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Structural insights into enzymatic mechanism of methylenetetrahydrofolate reductase (MTHFR) from Sphingobium sp. SYK-6 Sphingobium sp. SYK-6亚甲基四氢叶酸还原酶(MTHFR)酶促机制的结构研究
Pub Date : 2019-11-08 DOI: 10.1107/S0108767320098475
Hongyang Yu, N. Kuwabara, T. Senda
H Yu, N Kamimura, N Kuwabara, R Kato, M Senda, E Masai, T Senda 1 Structural Biology Research Center, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Department of Bioengineering, Nagaoka University of Technology, Nagaoka, SBRC, IMSS, KEK, Nagaoka University of Technology, High Energy Accelerator Research Organization (KEK), Tsukuba, Department of Bioengineering, Nagaoka University of Technology, Structural Bio Research Ctr Inst of Materials Structure , High Energy Accelerator Research Org, Tsukuba yuhong@post.kek.jp
Yu H, N Kamimura, N Kuwabara, R Kato, M Senda, E Masai, T Senda 1结构生物学研究中心,材料结构科学研究所,高能加速器研究机构(KEK),筑波,长冈工业大学生物工程系,长冈,SBRC, IMSS, KEK,长冈工业大学,高能加速器研究机构(KEK),筑波,长冈工业大学生物工程系,筑波高能加速器研究所材料结构研究所结构生物研究中心yuhong@post.kek.jp
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引用次数: 0
Crystal structure of FMN-free form of dihydroorotate dehydrogenase from Trypanosoma brucei . 布氏锥虫游离型二氢甲酯脱氢酶的晶体结构。
Pub Date : 2018-04-25 DOI: 10.2210/pdb5xfv/pdb
T. Kubota, O. Tani, Tomohiko Yamaguchi, I. Namatame, H. Sakashita, K. Furukawa, K. Yamasaki
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引用次数: 1
Deciphering the function of KLF4 as a differentiation inducer in haematologic malignancies KLF4在血液学恶性肿瘤中作为分化诱导剂的功能
Pub Date : 2016-11-08 DOI: 10.1182/BLOOD.V128.22.1546.1546
Hiroki Kiyose, K. Morita, Shintaro Maeda, Ken-ichi T. Suzuki, Chieko Tokushige, Yoshimi Yamada, S. Adachi, Yasuhiko Kamikubo
Kruppel-like factor4 (KLF4) is a member of the KLF family transcription factors, well known for its reprogramming capacities to promote iPS cell transformation. In the context of hematopoietic cells, the major role of KLF4 has attributed to its myeloid to monocyte differentiation capacity and considered to work as a tumor suppressor in acute myeloid leukemia (AML) or myeloid dysplastic syndrome (MDS)-derived cells. Ras-Raf-MEK-ERK pathway is consistently up-regulated in these tumor cells and we have previously reported the role of KLF4 as a major differentiation inducer in this setting, however, how does KLF4 induce monocytic differentiation under MEK-ERK pathway activation has remained unknown. We thus addressed this issue and found a novel key mediator of monocytic differentiation in myeloid leukemia cells. To identify essential downstream factors of KLF4 in myeloid leukemia cells, we first analyzed 3 independent gene expression microarray data sets of AML patients (GSE45194, GSE38810 and GSE22845). AML patients were divided into two groups according to their KLF4 expressions and top 1000 up-regulated genes in KLF4 high-expressing AML patients were extracted. Venn diagram was used to identify the overlapping genes in these data sets and we identified 26 candidate genes possibly involved in KLF4 mediated differentiation in hematologic malignancies. We then performed comprehensive quantitative real-time PCR (qRT-PCR) analysis to examine the expression of all of these candidate genes upon additive KLF4 expression in leukemia cell lines of MOLM-13 and THP-1 cells. Among these genes, KLF4 exceptionally up-regulated the expression of Dihydropyrimidinase like 2 (DPYSL2) over 200-folds. DPYSL2 consists DPYSL gene family. Since previous reports suggest their multiple roles in neuronal differentiation and polarity, as well as in axon growth and guidance, we hereafter focused on this DPYSL2 gene to reveal its veiled function in leukemia cells. Intriguingly, qRT-PCR assay demonstrated that KLF4 uniquely up-regulated the gene expression of DPYSL2 isoform1 among DPYSL family members. We confirmed the specific expression of DPYSL2 isoform1 upon additive KLF4 expression by immunoblotting in AML cells . Chromatin immunoprecipitation (ChIP) assay proved that KLF4 bound directly to the gene promoter region of DPYSL2 isoform1. We next induced the endogenous expression of KLF4 in myeloid leukemia cells using phorbol 12-myristate 13-acetate (PMA) which leads to a rapid and sustained activation of MEK and ERK, ultimately inducing a substantial monocytic differentiation in these cells. PMA treatment induced concomitant expressions of KLF4 and DPYSL2 isoform1 both at mRNA and protein levels in these cells. To assess the function of DPYSL2 isoform1 in myeloid leukemia cells, we generated tetracycline-inducible DPYSL2 isoform1-overexpressing human leukemia cell lines. Upon doxycycline treatment, these leukemia cells differentiated into monocytic lineage with marked CD11b
Kruppel-like factor4 (KLF4)是KLF家族转录因子的一员,以其促进iPS细胞转化的重编程能力而闻名。在造血细胞的背景下,KLF4的主要作用归因于其髓细胞向单核细胞分化的能力,并被认为是急性髓细胞白血病(AML)或髓细胞发育不良综合征(MDS)衍生细胞的肿瘤抑制因子。Ras-Raf-MEK-ERK通路在这些肿瘤细胞中持续上调,我们之前报道过KLF4在这种情况下作为主要分化诱导剂的作用,然而,在MEK-ERK通路激活下,KLF4如何诱导单核细胞分化仍然未知。因此,我们解决了这个问题,并发现了一个新的单核细胞分化髓系白血病细胞的关键介质。为了确定髓系白血病细胞中KLF4的必要下游因子,我们首先分析了3个独立的AML患者基因表达微阵列数据集(GSE45194、GSE38810和GSE22845)。将AML患者根据KLF4表达情况分为两组,提取KLF4高表达AML患者的前1000个上调基因。我们使用维恩图来识别这些数据集中的重叠基因,并确定了26个可能参与KLF4介导的血液恶性肿瘤分化的候选基因。然后,我们进行了全面的实时定量PCR (qRT-PCR)分析,以检测所有这些候选基因在MOLM-13和THP-1细胞白血病细胞系中KLF4的表达。其中KLF4异常上调双氢嘧啶酶样2 (Dihydropyrimidinase like 2, DPYSL2)的表达超过200倍。DPYSL2由DPYSL基因家族组成。由于之前的报道表明它们在神经元分化和极性以及轴突生长和引导中具有多种作用,因此我们将重点研究DPYSL2基因,以揭示其在白血病细胞中的隐藏功能。有趣的是,qRT-PCR分析表明,KLF4在DPYSL家族成员中唯一上调DPYSL2 isoform1的基因表达。我们通过免疫印迹法在AML细胞中证实了ddpysl2 isoform1在KLF4加性表达上的特异性表达。染色质免疫沉淀(ChIP)实验证实KLF4直接结合到DPYSL2异构体1的基因启动子区域。接下来,我们使用phorbol 12-肉豆蔻酸13-醋酸酯(PMA)诱导髓系白血病细胞内源性KLF4表达,导致MEK和ERK快速持续激活,最终诱导这些细胞大量单核细胞分化。PMA处理在这些细胞中诱导KLF4和DPYSL2异构体在mRNA和蛋白水平上同时表达。为了评估DPYSL2异构体在髓系白血病细胞中的功能,我们生成了四环素诱导的过表达DPYSL2异构体的人白血病细胞系。在强力霉素治疗下,这些白血病细胞分化为单核细胞谱系,CD11b和CD14细胞表面表达显著。接下来,我们利用CRISPR/Cas9基因修饰系统敲除KLF4过表达白血病细胞中的DPYSL2 isoform1,发现基因修饰后的细胞在KLF4过表达时保持未分化状态。我们还证实了shrna介导的部分下调ddpysl2异构体1在KLF4强制表达的白血病细胞中导致轻度抑制KLF4诱导的单核细胞分化。综上所述,这些结果支持ddpysl2异构体在髓系白血病细胞单核细胞分化中的重要性。我们的研究结果揭示了ddpysl2在血液恶性肿瘤中作为分化诱导剂的新作用,并可能为血液恶性肿瘤的治疗提供新的途径。无相关利益冲突需要申报。
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引用次数: 0
Analysis of the metabolic and antioxidative effects of taurine, a candidate calorie restriction mimetic compound 牛磺酸的代谢和抗氧化作用分析,牛磺酸是一种候选的卡路里限制模拟化合物
Pub Date : 2016-11-08 DOI: 10.1093/GERONI/IGX004.548
Zi Wang, Yoshihisa Ohata, S. Serizawa, S. Nishizono, T. Chiba
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引用次数: 1
Defining the stem cell lineages in the mouse inter-follicular epidermis 小鼠滤泡间表皮干细胞系的确定
Pub Date : 2016-11-08 DOI: 10.1016/J.JDERMSCI.2017.02.159
Aiko Sada, Fadi Jacob, E. Leung, S. Wang, B. S. White, D. Shalloway, T. Tumbar
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引用次数: 0
Allele-specific ablation rescues electrophysiological abnormalities in human iPS cell model of long-QT syndrome with a CALM2 mutation 等位基因特异性消融可修复CALM2突变的长qt综合征人iPS细胞模型的电生理异常
Pub Date : 2016-11-08 DOI: 10.14989/doctor.k20673
Yuta Yamamoto, T. Makiyama, T. Harita, K. Sasaki, M. Hayano, Suguru Nishiuchi, Yimin Wuriyanghai, H. Kohjitani, Sayako Hirose, Jiarong Chen, T. Ishikawa, S. Ohno, K. Chonabayashi, Y. Yoshida, M. Horie, N. Makita, Takeshi Kimura
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引用次数: 0
Cell-based Therapy for Parkinson's Disease 帕金森病的细胞疗法
Pub Date : 2016-11-08 DOI: 10.1299/JSMEBIO.2018.30.15PM1
J. Takahashi
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引用次数: 2
DNA methylome analysis in mouse germ cells and early embryos 小鼠生殖细胞和早期胚胎的DNA甲基组分析
Pub Date : 2016-11-08 DOI: 10.26226/morressier.573c1511d462b80296c9845b
Hisato Kobayashi, Tasuku Koike, A. Sakashita, H. Tsuno, Soichiro Kumamoto, T. Wakai, Takashi Sano, T. Kono
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引用次数: 0
Heterozygous Dnmt3a mutation induces expansion of hematopoietic stem cell pool in a murine model 杂合子Dnmt3a突变诱导小鼠造血干细胞库扩增
Pub Date : 2015-12-03 DOI: 10.1182/blood.v126.23.2355.2355
T. Higo, J. Koya, Yoshiki Sumitomo, Takako Tsuruta, K. Kataoka, T. Satou, M. Kurokawa
Somatic mutations in DNMT3A, a member of the DNA methyltransferase family, have been identified in various kinds of hematologic malignancies including acute myeloid leukemia (AML), acute lymphoblastic leukemia, myeloproliferative neoplasms, and aplastic anemia. Especially, in cytogenetically normal AML, DNMT3A mutations are detected in 15-20% of cases and associated with poor prognosis. Approximately 40 to 60% of DNMT3A mutations reside at Arg882 (R882), forming hot spot mutation site, implying gain-of-functional property of the mutation in development of leukemia. So far, a functional role of DNMT3A mutation in leukemogenesis has been investigated by overexpressing DNMT3A R882 mutant or Dnmt3a knockout in murine hematopoietic cells. However, the consequenses of DNMT3A R882 mutant with endogenous expression have been largely unknown. To elucidate this, we generated a novel mouse model for Cre-mediated conditional expression of Dnmt3a R878C mutant (homologous to human R882C) from the endogenous locus of Dnmt3a. For hematopoietic cell-specific mutation in vivo, we crossed these mice with Vav-Cre mice. By analyzing genotypes of offspring derived from the pair of Dnmt3aR878C/wt; Vav-Crewt/wt mice and Dnmt3aR882C/wt; Vav-Cretg/wt mice, it is revealed that mice harboring homozygous mutation of Dnmt3a in hematopoietic cells (DNMT3AR882C/R882C; Vav-Cretg/wt) were not born for now. In contrast, Dnmt3aR882C/wt; Vav-Cretg/wt (hereafter Dnmt3a R878C) mice were normally born and they did not show any hematological or other disorders at least until 40 weeks after birth. Additionally, frequencies of peripheral blood mature cells in each lineage are not altered in Dnmt3a R878C mice compared to Dnmt3awt/wt Vav-Cretg/wt (hereafter control mice). To further investigate the effect of DNMT3A R882 mutation, we sacrificed Dnmt3a R878C and control mice at 8-12 weeks after birth and compared the distribution of hematopoietic cells by using flow cytometry. Although there was no obvious difference in the number of mononuclear cells in the whole bone marrow, we found a significant increase of the frequency of long-term hematopoietic stem cells (defined by CD150+ CD48- Lineage- c-Kit+ Sca-1+) in Dnmt3a R878C mice compared to control mice (0.040% and 0.019%, p = 0.022). The frequencies of other progenitors including short-term hematopoietic stem cells, multipotent progenitors, or Lineage- c-Kit+ Sca-1+ (LSK) cells were not changed between Dnmt3a R878C mice and control mice. Moreover, in order to determine whether DNMT3A mutation leads to a qualitative difference in HSCs, we performed colony forming assay. While control LSK cells could not form colonies at fifth round of replating, Dnmt3a R878C LSK cells could be serially replated up to five passages. Additionally, the numbers of colonies in each round were much higher in Dnmt3a R878C cells compared to control cells, suggesting HSCs with heterozygous Dnmt3a R878C mutation have aberrantly enhanced self-renewal capacity. Current
DNA甲基转移酶家族成员DNMT3A的体细胞突变已在多种血液系统恶性肿瘤中被发现,包括急性髓性白血病(AML)、急性淋巴细胞白血病、骨髓增生性肿瘤和再生障碍性贫血。特别是,在细胞遗传学正常的AML中,15-20%的病例中检测到DNMT3A突变,并伴有不良预后。约40% - 60%的DNMT3A突变位于Arg882 (R882),形成热点突变位点,表明该突变在白血病的发展中具有功能获得性。到目前为止,通过在小鼠造血细胞中过表达DNMT3A R882突变体或敲除DNMT3A突变体,研究了DNMT3A突变在白血病发生中的功能作用。然而,内源性表达的DNMT3A R882突变体的后果在很大程度上是未知的。为了阐明这一点,我们建立了一种新的小鼠模型,用于cre介导的Dnmt3a R878C突变体(与人类R882C同源)的条件表达,该突变体来自Dnmt3a内源性位点。对于体内造血细胞特异性突变,我们将这些小鼠与Vav-Cre小鼠杂交。通过分析Dnmt3aR878C/wt对后代的基因型;Vav-Crewt/wt小鼠和Dnmt3aR882C/wt;Vav-Cretg/wt小鼠,发现造血细胞中携带Dnmt3a纯合突变的小鼠(DNMT3AR882C/R882C;Vav-Cretg/wt)目前还没有诞生。Dnmt3aR882C/wt;Vav-Cretg/wt(以下简称Dnmt3a R878C)小鼠正常出生,至少在出生后40周未出现任何血液学或其他疾病。此外,与Dnmt3awt/wt Vav-Cretg/wt(以下为对照小鼠)相比,Dnmt3a R878C小鼠中每个谱系的外周血成熟细胞频率没有改变。为了进一步研究DNMT3A R882突变的影响,我们在出生后8-12周处死DNMT3A R878C和对照小鼠,用流式细胞术比较造血细胞的分布。虽然整个骨髓中单个核细胞的数量没有明显差异,但我们发现Dnmt3a R878C小鼠的长期造血干细胞(定义为CD150+ CD48- Lineage- c-Kit+ Sca-1+)的频率与对照小鼠相比显著增加(0.040%和0.019%,p = 0.022)。其他祖细胞包括短期造血干细胞、多能祖细胞或Lineage- c-Kit+ Sca-1+ (LSK)细胞的频率在Dnmt3a R878C小鼠和对照小鼠之间没有变化。此外,为了确定DNMT3A突变是否导致hsc的质量差异,我们进行了集落形成实验。对照LSK细胞在第5轮复制时不能形成菌落,而Dnmt3a R878C LSK细胞可以连续复制5代。此外,与对照细胞相比,每轮Dnmt3a R878C细胞的菌落数量要高得多,这表明带有杂合Dnmt3a R878C突变的造血干细胞具有异常增强的自我更新能力。目前,我们正在进行竞争性骨髓移植试验,以评估DNMT3A突变在体内的功能作用。我们将来自Dnmt3a R878C或对照小鼠的50万个具有Ly5.2背景的骨髓细胞与相同数量的携带ly5.1的竞争细胞一起移植到携带ly5.1的致命辐照受体小鼠中。到目前为止,Dnmt3a R878C突变细胞受体的供体细胞的外周血嵌合性往往高于对照小鼠,这表明Dnmt3a R878C突变的杂合性有助于造血干细胞库的扩大。总的来说,杂合的Dnmt3a R878C突变体增强了造血干细胞的自我更新能力,导致造血干细胞在体内的积累,类似于Dnmt3a R882突变体过表达的小鼠模型。我们的研究结果显示,内源性DNMT3A突变体的表达足以使hsc扩增,揭示了DNMT3A突变在形成hsc癌前状态的骨干中的功能贡献。无相关利益冲突需要申报。
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The Molecular Biology Society of Japan
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