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Diversity of fungi associated with petroglyph sites in the Negev Desert, Israel, and their potential role in bioweathering 以色列内盖夫沙漠岩画遗址相关真菌的多样性及其在生物风化中的潜在作用
Pub Date : 2024-07-05 DOI: 10.3389/ffunb.2024.1400380
Laura Rabbachin, Irit Nir, Monika Waldherr, Ylenia Vassallo, G. Piñar, Alexandra Graf, Ariel Kushmaro, Katja Sterflinger
The petroglyphs of the Negev Desert, Israel, are famous and valuable archaeological remains. Previous studies have investigated the microbial communities associated with petroglyphs and their potential role in stone deterioration; nevertheless, the role of fungi remains unclear. In this study, the fungal communities present on the stone and, as a comparison, in the surrounding environment (soil and air) at Negev petroglyph sites were analyzed by means of culture-dependent and -independent (metagenomic) techniques. The metagenomic results showed a high fungal biodiversity in the soil, and both approaches highlighted the prevalence of species producing melanized, large, thick-walled spores (mainly Alternaria spp.). From the air sampling, mostly Cladosporium spp. were retrieved. On the other hand, on the rock, the results seem to indicate a low presence of fungi, but with a rock-specialized mycobiota consisting of extremotolerant microcolonial fungi (MCF) (e.g., Vermiconidia and Coniosporium) and lichens (Flavoplaca). In addition, low proportions of cosmopolitan fungi were detected on the stone, but the comparison of the data clearly indicates that they are transients from the surrounding environment. The ability of the isolated strains to dissolve CaCO3 and therefore be a potential threat to the petroglyphs (limestone substrate) was tested, but only one strain resulted in positive acid production under laboratory conditions. Nevertheless, both lichens and MCF detected in this study are well-known stone deteriogens, which may have a significant impact on the petroglyph’s deterioration.
以色列内盖夫沙漠的岩画是著名而珍贵的考古遗迹。以前的研究已经调查了与岩画相关的微生物群落及其在石质退化中的潜在作用,但真菌的作用仍不清楚。在这项研究中,通过依赖培养和不依赖培养的(元基因组)技术,分析了内盖夫岩画遗址石块上的真菌群落以及周围环境(土壤和空气)中的真菌群落。元基因组结果表明,土壤中的真菌具有高度的生物多样性,这两种方法都强调了产生黑色、大型、厚壁孢子的物种(主要是Alternaria属)的普遍性。从空气取样中发现的主要是 Cladosporium 菌属。另一方面,在岩石上,结果似乎表明真菌的存在率较低,但岩石专用菌群由耐受性极强的微殖真菌(MCF)(如 Vermiconidia 和 Coniosporium)和地衣(Flavoplaca)组成。此外,在石头上检测到的世界性真菌比例较低,但数据对比清楚地表明,它们是来自周围环境的过客。对分离出的菌株溶解 CaCO3 的能力以及因此对岩画(石灰岩基质)造成潜在威胁的能力进行了测试,但只有一种菌株在实验室条件下产生了阳性酸。不过,本研究中检测到的地衣和 MCF 都是众所周知的石质变质剂,可能会对岩画的恶化产生重大影响。
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引用次数: 0
OPFR removal by white rot fungi: screening of removers and approach to the removal mechanism 白腐真菌对 OPFR 的去除:去除剂的筛选和去除机制的探索
Pub Date : 2024-05-17 DOI: 10.3389/ffunb.2024.1387541
Diana Losantos, Montserrat Sarra, Glòria Caminal
The persistent presence of organophosphate flame retardants (OPFRs) in wastewater (WW) effluents raises significant environmental and health concerns, highlighting the limitations of conventional treatments for their remotion. Fungi, especially white rot fungi (WRF), offer a promising alternative for OPFR removal. This study sought to identify fungal candidates (from a selection of four WRF and two Ascomycota fungi) capable of effectively removing five frequently detected OPFRs in WW: tributyl phosphate (TnBP), tributoxy ethyl phosphate (TBEP), trichloroethyl phosphate (TCEP), trichloro propyl phosphate (TCPP) and triethyl phosphate (TEP). The objective was to develop a co-culture approach for WW treatment, while also addressing the utilization of less assimilable carbon sources present in WW. Research was conducted on carbon source uptake and OPFR removal by all fungal candidates, while the top degraders were analyzed for biomass sorption contribution. Additionally, the enzymatic systems involved in OPFR degradation were identified, along with toxicity of samples after fungal contact. Acetate (1.4 g·L-1), simulating less assimilable organic matter in the carbon source uptake study, was eliminated by all tested fungi in 4 days. However, during the initial screening where the removal of four OPFRs (excluding TCPP) was tested, WRF outperformed Ascomycota fungi. Ganoderma lucidum and Trametes versicolor removed over 90% of TnBP and TBEP within 4 days, with Pleorotus ostreatus and Pycnoporus sanguineus also displaying effective removal. TCEP removal was challenging, with only G. lucidum achieving partial removal (47%). A subsequent screening with selected WRF and the addition of TCPP revealed TCPP’s greater susceptibility to degradation compared to TCEP, with T. versicolor exhibiting the highest removal efficiency (77%). This observation, plus the poor degradation of TEP by all fungal candidates suggests that polarity of an OPFR inversely correlates with its susceptibility to fungal degradation. Sorption studies confirmed the ability of top-performing fungi of each selected OPFR to predominantly degrade them. Enzymatic system tests identified the CYP450 intracellular system responsible for OPFR degradation, so reactions of hydroxylation, dealkylation and dehalogenation are possibly involved in the degradation pathway. Finally, toxicity tests revealed transformation products obtained by fungal degradation to be more toxic than the parent compounds, emphasizing the need to identify them and their toxicity contributions. Overall, this study provides valuable insights into OPFR degradation by WRF, with implications for future WW treatment using mixed consortia, emphasizing the importance of reducing generated toxicity.
有机磷阻燃剂(OPFR)在废水(WW)排放物中的持续存在引起了人们对环境和健康的极大关注,凸显了传统去除方法的局限性。真菌,尤其是白腐真菌(WRF),为去除 OPFR 提供了一种前景广阔的替代方法。本研究试图从四种白腐真菌和两种子囊菌群真菌中找出能够有效去除 WW 中五种常见 OPFR 的候选真菌:磷酸三丁酯 (TnBP)、磷酸三丁氧基乙酯 (TBEP)、磷酸三氯乙酯 (TCEP)、磷酸三氯丙酯 (TCPP) 和磷酸三乙酯 (TEP)。目的是开发一种用于处理 WW 的共培养方法,同时解决 WW 中同化性较低的碳源的利用问题。对所有候选真菌的碳源吸收和 OPFR 去除情况进行了研究,同时分析了降解率最高的真菌对生物质吸附的贡献。此外,还确定了参与 OPFR 降解的酶系统,以及真菌接触后样品的毒性。在碳源吸收研究中,乙酸酯(1.4 g-L-1)模拟了较少同化的有机物,所有受试真菌都能在 4 天内消除乙酸酯。不过,在对四种 OPFR(不包括 TCPP)的去除进行初步筛选时,WRF 的表现优于子囊菌属真菌。灵芝和 Trametes versicolor 能在 4 天内去除 90% 以上的 TnBP 和 TBEP,Pleorotus ostreatus 和 Pycnoporus sanguineus 也能有效去除。TCEP 的去除具有挑战性,只有 G. lucidum 实现了部分去除(47%)。随后使用选定的 WRF 和添加的 TCPP 进行筛选,发现与 TCEP 相比,TCPP 更容易降解,其中 T. versicolor 的去除效率最高(77%)。这一观察结果以及所有候选真菌对 TEP 的降解效果都很差,表明 OPFR 的极性与其对真菌降解的敏感性成反比。吸附研究证实,性能最好的真菌对每种选定的 OPFR 都有主要降解能力。酶系统测试确定了细胞内负责 OPFR 降解的 CYP450 系统,因此羟化、脱烷基和脱卤反应可能参与了降解途径。最后,毒性测试表明,真菌降解得到的转化产物比母体化合物毒性更强,因此有必要对它们及其毒性贡献进行鉴定。总之,这项研究为水生生物反应器降解 OPFR 提供了宝贵的见解,对未来使用混合菌群处理 WW 具有重要意义,并强调了降低所产生的毒性的重要性。
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引用次数: 0
Characterization of melanin from Exophiala mesophila with the prospect of potential biotechnological applications 介壳虫黑色素的特征及潜在的生物技术应用前景
Pub Date : 2024-05-15 DOI: 10.3389/ffunb.2024.1390724
Cristy Medina-Armijo, Ibraheem Yousef, Antonio Berná, Anna Puerta, A. Esteve-Núñez, Marc Viñas, F. Prenafeta-Boldú
Fungal melanin is an underexplored natural biomaterial of great biotechnological interest in different areas. This study investigated the physical, chemical, electrochemical, and metal-binding properties of melanin extracted from the metallotolerant black fungus Exophiala mesophila strain IRTA-M2-F10.Specific inhibitory studies with tricyclazole and biochemical profiling of whole cells by synchrotron radiation-based Fourier-transform infrared spectral microscopy (SR-FTIRM) were performed. An optimized extraction protocol was implemented, and purified fungal melanin was characterized using an array of spectrophotometric techniques (UV-Vis, FTIR, and EPR) and by cyclic voltammetry (CV) experiments. The metal-binding capacity of melanin extracts was also assessed by using Cr(VI) as a model heavy metal.Inhibitory studies indicated that 1,8-dihydroxynaphthalene may be the main precursor molecule of E. mesophila melanin (DHN-melanin). The biochemical characterization of fungal melanin extracts were benchmarked against those from two melanins comprising the precursor molecule L-3,4-dihydroxiphenylalanine (DOPA-melanin): extracts from the ink of the cephalopod Sepia officinalis and DOPA-melanin synthesized in the laboratory. The CV results of melanin extracts incubated with and without cell suspensions of the electroconductive bacterium Geobacter sulfurreducens were indicative of novel semiquinone/hydroquinone redox transformations specific for each melanin type. These interactions may play an important role in cation exchange for the adsorption of metals and in microbial interspecies electron transfer processes.The obtained results provided further evidence for the DHN-nature of E. mesophila melanin. The FTIR profiling of melanin extracts exposed to Cr(VI), compared to unexposed melanin, resulted in useful information on the distinct surface-binding properties of fungal melanin. The parameters of the Langmuir and Freundlicht isotherms for the adsorption of Cr(VI) were determined and compared to bibliographic data. Altogether, the inherent properties of fungal melanin suggest its promising potential as a biomaterial for environmental applications.
真菌黑色素是一种未被充分开发的天然生物材料,在不同领域具有重要的生物技术价值。本研究调查了从耐金属黑真菌 Exophiala mesophila 菌株 IRTA-M2-F10 中提取的黑色素的物理、化学、电化学和金属结合特性。研究人员使用三环唑进行了特异性抑制研究,并通过同步辐射傅立叶变换红外光谱显微镜(SR-FTIRM)对整个细胞进行了生化分析。实验采用了优化的提取方案,并利用一系列分光光度法(紫外可见光、傅立叶变换红外光谱和电致发光光谱)和循环伏安法(CV)实验对纯化的真菌黑色素进行了表征。抑制研究表明,1,8-二羟基萘可能是嗜介壳虫黑色素(DHN-黑色素)的主要前体分子。真菌黑色素提取物的生化特征与两种黑色素(包括前体分子 L-3,4-二羟基联苯丙氨酸(DOPA-黑色素))的生化特征进行了比较,这两种黑色素分别来自头足类动物海龙(Sepia officinalis)的墨水提取物和实验室合成的 DOPA-黑色素。黑色素萃取物与导电细菌 Geobacter sulfurreducens 的细胞悬浮液一起或不一起培养的 CV 结果表明,每种黑色素类型都有特定的新型半醌/对苯二酚氧化还原转化。这些相互作用可能在阳离子交换吸附金属和微生物种间电子传递过程中发挥重要作用。与未暴露的黑色素相比,暴露于六价铬的黑色素提取物的傅立叶变换红外光谱分析提供了真菌黑色素独特的表面结合特性的有用信息。确定了吸附六价铬的 Langmuir 和 Freundlicht 等温线参数,并与文献数据进行了比较。总之,真菌黑色素的固有特性表明,它作为一种生物材料在环境应用方面具有广阔的潜力。
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引用次数: 0
Unveiling the menace: a thorough review of potential pandemic fungal disease 揭开威胁的面纱:彻底审查潜在的大流行真菌病
Pub Date : 2024-04-22 DOI: 10.3389/ffunb.2024.1338726
Mahdi Jafarlou
Fungal diseases have emerged as a significant global health threat, with the potential to cause widespread outbreaks and significant morbidity and mortality. Anticipating future pandemic fungal diseases is essential for effective preparedness and response strategies. This comprehensive literature review aims to provide a comprehensive analysis of the existing research on this topic. Through an extensive examination of scholarly articles, this review identifies potential fungal pathogens that have the potential to become pandemics in the future. It explores the factors contributing to the emergence and spread of these fungal diseases, including climate change, globalization, and antimicrobial resistance. The review also discusses the challenges in diagnosing and treating these diseases, including limited access to diagnostic tools and antifungal therapies. Furthermore, it examines the strategies and interventions that can be employed to mitigate the impact of future pandemic fungal diseases, such as improved surveillance systems, public health education, and research advancements. The findings of this literature review contribute to our understanding of the potential risks posed by fungal diseases and provide valuable insights for public health professionals and policymakers in effectively preparing for and responding to future pandemic outbreaks. Overall, this review emphasizes the importance of proactive measures and collaborative efforts to anticipate and mitigate the impact of future pandemic fungal diseases.
真菌疾病已成为全球健康的重大威胁,有可能导致疾病大面积爆发,造成严重的发病率和死亡率。预测未来真菌疾病的流行对于有效的防备和应对策略至关重要。本综合文献综述旨在全面分析有关这一主题的现有研究。通过对学术文章的广泛研究,本综述确定了未来有可能成为大流行病的潜在真菌病原体。它探讨了导致这些真菌疾病出现和传播的因素,包括气候变化、全球化和抗菌药耐药性。综述还讨论了诊断和治疗这些疾病所面临的挑战,包括获得诊断工具和抗真菌疗法的途径有限。此外,它还探讨了可用于减轻未来大流行真菌疾病影响的策略和干预措施,如改进监测系统、公共卫生教育和研究进展。本文献综述的研究结果有助于我们了解真菌疾病带来的潜在风险,并为公共卫生专业人员和政策制定者有效防备和应对未来大流行病的爆发提供了宝贵的见解。总之,本综述强调了采取积极措施和协同努力以预测和减轻未来大流行真菌疾病影响的重要性。
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引用次数: 0
Editorial: Mycoviruses of pathogenic fungi: the current research landscape 社论:病原真菌的霉菌病毒:当前的研究现状
Pub Date : 2024-04-12 DOI: 10.3389/ffunb.2024.1404961
Muhammad Faraz Bhatti, I. Kotta-Loizou, Robert H. A. Coutts
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引用次数: 0
Evaluation of phytoconstituents in marigold effluent for their antifungal activity against plant pathogens 评估万寿菊污水中的植物成分对植物病原体的抗真菌活性
Pub Date : 2024-04-04 DOI: 10.3389/ffunb.2024.1345543
Tulja Sanam, Umashankar Nagaraju, Benherlal P. S, S. G. Nerella, Jayaramaiah. R, K. G. G, Satya Srii. V
The current study placed an intense emphasis on the excess discharge of agro-based industrial effluent and the use of plant extract antimicrobials to inhibit the growth of pathogens in crop plants. An effluent (treated and untreated) from the marigold flower processing industry has been identified for the presence of volatile and semi-volatile organic compounds, and a total of 18 in treated effluent and 23 in untreated effluent were found using gas chromatography–mass spectrometry. A total of 13 classes were identified, which include carboxylic acid, phenols, esters, alkanes, alkenes, alcohols, cyanide, heterocyclic, flavonoids, aldehydes, polycyclic aromatic, cycloalkanes, and cycloalkenes. A principal component analysis with varimax rotation was applied to discern the abundance of identified compounds under each class. An in vitro antifungal bioassay was conducted using effluents at three different concentrations against plant pathogens (Alternaria alter nata, Sclerotium rolfsii, Rhizoctonia solani, Pythium aphanidermata, Fusarium oxysporum, and Colletotrichum gloeosporioides). The study proved that treated and untreated effluents clearly inhibited the growth of fungal pathogens by 10 to 32% and 37 to 92%, respectively. The findings suggest that marigold flower effluent can be a promising resource for developing new plant protection methods that are effective against pathogenic fungi.
目前的研究重点是农基工业废水的超量排放和使用植物提取物抗菌剂抑制作物中病原体的生长。利用气相色谱-质谱法对万寿菊花卉加工业的废水(经处理和未经处理)进行了挥发性和半挥发性有机化合物含量鉴定,发现经处理的废水中含有 18 种挥发性有机化合物,未经处理的废水中含有 23 种挥发性有机化合物。共鉴定出 13 类,包括羧酸、酚类、酯类、烷烃、烯烃、醇类、氰化物、杂环类、黄酮类、醛类、多环芳烃、环烷烃和环烯烃。采用主成分分析法和变异旋转法来确定每一类化合物的含量。使用三种不同浓度的污水对植物病原体(Alternaria alter nata、Sclerotium rolfsii、Rhizoctonia solani、Pythium aphanidermata、Fusarium oxysporum 和 Colletotrichum gloeosporioides)进行了体外抗真菌生物测定。研究证明,经过处理和未经处理的污水都能明显抑制真菌病原体的生长,抑制率分别为 10% 至 32% 和 37% 至 92%。研究结果表明,万寿菊花废水是一种很有前景的资源,可用于开发有效抑制病原真菌的新型植物保护方法。
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引用次数: 0
Arbuscular mycorrhizal fungal contribution towards plant resilience to drought conditions 丛枝菌根真菌对植物抗旱能力的贡献
Pub Date : 2024-02-16 DOI: 10.3389/ffunb.2024.1355999
Subhadeep Das, S. Sarkar
Climate changes cause altering rainfall patterns resulting in an increase in drought occurrences globally. These events are disrupting plants and agricultural productivity. To evade droughts, plants try to adapt and modify in the best capacities possible. The plants have adapted by structurally modifying roots, stems, and leaves, as well as modifying functions. Lately, the association of microbial communities with plants has also been proven to be an important factor in aiding resilience. The fungal representatives of the microbial community also help safeguard the plants against drought. We discuss how these fungi associate with plants and contribute to evading drought stress. We specifically focus on Arbuscular mycorrhizal fungi (AMF) mediated mechanisms involving antioxidant defenses, phytohormone mediations, osmotic adjustments, proline expressions, fungal water absorption and transport, morphological modifications, and photosynthesis. We believe understanding the mechanisms would help us to optimize the use of fungi in agricultural practices. That way we could better prepare the plants for the anticipated future drought events.
气候变化改变了降雨模式,导致全球干旱发生率上升。这些事件破坏了植物和农业生产。为了躲避干旱,植物试图尽可能地适应和改变。植物通过改变根、茎、叶的结构和功能来适应干旱。最近,微生物群落与植物的联系也被证明是帮助植物恢复能力的一个重要因素。微生物群落中的真菌代表还能帮助植物抵御干旱。我们将讨论这些真菌是如何与植物结合并帮助植物躲避干旱胁迫的。我们特别关注丛枝菌根真菌(AMF)介导的机制,包括抗氧化防御、植物激素介导、渗透调节、脯氨酸表达、真菌吸水和运输、形态改变和光合作用。我们相信,了解这些机制将有助于我们在农业实践中优化真菌的使用。这样,我们就能让植物更好地应对未来预期的干旱事件。
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引用次数: 0
Editorial: Emerging fungal pathogens: perspectives 社论:新出现的真菌病原体:展望
Pub Date : 2024-02-14 DOI: 10.3389/ffunb.2024.1369062
Danielly Corrêa-Moreira, Barbara de Oliveira Baptista, Domenico Giosa, Manoel Marques Evangelista Oliveira
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引用次数: 0
Editorial: Emerging fungal pathogens: perspectives 社论:新出现的真菌病原体:展望
Pub Date : 2024-02-14 DOI: 10.3389/ffunb.2024.1369062
Danielly Corrêa-Moreira, Barbara de Oliveira Baptista, Domenico Giosa, Manoel Marques Evangelista Oliveira
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引用次数: 0
期刊
Frontiers in Fungal Biology
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