子dpr19的普遍过表达可减少DNA损伤并延长果蝇的寿命。
IF 5 Q1 Medicine Pub Date : 2017-03-15 eCollection Date: 2017-01-01 DOI: 10.1038/s41514-017-0005-z
Kathrin Garschall, Hanna Dellago, Martina Gáliková, Markus Schosserer, Thomas Flatt, Johannes Grillari

Mechanisms that ensure and maintain the stability of genetic information are fundamentally important for organismal function and can have a large impact on disease, aging, and life span. While a multi-layered cellular apparatus exists to detect and respond to DNA damage, various insults from environmental and endogenous sources continuously affect DNA integrity. Over time this can lead to the accumulation of somatic mutations, which is thought to be one of the major causes of aging. We have previously found that overexpression of the essential human DNA repair and splicing factor SNEV, also called PRP19 or hPso4, extends replicative life span of cultured human endothelial cells and impedes accumulation of DNA damage. Here, we show that adult-specific overexpression of dPrp19, the D. melanogaster ortholog of human SNEV/PRP19/hPso4, robustly extends life span in female fruit flies. This increase in life span is accompanied by reduced levels of DNA damage and improved resistance to oxidative and genotoxic stress. Our findings suggest that dPrp19 plays an evolutionarily conserved role in aging, life span modulation and stress resistance, and support the notion that superior DNA maintenance is key to longevity.

确保和维持遗传信息稳定性的机制对机体功能至关重要,并可能对疾病、衰老和寿命产生重大影响。虽然存在多层细胞装置来检测和响应DNA损伤,但来自环境和内源的各种损伤不断影响DNA的完整性。随着时间的推移,这可能导致体细胞突变的积累,这被认为是衰老的主要原因之一。我们之前已经发现,过表达必要的人DNA修复和剪接因子SNEV,也称为PRP19或hPso4,可以延长培养的人内皮细胞的复制寿命,并阻碍DNA损伤的积累。本研究表明,雌性果蝇成虫特异性过表达dpr19(与人类SNEV/PRP19/hPso4同源的黑腹D.果蝇)可以显著延长雌性果蝇的寿命。这种寿命的增加伴随着DNA损伤水平的降低以及对氧化和基因毒性应激的抵抗力的提高。我们的研究结果表明,dpr19在衰老、寿命调节和抗逆性中起着进化保守的作用,并支持了良好的DNA维护是长寿的关键的观点。
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引用次数: 18
Both overlapping and independent mechanisms determine how diet and insulin-ligand knockouts extend lifespan of Drosophila melanogaster. 重叠和独立的机制决定了饮食和胰岛素配体敲除如何延长黑腹果蝇的寿命。
IF 5 Q1 Medicine Pub Date : 2017-02-20 eCollection Date: 2017-01-01 DOI: 10.1038/s41514-017-0004-0
Jelle Zandveld, Joost van den Heuvel, Bastiaan J Zwaan, Matthew D W Piper

Lifespan in many organisms, including Drosophila melanogaster, can be increased by reduced insulin-IGF-like signaling (IIS) or by changes in diet. Most studies testing whether IIS is involved in diet-mediated lifespan extension employ only a few diets, but recent data shows that a broad range of nutritional environments is required. Here, we present lifespan data of long-lived Drosophila, lacking three of the eight insulin-like peptides [Drosophila insulin-like peptides 2,3,5 (dilp2-3,5)] on nine different diets that surround the optimum for lifespan. Their nutritional content was varied by manipulating sugar and yeast concentrations independently, and thus incorporated changes in both diet restriction and nutrient balance. The mutants were substantially longer-lived than controls on every diet, but the effects on the lifespan response to sugar and yeast differed. Our data illustrates how a greater coverage of diet balance (DB) and restriction can unify differing interpretations of how IIS might be involved in the response of lifespan to diet.

许多生物,包括黑腹果蝇,可以通过减少胰岛素- igf样信号(IIS)或改变饮食来延长寿命。大多数测试IIS是否与饮食介导的寿命延长有关的研究只采用了几种饮食,但最近的数据表明,需要广泛的营养环境。在这里,我们提供了长寿果蝇的寿命数据,这些果蝇在九种不同的饮食中缺乏八种胰岛素样肽中的三种[果蝇胰岛素样肽2,3,5 (dilp2-3,5)],这些饮食围绕着最佳的寿命。它们的营养成分是通过单独控制糖和酵母浓度来改变的,从而结合了饮食限制和营养平衡的变化。在每一种饮食中,突变体的寿命都比对照组长得多,但对糖和酵母的寿命反应的影响有所不同。我们的数据表明,饮食平衡(DB)和饮食限制的更广泛的覆盖范围可以统一IIS如何参与寿命对饮食的反应的不同解释。
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引用次数: 9
Message from the new Co-Editor-in-Chief. 来自新任联合主编的信息。
IF 5 Q1 Medicine Pub Date : 2017-02-15 eCollection Date: 2017-01-01 DOI: 10.1038/s41514-017-0003-1
Shin-Ichiro Imai
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引用次数: 0
Functionally and morphologically damaged mitochondria observed in auditory cells under senescence-inducing stress. 衰老诱导应激下听觉细胞线粒体功能和形态损伤。
IF 5 Q1 Medicine Pub Date : 2017-01-25 eCollection Date: 2017-01-01 DOI: 10.1038/s41514-017-0002-2
Teru Kamogashira, Ken Hayashi, Chisato Fujimoto, Shinichi Iwasaki, Tatsuya Yamasoba

We aimed at determining the mitochondrial function in premature senescence model of auditory cells. Short exposure to H2O2 (1 h, 0.1 mM) induced premature cellular senescence in House Ear Institute-Organ of Corti 1 auditory cells. The transmission electron microscopy analysis revealed that damaged mitochondria and autophagosomes containing dense organelles appeared in the auditory cells after short exposure to H2O2. The branch and junction parameters of the skeletonized image of the mitochondria were found to decrease significantly in H2O2-treated cells. A branched reticulum of tubules was poorly formed, featuring coexistence of numerous tiny clusters along with few relatively large entities in the H2O2-treated cells. In terms of bioenergetics, H2O2-treatment led to the dose-dependent decrease in mitochondrial membrane potential in the auditory cells. The fragmented mitochondria (fusion < fission) were in a low potential. In addition, the potential of hyperfused mitochondria (fusion > fission) was slightly lower than the control cells. The short-time exposure of live auditory cells to H2O2 damaged the mitochondrial respiratory capacity without any effect on the baseline ATP production rates. The vulnerability of the mitochondrial membrane potential to the uncoupling reagent was increased after H2O2 treatment. Our findings indicated that the mitochondrial dysfunction due to the decline in the O2 consumption rate should be the first event of premature senescence process in the auditory cells, resulting in the imbalance of mitochondrial fusion/fission and the collapse of the mitochondrial network.

目的探讨听觉细胞早衰模型中线粒体功能的变化。短时间暴露于H2O2 (1 h, 0.1 mM)可诱导Corti 1型内耳听觉器官细胞过早衰老。透射电镜分析显示,短时间接触H2O2后,听觉细胞出现线粒体和含有致密细胞器的自噬体损伤。在h2o2处理的细胞中,线粒体骨架图像的分支和连接参数显著降低。在h2o2处理的细胞中,一个分枝的小管网形成不良,具有许多微小簇和少数相对较大的实体共存的特点。在生物能学方面,h2o2处理导致听细胞线粒体膜电位呈剂量依赖性降低。线粒体碎片化(融合裂变)略低于对照细胞。活体听觉细胞短时间暴露于H2O2会损伤线粒体呼吸能力,但对基线ATP生成率没有影响。H2O2处理后,线粒体膜电位对解偶联剂的易损性增加。我们的研究结果表明,由耗氧量下降引起的线粒体功能障碍应该是听觉细胞过早衰老过程的第一个事件,导致线粒体融合/裂变失衡,线粒体网络崩溃。
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引用次数: 1
Identification of transcription factors that promote the differentiation of human pluripotent stem cells into lacrimal gland epithelium-like cells. 鉴定促进人类多能干细胞分化为泪腺上皮样细胞的转录因子。
IF 5 Q1 Medicine Pub Date : 2017-01-24 eCollection Date: 2017-01-01 DOI: 10.1038/s41514-016-0001-8
Masatoshi Hirayama, Shigeru B H Ko, Tetsuya Kawakita, Tomohiko Akiyama, Sravan K Goparaju, Atsumi Soma, Yuhki Nakatake, Miki Sakota, Nana Chikazawa-Nohtomi, Shigeto Shimmura, Kazuo Tsubota, Minoru S H Ko

Dry eye disease is the most prevalent pathological condition in aging eyes. One potential therapeutic strategy is the transplantation of lacrimal glands, generated in vitro from pluripotent stem cells such as human embryonic stem cells, into patients. One of the preceding requirements is a method to differentiate human embryonic stem cells into lacrimal gland epithelium cells. As the first step for this approach, this study aims to identify a set of transcription factors whose overexpression can promote the differentiation of human embryonic stem cells into lacrimal gland epithelium-like cells. We performed microarray analyses of lacrimal glands and lacrimal glands-related organs obtained from mouse embryos and adults, and identified transcription factors enriched in lacrimal gland epithelium cells. We then transfected synthetic messenger RNAs encoding human orthologues of these transcription factors into human embryonic stem cells and examined whether the human embryonic stem cells differentiate into lacrimal gland epithelium-like cells by assessing cell morphology and marker gene expression. The microarray analysis of lacrimal glands tissues identified 16 transcription factors that were enriched in lacrimal gland epithelium cells. We focused on three of the transcription factors, because they are expressed in other glands such as salivary glands and are also known to be involved in the development of lacrimal glands. We tested the overexpression of various combinations of the three transcription factors and PAX6, which is an indispensable gene for lacrimal glands development, in human embryonic stem cells. Combining PAX6, SIX1, and FOXC1 caused significant changes in morphology, i.e., elongated cell shape and increased expression (both RNAs and proteins) of epithelial markers such as cytokeratin15, branching morphogenesis markers such as BARX2, and lacrimal glands markers such as aquaporin5 and lactoferrin. We identified a set of transcription factors enriched in lacrimal gland epithelium cells and demonstrated that the simultaneous overexpression of these transcription factors can differentiate human embryonic stem cells into lacrimal gland epithelium-like cells. This study suggests the possibility of lacrimal glands regeneration from human pluripotent stem cells.

干眼症是老年人眼睛最常见的病理状况。一种潜在的治疗策略是将多能干细胞(如人类胚胎干细胞)在体外生成的泪腺移植到患者体内。其中一个先决条件是找到将人类胚胎干细胞分化成泪腺上皮细胞的方法。作为这种方法的第一步,本研究旨在确定一组转录因子,其过度表达可促进人类胚胎干细胞分化为泪腺上皮样细胞。我们对小鼠胚胎和成鼠的泪腺和泪腺相关器官进行了芯片分析,并确定了泪腺上皮细胞中富含的转录因子。然后,我们将编码这些转录因子的人类同源物的合成信使RNA转染到人类胚胎干细胞中,并通过评估细胞形态和标记基因的表达,研究人类胚胎干细胞是否分化为泪腺上皮样细胞。通过对泪腺组织的芯片分析,我们发现了16个转录因子富集在泪腺上皮细胞中。我们重点研究了其中三个转录因子,因为它们在唾液腺等其他腺体中也有表达,而且已知它们也参与了泪腺的发育。我们测试了在人类胚胎干细胞中过表达这三种转录因子和PAX6(泪腺发育不可或缺的基因)的不同组合。将 PAX6、SIX1 和 FOXC1 结合使用会导致形态发生显著变化,即细胞形状变长,细胞角蛋白 15 等上皮标志物、BARX2 等分支形态发生标志物以及 aquaporin5 和乳铁蛋白等泪腺标志物的表达(包括 RNA 和蛋白质)增加。我们发现了一组富集于泪腺上皮细胞的转录因子,并证明同时过表达这些转录因子可将人类胚胎干细胞分化为泪腺上皮样细胞。这项研究表明,人类多能干细胞有可能实现泪腺再生。
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引用次数: 0
How does hormesis impact biology, toxicology, and medicine? 激效是如何影响生物学、毒理学和医学的?
IF 5 Q1 Medicine Pub Date : 2017-01-01 DOI: 10.1038/s41514-017-0013-z
Edward J Calabrese, Mark P Mattson

Hormesis refers to adaptive responses of biological systems to moderate environmental or self-imposed challenges through which the system improves its functionality and/or tolerance to more severe challenges. The past two decades have witnessed an expanding recognition of the concept of hormesis, elucidation of its evolutionary foundations, and underlying cellular and molecular mechanisms, and practical applications to improve quality of life. To better inform future basic and applied research, we organized and re-evaluated recent hormesis-related findings with the intent of incorporating new knowledge of biological mechanisms, and providing fundamental insights into the biological, biomedical and risk assessment implications of hormesis. As the literature on hormesis is expanding rapidly into new areas of basic and applied research, it is important to provide refined conceptualization of hormesis to aid in designing and interpreting future studies. Here, we establish a working compartmentalization of hormesis into ten categories that provide an integrated understanding of the biological meaning and applications of hormesis.

激效是指生物系统对适度的环境或自我施加的挑战做出的适应性反应,通过这种反应,系统可以提高其功能和/或对更严重挑战的耐受性。在过去的二十年里,人们对激效概念的认识不断扩大,对其进化基础和潜在的细胞和分子机制的阐明,以及在提高生活质量方面的实际应用。为了更好地为未来的基础和应用研究提供信息,我们组织并重新评估了最近与激效相关的发现,目的是结合生物学机制的新知识,并为激效在生物学、生物医学和风险评估方面的意义提供基本见解。随着有关激效的文献迅速扩展到基础和应用研究的新领域,提供精确的激效概念对于设计和解释未来的研究非常重要。在这里,我们将激效划分为十个类别,以提供对激效的生物学意义和应用的综合理解。
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引用次数: 324
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NPJ Aging and Mechanisms of Disease
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