Pub Date : 2021-05-20DOI: 10.5772/INTECHOPEN.97005
S. Lata, R. Yadav, B. S. Tomar
Okra (Abelmoschus esculentus L. Moench), is an important vegetable crop with limited studies on genomics. It is considered as an essential constituent for balanced food due to its dietary fibers, amino-acid and vitamins. It is most widely cultivated for its pods throughout Asia and Africa. Most of the okra cultivation is done exclusively in the developing countries of Asia and Africa with very poor productivity. India ranks first in the world with a production of 6.3 million MT (72% of the total world production). Cultivated okra is mostly susceptible to a large number of begomoviruses. Yellow vein mosaic disease (YVMD) caused by Yellow vein mosaic virus (YVMV) of genus Begomovirus (family Geminiviridae) results in the serious losses in okra cultivation. Symptoms of YVMD are chlorosis and yellowing of veins and veinlets at various levels, small size leaves, lesser and smaller fruits, and stunting growth. The loss in yield, due to YVMD in okra was found ranging from 30 to 100% depending on the age of the plant at the time of infection. Exploitation of biotechnological tools in okra improvement programmes is often restricted, due to the non availability of abundant polymorphic molecular markers and defined genetic maps. Moreover, okra genome is allopolyploid in nature and possess a large number of chromosomes (2n = 56–196) which makes it more complicated. Genomics tools like RNA- seq. for transcriptome analysis has emerged as a powerful tool to identify novel transcript/gene sequences in non-model plants like okra.
秋葵(Abelmoschus esculentus L. Moench)是一种重要的蔬菜作物，基因组学研究较少。由于富含膳食纤维、氨基酸和维生素，它被认为是均衡食物的必要成分。它的豆荚在亚洲和非洲被广泛种植。大部分秋葵种植都是在亚洲和非洲的发展中国家进行的，这些国家的生产力非常低。印度以630万吨的产量排名世界第一(占世界总产量的72%)。栽培的秋葵最容易感染大量的begomovirus。黄脉花叶病(YVMD)是由双病毒科begomavirus属的黄脉花叶病毒(YVMV)引起的黄秋葵病，是造成黄秋葵种植严重损失的主要原因。YVMD的症状是不同程度的静脉和小静脉变绿和变黄，叶片小，果实越来越小，生长发育迟缓。秋葵YVMD造成的产量损失在30%到100%之间，这取决于感染时植株的年龄。由于缺乏丰富的多态分子标记和确定的遗传图谱，在秋葵改良计划中利用生物技术工具往往受到限制。此外，秋葵基因组本质上是异源多倍体，并且拥有大量的染色体(2n = 56-196)，这使得它的基因组结构更加复杂。基因组学工具如RNA- seq。转录组分析已成为鉴定秋葵等非模式植物中新的转录/基因序列的有力工具。
{"title":"Genomic Tools to Accelerate Improvement in Okra (Abelmoschus esculentus)","authors":"S. Lata, R. Yadav, B. S. Tomar","doi":"10.5772/INTECHOPEN.97005","DOIUrl":"https://doi.org/10.5772/INTECHOPEN.97005","url":null,"abstract":"Okra (Abelmoschus esculentus L. Moench), is an important vegetable crop with limited studies on genomics. It is considered as an essential constituent for balanced food due to its dietary fibers, amino-acid and vitamins. It is most widely cultivated for its pods throughout Asia and Africa. Most of the okra cultivation is done exclusively in the developing countries of Asia and Africa with very poor productivity. India ranks first in the world with a production of 6.3 million MT (72% of the total world production). Cultivated okra is mostly susceptible to a large number of begomoviruses. Yellow vein mosaic disease (YVMD) caused by Yellow vein mosaic virus (YVMV) of genus Begomovirus (family Geminiviridae) results in the serious losses in okra cultivation. Symptoms of YVMD are chlorosis and yellowing of veins and veinlets at various levels, small size leaves, lesser and smaller fruits, and stunting growth. The loss in yield, due to YVMD in okra was found ranging from 30 to 100% depending on the age of the plant at the time of infection. Exploitation of biotechnological tools in okra improvement programmes is often restricted, due to the non availability of abundant polymorphic molecular markers and defined genetic maps. Moreover, okra genome is allopolyploid in nature and possess a large number of chromosomes (2n = 56–196) which makes it more complicated. Genomics tools like RNA- seq. for transcriptome analysis has emerged as a powerful tool to identify novel transcript/gene sequences in non-model plants like okra.","PeriodicalId":328233,"journal":{"name":"Landraces - Traditional Variety and Natural Breed [Working Title]","volume":"18 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114144955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-03-20DOI: 10.5772/INTECHOPEN.96865
D. Sharma, Rajesh K. Khulbe, Ramesh S. Pal, Jeevan Bettanaika, L. Kant
Maize (Zea mays ssp. mays) originated from Mexico and Central America and grew worldwide for food, feed and industrial products components. It possesses ten chromosomes with a genome size of 2.3 gigabases. Teosinte (Z. mays ssp. parviglumis) is the probable progenitor of the modern-day maize. The maize domestication favored standing gain of function and regulatory variations acquired the convergent phenotypes. The genomic loci teosinte branched 1 (tb1) and teosinte glume architecture 1 (tga1) played a central role in transforming teosinte to modern-day maize. Under domestication and crop improvement, only 2% (~1200) genes were undergone selection, out of ~60000 genes. Around ~98% of the genes have not experienced selection; there is enormous variation present in the diverse inbred lines that can be potentially utilized to identify QTLs and crop improvement through plant breeding. The genomic resources of wild relatives and landraces harbor the unexplored genes/alleles for biotic/abiotic tolerance, productivity and nutritional quality. The human-made evolution led to the transformation of wild relatives/landraces to the modern-day maize. This chapter summarized the maize’s wild relatives/landraces and the genetic gain over time in biotic/abiotic, productivity, and nutritional quality traits.
{"title":"Wild Progenitor and Landraces Led Genetic Gain in the Modern-Day Maize (Zea maysL.)","authors":"D. Sharma, Rajesh K. Khulbe, Ramesh S. Pal, Jeevan Bettanaika, L. Kant","doi":"10.5772/INTECHOPEN.96865","DOIUrl":"https://doi.org/10.5772/INTECHOPEN.96865","url":null,"abstract":"Maize (Zea mays ssp. mays) originated from Mexico and Central America and grew worldwide for food, feed and industrial products components. It possesses ten chromosomes with a genome size of 2.3 gigabases. Teosinte (Z. mays ssp. parviglumis) is the probable progenitor of the modern-day maize. The maize domestication favored standing gain of function and regulatory variations acquired the convergent phenotypes. The genomic loci teosinte branched 1 (tb1) and teosinte glume architecture 1 (tga1) played a central role in transforming teosinte to modern-day maize. Under domestication and crop improvement, only 2% (~1200) genes were undergone selection, out of ~60000 genes. Around ~98% of the genes have not experienced selection; there is enormous variation present in the diverse inbred lines that can be potentially utilized to identify QTLs and crop improvement through plant breeding. The genomic resources of wild relatives and landraces harbor the unexplored genes/alleles for biotic/abiotic tolerance, productivity and nutritional quality. The human-made evolution led to the transformation of wild relatives/landraces to the modern-day maize. This chapter summarized the maize’s wild relatives/landraces and the genetic gain over time in biotic/abiotic, productivity, and nutritional quality traits.","PeriodicalId":328233,"journal":{"name":"Landraces - Traditional Variety and Natural Breed [Working Title]","volume":"4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122348978","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-03-03DOI: 10.5772/INTECHOPEN.95768
A. Gáspárdy
This chapter deals with the study of extranuclear hereditary material and the possibilities of using it to maintain endangered animal breeds. The chapter characterizes mtDNA, presents its genes and their functions, while also emphasizing the hypervariable control region. It reports on the results of previous researches, referring to international publications. It sheds light on promising areas of mitogenomic research. It shows the maternal genetic background of local native varieties according to the results of the study of available country/geographical region. It deals with reasons for endangerment and the arguments for preservation of autochthonous breeds. In addition, it gives place to discuss some exciting professional concepts in rare breed preservation.
{"title":"Reality of Mitogenome Investigation in Preservation of Native Domestic Sheep Breeds","authors":"A. Gáspárdy","doi":"10.5772/INTECHOPEN.95768","DOIUrl":"https://doi.org/10.5772/INTECHOPEN.95768","url":null,"abstract":"This chapter deals with the study of extranuclear hereditary material and the possibilities of using it to maintain endangered animal breeds. The chapter characterizes mtDNA, presents its genes and their functions, while also emphasizing the hypervariable control region. It reports on the results of previous researches, referring to international publications. It sheds light on promising areas of mitogenomic research. It shows the maternal genetic background of local native varieties according to the results of the study of available country/geographical region. It deals with reasons for endangerment and the arguments for preservation of autochthonous breeds. In addition, it gives place to discuss some exciting professional concepts in rare breed preservation.","PeriodicalId":328233,"journal":{"name":"Landraces - Traditional Variety and Natural Breed [Working Title]","volume":"135 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132775728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-02-26DOI: 10.5772/INTECHOPEN.96067
B. Furman, A. Noorani, C. Mba
In 2019, nearly 690 million people were hungry, indicating that the achievement of Zero Hunger by 2030 is not on-track. The enhanced conservation and use of crop diversity, which demonstrably improves farm productivity and hence food security and nutrition, could be one of the solutions to this problem. The broadening of the inter- and intra-specific diversity of crops contributes to dietary diversification and nutrition and improves the resilience of production systems to shocks, especially the biotic and abiotic stresses attributed to climate change. Examples of successful interventions that resulted in enhanced on-farm crop diversity are provided. Relevant tools and guidelines to strengthen national capacities for the enhanced on-farm management of plant genetic resources for food and agriculture are also highlighted. Guidance, based primarily on the Second Global Plan of Action for Plant Genetic Resources for Food and Agriculture, is presented to enable the conservation of farmers’ varieties/landraces, their genetic improvement and seed delivery systems; promote their cultivation, consumption and marketing; develop and implement policies; foster partnerships and strengthen requisite institutional and human capacities. Finally, the case is made for research and development, including using modern techniques, to achieve these aims.
{"title":"On-Farm Crop Diversity for Advancing Food Security and Nutrition","authors":"B. Furman, A. Noorani, C. Mba","doi":"10.5772/INTECHOPEN.96067","DOIUrl":"https://doi.org/10.5772/INTECHOPEN.96067","url":null,"abstract":"In 2019, nearly 690 million people were hungry, indicating that the achievement of Zero Hunger by 2030 is not on-track. The enhanced conservation and use of crop diversity, which demonstrably improves farm productivity and hence food security and nutrition, could be one of the solutions to this problem. The broadening of the inter- and intra-specific diversity of crops contributes to dietary diversification and nutrition and improves the resilience of production systems to shocks, especially the biotic and abiotic stresses attributed to climate change. Examples of successful interventions that resulted in enhanced on-farm crop diversity are provided. Relevant tools and guidelines to strengthen national capacities for the enhanced on-farm management of plant genetic resources for food and agriculture are also highlighted. Guidance, based primarily on the Second Global Plan of Action for Plant Genetic Resources for Food and Agriculture, is presented to enable the conservation of farmers’ varieties/landraces, their genetic improvement and seed delivery systems; promote their cultivation, consumption and marketing; develop and implement policies; foster partnerships and strengthen requisite institutional and human capacities. Finally, the case is made for research and development, including using modern techniques, to achieve these aims.","PeriodicalId":328233,"journal":{"name":"Landraces - Traditional Variety and Natural Breed [Working Title]","volume":"31 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-02-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131795827","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-02-17DOI: 10.5772/INTECHOPEN.96138
R. Sumalan, S. Ciulca, R. Sumalan, S. Popescu
Crop diversity of vegetable species is threatened by the current homogenization of agricultural production systems due to specialization of plant breeders and increasing globalization in the seed sector. With the onset of modern agriculture, most traditional vegetable cultivars were replaced by highly productive and often genetically uniform commercial breeds and hybrids. This led to the loss of landraces, especially in countries with a super-intensive agriculture. The agricultural biodiversity erosion represents a huge risk for food safety and security. Vegetable landraces are associated with the cultural heritage of their place of origin being adapted to local agro-ecological areas and are more resilient to environmental stress than commercial cultivars. The chapter aim to highlight the importance of keeping and using vegetable landraces as valuable sources of genes for traditional farmers, but also for future breeding processes. We analyze the historical role of landraces, genetic diversity, high physiological adaptability to specific local conditions in association with traditional farming systems, as well as the breeding perspectives and evaluation of genetic diversity based on molecular markers.
{"title":"Vegetable Landraces: The “Gene Banks” for Traditional Farmers and Future Breeding Programs","authors":"R. Sumalan, S. Ciulca, R. Sumalan, S. Popescu","doi":"10.5772/INTECHOPEN.96138","DOIUrl":"https://doi.org/10.5772/INTECHOPEN.96138","url":null,"abstract":"Crop diversity of vegetable species is threatened by the current homogenization of agricultural production systems due to specialization of plant breeders and increasing globalization in the seed sector. With the onset of modern agriculture, most traditional vegetable cultivars were replaced by highly productive and often genetically uniform commercial breeds and hybrids. This led to the loss of landraces, especially in countries with a super-intensive agriculture. The agricultural biodiversity erosion represents a huge risk for food safety and security. Vegetable landraces are associated with the cultural heritage of their place of origin being adapted to local agro-ecological areas and are more resilient to environmental stress than commercial cultivars. The chapter aim to highlight the importance of keeping and using vegetable landraces as valuable sources of genes for traditional farmers, but also for future breeding processes. We analyze the historical role of landraces, genetic diversity, high physiological adaptability to specific local conditions in association with traditional farming systems, as well as the breeding perspectives and evaluation of genetic diversity based on molecular markers.","PeriodicalId":328233,"journal":{"name":"Landraces - Traditional Variety and Natural Breed [Working Title]","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129677720","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-02-11DOI: 10.5772/INTECHOPEN.95916
Perumal Ponraj, A. De, D. Bhattacharya
Andaman and Nicobar Islands are endowed with immaculate flora and fauna biodiversity. Among the indigenous livestock species, pig occupies 27.26%. Andaman and Nicobar Islands have three different categories of domestic pig groups/breeds. Andaman Local pig is prevalent in Andaman group of Islands (South, Middle and North Andaman); Nicobari pig is in Nicobar group of Islands and long snouted Little Andaman wild pig (Schedule II animal under Forest Act, India). Other than the indigenous pigs, pure and crossbreds of Large White Yorkshire are available in Andaman and Nicobar Islands. Nicobari Pigs are reared exclusively by Nicobari tribes in Nicobar group of islands and create a well defined socio-economic-ecological status of their tribal society. Nicobari pig occupies a prominent place in custom, festivals and socio-economic status of Nicobari tribes. These Andaman local and Nicobari pigs are reared for meat purpose under free range or semi-intensive system. Nicobari pig is appeared as short, black/brownish in colour and living as a family. Andaman local pig is available in Andaman group of islands and body colour differs from rusty grey to black and brown. Neck and dorsal portion hair are long and thick whereas flank and sides hairs are shorter and thinner. Wild pig of Andaman (Sus scrofa andamanensis) is a most endangered porcine species of Andaman and Nicobar islands. Jarawa tribes in Andaman Islands prefer this wild pig as a good protein source. It is black in colour, short legged, small to medium sized and a prolific breeder. Litter size varies from 4 to 7 numbers. Another pig group is crossbred, cross between Large White Yorkshire and Andaman local or Nicobari pig. Crossbred pigs are light brown to complete white with different lines of blackish colour. This breed exhibits early maturity, high growth rate and fecundity. The Nicobari pig has high prolificacy as litter size is ranging from 8 to 10 numbers with good mothering ability and body weight of matured pig differs from 115 to 130 kg. Moreover, this crossbred is adapted highly to the local tropical humid environmental conditions and also can adjust with locally available feed resources on the different agricultural produces. This is highly suitable for commercial production of pork in this Andaman and Nicobar islands. However, the domestic pig breeds need to be protected and be conserved in this Andaman and Nicobar group of Islands.
{"title":"Domestic Pig Germplasms of Andaman and Nicobar Islands","authors":"Perumal Ponraj, A. De, D. Bhattacharya","doi":"10.5772/INTECHOPEN.95916","DOIUrl":"https://doi.org/10.5772/INTECHOPEN.95916","url":null,"abstract":"Andaman and Nicobar Islands are endowed with immaculate flora and fauna biodiversity. Among the indigenous livestock species, pig occupies 27.26%. Andaman and Nicobar Islands have three different categories of domestic pig groups/breeds. Andaman Local pig is prevalent in Andaman group of Islands (South, Middle and North Andaman); Nicobari pig is in Nicobar group of Islands and long snouted Little Andaman wild pig (Schedule II animal under Forest Act, India). Other than the indigenous pigs, pure and crossbreds of Large White Yorkshire are available in Andaman and Nicobar Islands. Nicobari Pigs are reared exclusively by Nicobari tribes in Nicobar group of islands and create a well defined socio-economic-ecological status of their tribal society. Nicobari pig occupies a prominent place in custom, festivals and socio-economic status of Nicobari tribes. These Andaman local and Nicobari pigs are reared for meat purpose under free range or semi-intensive system. Nicobari pig is appeared as short, black/brownish in colour and living as a family. Andaman local pig is available in Andaman group of islands and body colour differs from rusty grey to black and brown. Neck and dorsal portion hair are long and thick whereas flank and sides hairs are shorter and thinner. Wild pig of Andaman (Sus scrofa andamanensis) is a most endangered porcine species of Andaman and Nicobar islands. Jarawa tribes in Andaman Islands prefer this wild pig as a good protein source. It is black in colour, short legged, small to medium sized and a prolific breeder. Litter size varies from 4 to 7 numbers. Another pig group is crossbred, cross between Large White Yorkshire and Andaman local or Nicobari pig. Crossbred pigs are light brown to complete white with different lines of blackish colour. This breed exhibits early maturity, high growth rate and fecundity. The Nicobari pig has high prolificacy as litter size is ranging from 8 to 10 numbers with good mothering ability and body weight of matured pig differs from 115 to 130 kg. Moreover, this crossbred is adapted highly to the local tropical humid environmental conditions and also can adjust with locally available feed resources on the different agricultural produces. This is highly suitable for commercial production of pork in this Andaman and Nicobar islands. However, the domestic pig breeds need to be protected and be conserved in this Andaman and Nicobar group of Islands.","PeriodicalId":328233,"journal":{"name":"Landraces - Traditional Variety and Natural Breed [Working Title]","volume":"20 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2021-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132040378","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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