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The Emerging Potential of Advanced Targeted Mass Spectrometry to Become a Routine Tool for Protein Quantification in Biomedical Research. 先进的靶向质谱技术正在成为生物医学研究中蛋白质定量的常规工具。
Q4 Materials Science Pub Date : 2022-02-23 DOI: 10.2533/chimia.2022.81
Minia Antelo Varela, Alexander Schmidt

Mass spectrometry-based proteomics has become an indispensable tool for system-wide protein quantification in systems biology, biomedical research, and increasing for clinical applications. In particular, targeted mass spectrometry offers the most sensitive and reproducible quantitative detection of proteins, peptides and post-translational modifications of any currently applied mass spectrometry technique and is therefore ideally suited to generate high quality quantitative datasets. Despite these apparent advantages, targeted mass spectrometry is only slowly gaining popularity in academia and pharmaceutical industries, mainly due to the additional efforts in assay generation and manual data validation. However, with the increasing accumulation of mass spectrometry data, advances in deep learning spectral prediction for automated assay development, these obstacles can and will be considerably reduced in the near future. Here, we describe the latest technological developments in this field and discuss the emerging importance of targeted mass spectrometry for systems biology research and potential key roles in bridging biomedical discovery and clinical implementation.

基于质谱的蛋白质组学已经成为系统生物学、生物医学研究和越来越多的临床应用中全系统蛋白质定量的不可或缺的工具。特别是,靶向质谱法提供了目前应用的任何质谱技术中最敏感和可重复的蛋白质,肽和翻译后修饰的定量检测,因此非常适合生成高质量的定量数据集。尽管有这些明显的优势,但靶向质谱法在学术界和制药行业的普及速度很慢,这主要是由于在分析生成和手动数据验证方面的额外努力。然而,随着质谱数据的不断积累,自动化分析开发中深度学习光谱预测的进步,这些障碍可以并且将在不久的将来大大减少。在这里,我们描述了该领域的最新技术发展,并讨论了靶向质谱法在系统生物学研究中的重要性,以及在弥合生物医学发现和临床实施方面的潜在关键作用。
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引用次数: 0
Impact of Viral Status on Survival in Patients Receiving Sorafenib for Advanced Hepatocellular Cancer: A Meta-Analysis of Randomized Phase III Trials. 病毒状态对接受索拉非尼治疗的晚期肝细胞癌患者生存期的影响:随机III期试验的Meta分析。
IF 45.3 Q4 Materials Science Pub Date : 2017-02-20 Epub Date: 2017-01-03 DOI: 10.1200/JCO.2016.69.5197
Richard Jackson, Eftychia-Eirini Psarelli, Sarah Berhane, Harun Khan, Philip Johnson

Purpose Following the Sorafenib Hepatocellular Carcinoma Assessment Randomized Protocol (SHARP) trial, sorafenib has become the standard of care for patients with advanced unresectable hepatocellular carcinoma, but the relation between survival advantage and disease etiology remains unclear. To address this, we undertook an individual patient data meta-analysis of three large prospective randomized trials in which sorafenib was the control arm. Methods Of a total of 3,256 patients, 1,643 (50%) who received sorafenib were available. The primary end point was overall survival (OS). A Bayesian hierarchical approach for individual patient data meta-analyses was applied using a piecewise exponential model. Results are presented in terms of hazard ratios comparing sorafenib with alternative therapies according to hepatitis C virus (HCV) or hepatitis B virus (HBV) status. Results Hazard ratios show improved OS for sorafenib in patients who are both HBV negative and HCV positive (log [hazard ratio], -0.27; 95% CI, -0.46 to -0.06). Median unadjusted survival is 12.6 (11.15 to 13.8) months for sorafenib and 10.2 (8.88 to 12.2) months for "other" treatments in this subgroup. There was no evidence of improvement in OS for any other patient subgroups defined by HBV and HCV. Results were consistent across all trials with heterogeneity assessed using Cochran's Q statistic. Conclusion There is consistent evidence that the effect of sorafenib on OS is dependent on patients' hepatitis status. There is an improved OS for patients negative for HBV and positive for HCV when treated with sorafenib. There was no evidence of any improvement in OS attributable to sorafenib for patients positive for HBV and negative for HCV.

目的 继索拉非尼肝细胞癌评估随机方案(SHARP)试验之后,索拉非尼已成为晚期不可切除肝细胞癌患者的标准治疗方案,但生存优势与疾病病因之间的关系仍不清楚。为了解决这个问题,我们对三项大型前瞻性随机试验的患者个体数据进行了荟萃分析,其中索拉非尼是对照组。方法 在总共 3256 例患者中,有 1643 例(50%)接受了索拉非尼治疗。主要终点是总生存期(OS)。采用贝叶斯分层方法,使用片断指数模型对单个患者数据进行荟萃分析。根据丙型肝炎病毒(HCV)或乙型肝炎病毒(HBV)状态,索拉非尼与替代疗法的危险比比较结果。结果 危险比显示,HBV 阴性和 HCV 阳性患者的索拉非尼治疗可改善 OS(对数[危险比],-0.27;95% CI,-0.46 至 -0.06)。在该亚组中,索拉非尼的未调整生存期中位数为12.6(11.15至13.8)个月,"其他 "治疗的生存期中位数为10.2(8.88至12.2)个月。没有证据表明按HBV和HCV定义的其他患者亚组的OS有所改善。所有试验的结果一致,异质性采用 Cochran's Q 统计量进行评估。结论 有一致的证据表明,索拉非尼对 OS 的影响取决于患者的肝炎状态。接受索拉非尼治疗后,HBV 阴性和 HCV 阳性患者的 OS 均有所改善。没有证据表明索拉非尼可改善 HBV 阳性和 HCV 阴性患者的 OS。
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引用次数: 0
Preparation of Microencapsulated Bacillus subtilis SL-13 Seed Coating Agents and Their Effects on the Growth of Cotton Seedlings. 微囊化枯草芽孢杆菌SL-13种包衣剂的制备及其对棉花幼苗生长的影响。
Q4 Materials Science Pub Date : 2016-01-01 Epub Date: 2016-01-14 DOI: 10.1155/2016/3251357
Liang Tu, Yanhui He, Chunhui Shan, Zhansheng Wu

Inoculation of the bacterial cells of microbial seed coating agents (SCAs) into the environment may result in limited survival and colonization. Therefore, the application efficacy of an encapsulated microbial seed coating agent (ESCA) was investigated on potted cotton plants; the agent was prepared with polyvinyl alcohol, sodium dodecyl sulfate, bentonite, and microencapsulated Bacillus subtilis SL-13. Scanning electron micrography revealed that the microcapsules were attached to ESCA membranes. The ESCA film was uniform, bubble-free, and easy to peel. The bacterial contents of seeds coated with each ESCA treatment reached 10(6) cfu/seed. Results indicated that the germination rate of cotton seeds treated with ESCA4 (1.0% (w/v) sodium alginate, 4.0% polyvinyl alcohol, 1.0% sodium dodecyl sulfate, 0.6% acacia, 0.5% bentonite, and 10% (v/v) microcapsules) increased by 28.74%. Other growth factors of the cotton seedlings, such as plant height, root length, whole plant fresh weight, and whole plant dry weight, increased by 52.70%, 25.13%, 46.47%, and 33.21%, respectively. Further analysis demonstrated that the peroxidase and superoxide dismutase activities of cotton seedlings improved, whereas their malondialdehyde contents decreased. Therefore, the ESCA can efficiently improve seed germination, root length, and growth. The proposed ESCA exhibits great potential as an alternative to traditional SCA in future agricultural applications.

微生物包衣剂(SCAs)的细菌细胞接种到环境中可能导致有限的生存和定植。为此,研究了包封型微生物包衣剂(ESCA)在棉花盆栽上的应用效果;以聚乙烯醇、十二烷基硫酸钠、膨润土和微囊化枯草芽孢杆菌SL-13为原料制备该剂。扫描电镜显示微胶囊附着在ESCA膜上。ESCA膜均匀,无气泡,易剥离。经ESCA包衣处理的种子细菌含量均达到10(6)cfu/粒。结果表明,ESCA4 (1.0% (w/v)海藻酸钠、4.0%聚乙烯醇、1.0%十二烷基硫酸钠、0.6%金合木、0.5%膨润土和10% (v/v)微胶囊)处理棉花种子的发芽率提高了28.74%。棉花幼苗的株高、根长、全株鲜重和全株干重等生长因子分别提高了52.70%、25.13%、46.47%和33.21%。进一步分析表明,棉花幼苗的过氧化物酶和超氧化物歧化酶活性提高,丙二醛含量降低。因此,ESCA能有效地促进种子萌发、根长和生长。提议的ESCA在未来的农业应用中作为传统SCA的替代方案显示出巨大的潜力。
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引用次数: 30
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Cailiao Yanjiu Xuebao/Chinese Journal of Materials Research
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