Pub Date : 2024-07-26DOI: 10.1142/s0219720024500203
Zhou Yi, Minzhu Xie
{"title":"Polypharmacy side effect prediction based on semi-implicit graph variational auto-encoder","authors":"Zhou Yi, Minzhu Xie","doi":"10.1142/s0219720024500203","DOIUrl":"https://doi.org/10.1142/s0219720024500203","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"49 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141798709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.1142/s0219720024500197
Jia Gao, Yun Xu
{"title":"DNA sequences alignment method using sparse index on pan-genome graph","authors":"Jia Gao, Yun Xu","doi":"10.1142/s0219720024500197","DOIUrl":"https://doi.org/10.1142/s0219720024500197","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"37 24","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141800232","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-26DOI: 10.1142/s0219720024500215
Aikaterini G. Chatziargyri, Evangelia A. Stasi, Konstantinos I. Tsirigos, Zoi I. Litou, V. Iconomidou, P. Bagos
{"title":"CW-PRED: PREDICTION OF C-TERMINAL SURFACE ANCHORING SORTING SIGNALS IN BACTERIA AND ARCHAEA","authors":"Aikaterini G. Chatziargyri, Evangelia A. Stasi, Konstantinos I. Tsirigos, Zoi I. Litou, V. Iconomidou, P. Bagos","doi":"10.1142/s0219720024500215","DOIUrl":"https://doi.org/10.1142/s0219720024500215","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"2 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141801266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-07-05DOI: 10.1142/s0219720024500185
C. M. Salooja, Arjun Sanker, K. Deepthi, A. S. Jereesh
{"title":"An Ensemble approach for Circular RNA-Disease Association prediction using Variational Autoencoder and Genetic Algorithm","authors":"C. M. Salooja, Arjun Sanker, K. Deepthi, A. S. Jereesh","doi":"10.1142/s0219720024500185","DOIUrl":"https://doi.org/10.1142/s0219720024500185","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":" 43","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141675399","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Analyzing the performance of short read classification tools on metagenomic samples toward proper diagnosis of diseases","authors":"Leila Irankhah, Babak Khorsand, Mahmoud Naghibzadeh, Abdorreza Savadi","doi":"10.1142/s0219720024500124","DOIUrl":"https://doi.org/10.1142/s0219720024500124","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"57 51","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140965237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-05-17DOI: 10.1142/s0219720024500112
Alexander V. Spirov, Ekaterina M. Myasnikova, D. Holloway
{"title":"Body plan evolvability: the role of variability in gene regulatory networks","authors":"Alexander V. Spirov, Ekaterina M. Myasnikova, D. Holloway","doi":"10.1142/s0219720024500112","DOIUrl":"https://doi.org/10.1142/s0219720024500112","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"4 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140962715","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-22DOI: 10.1142/s0219720024500069
Chun Fang, Jiasheng He, Hayato Yamana
{"title":"MORF_ESM: Prediction of Morfs in Disordered Proteins Based on a Deep Transformer Protein Language Model","authors":"Chun Fang, Jiasheng He, Hayato Yamana","doi":"10.1142/s0219720024500069","DOIUrl":"https://doi.org/10.1142/s0219720024500069","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":" 12","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140215333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-03-08DOI: 10.1142/s0219720024500057
Rajiv Karbhal, Sangeeta Sawant, U. Kulkarni-Kale
{"title":"iCEED: Integrated Customized Extraction of Enzyme Data","authors":"Rajiv Karbhal, Sangeeta Sawant, U. Kulkarni-Kale","doi":"10.1142/s0219720024500057","DOIUrl":"https://doi.org/10.1142/s0219720024500057","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"16 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-03-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140257971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-02-16DOI: 10.1142/s0219720024500033
Seloua Hadiby, Yamina Mohamed Ben Ali
{"title":"Integrating Pharmacophore Model and Deep Learning for Activity Prediction of Molecules with BRCA1 Gene","authors":"Seloua Hadiby, Yamina Mohamed Ben Ali","doi":"10.1142/s0219720024500033","DOIUrl":"https://doi.org/10.1142/s0219720024500033","url":null,"abstract":"","PeriodicalId":509305,"journal":{"name":"Journal of Bioinformatics and Computational Biology","volume":"45 32","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139961594","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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