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Severe acute respiratory syndrome (SARS) related coronavirus in bats. 蝙蝠中与严重急性呼吸综合征(SARS)相关的冠状病毒。
Pub Date : 2021-01-01 Epub Date: 2021-04-23 DOI: 10.1186/s44149-021-00004-w
Rong Geng, Peng Zhou

Three major human coronavirus disease outbreaks, severe acute respiratory syndrome (SARS), Middle East respiratory syndrome (MERS) and 2019 coronavirus disease (COVID-19), occurred in the twenty-first century and were caused by different coronaviruses (CoVs). All these viruses are considered to have originated from bats and transmitted to humans through intermediate hosts. SARS-CoV-1 and SARS-CoV-2, disease agent of COVID-19, shared around 80% genomic similarity, and thus belong to SARS-related CoVs. As a natural reservoir of viruses, bats harbor numerous other SARS-related CoVs that could potentially infect humans around the world, causing SARS or COVID-19 like outbreaks in the future. In this review, we summarized the current knowledge of CoVs on geographical distribution, genetic diversity, cross-species transmission potential and possible pathogenesis in humans, aiming for a better understanding of bat SARS-related CoVs in the context of prevention and control.

严重急性呼吸系统综合征(SARS)、中东呼吸综合征(MERS)和2019冠状病毒病(COVID-19)三次重大人类冠状病毒病暴发发生在21世纪,由不同的冠状病毒(cov)引起。所有这些病毒都被认为起源于蝙蝠,并通过中间宿主传播给人类。COVID-19的致病因子SARS-CoV-1和SARS-CoV-2的基因组相似性约为80%,因此属于sars相关冠状病毒。作为病毒的天然储存库,蝙蝠携带着许多其他与SARS相关的冠状病毒,这些冠状病毒可能会感染世界各地的人类,在未来引发SARS或COVID-19之类的疫情。本文就冠状病毒在人类中的地理分布、遗传多样性、跨种传播潜力和可能的发病机制等方面的研究进展进行综述,以期在预防和控制蝙蝠sars相关冠状病毒方面有更好的认识。
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引用次数: 3
Prediction of SARS-CoV-2 hosts among Brazilian mammals and new coronavirus transmission chain using evolutionary bioinformatics. 利用进化生物信息学预测巴西哺乳动物中SARS-CoV-2宿主和新型冠状病毒传播链
Pub Date : 2021-01-01 Epub Date: 2021-09-26 DOI: 10.1186/s44149-021-00020-w
Luciano Rodrigo Lopes, Giancarlo de Mattos Cardillo, Natália Carvalho de Lucca Pina, Antonio Carlos da Silva Junior, Silvana Kertzer Kasinski, Paulo Bandiera-Paiva

Severe acute respiratory syndrome coronavirus (SARS-CoV) and SARS-CoV-2 are thought to transmit to humans via wild mammals, especially bats. However, evidence for direct bat-to-human transmission is lacking. Involvement of intermediate hosts is considered a reason for SARS-CoV-2 transmission to humans and emergence of outbreak. Large biodiversity is found in tropical territories, such as Brazil. On the similar line, this study aimed to predict potential coronavirus hosts among Brazilian wild mammals based on angiotensin-converting enzyme 2 (ACE2) sequences using evolutionary bioinformatics. Cougar, maned wolf, and bush dogs were predicted as potential hosts for coronavirus. These indigenous carnivores are philogenetically closer to the known SARS-CoV/SARS-CoV-2 hosts and presented low ACE2 divergence. A new coronavirus transmission chain was developed in which white-tailed deer, a susceptible SARS-CoV-2 host, have the central position. Cougar play an important role because of its low divergent ACE2 level in deer and humans. The discovery of these potential coronavirus hosts will be useful for epidemiological surveillance and discovery of interventions that can contribute to break the transmission chain.

Supplementary information: The online version contains supplementary material available at 10.1186/s44149-021-00020-w.

严重急性呼吸综合征冠状病毒(SARS-CoV)和SARS-CoV-2被认为是通过野生哺乳动物,特别是蝙蝠传播给人类的。然而,缺乏蝙蝠与人类直接传播的证据。中间宿主的参与被认为是SARS-CoV-2传播给人类和出现疫情的一个原因。在巴西等热带地区发现了大量的生物多样性。同样,本研究旨在利用进化生物信息学技术,基于血管紧张素转换酶2 (ACE2)序列,预测巴西野生哺乳动物中潜在的冠状病毒宿主。美洲狮、鬃狼和丛林犬被预测为冠状病毒的潜在宿主。这些本土食肉动物在基因学上更接近已知的SARS-CoV/SARS-CoV-2宿主,并且ACE2分化程度较低。以SARS-CoV-2易感宿主白尾鹿为中心的新型冠状病毒传播链已经形成。美洲狮在鹿和人类中具有较低的ACE2分化水平,因此发挥了重要作用。发现这些潜在的冠状病毒宿主将有助于流行病学监测和发现有助于打破传播链的干预措施。补充信息:在线版本包含补充信息,获取地址:10.1186/s44149-021-00020-w。
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引用次数: 1
Roles of bile acids in enteric virus replication. 胆汁酸在肠道病毒复制中的作用。
Pub Date : 2021-01-01 Epub Date: 2021-04-23 DOI: 10.1186/s44149-021-00003-x
Fanzhi Kong, Linda J Saif, Qiuhong Wang

Bile acids (BAs) are evolutionally conserved molecules synthesized in the liver from cholesterol to facilitating the absorption of fat-soluble nutrients. In the intestines, where enteric viruses replicate, BAs also act as signaling molecules that modulate various biological functions via activation of specific receptors and cell signaling pathways. To date, BAs present either pro-viral or anti-viral effects for the replication of enteric viruses in vivo and in vitro. In this review, we summarized current information on biosynthesis, transportation and metabolism of BAs and the role of BAs in replication of enteric caliciviruses, rotaviruses, and coronaviruses. We also discussed the application of BAs for cell culture adaptation of fastidious enteric caliciviruses and control of virus infection, which may provide novel insights into the development of antivirals and/or disinfectants for enteric viruses.

胆汁酸(BAs)是在肝脏中由胆固醇合成的进化保守分子,促进脂溶性营养物质的吸收。在肠道病毒复制的地方,BAs也作为信号分子,通过激活特定受体和细胞信号通路来调节各种生物功能。迄今为止,ba在体内和体外对肠道病毒的复制表现出抗病毒或抗病毒的作用。在这篇综述中,我们对BAs的生物合成、运输和代谢以及BAs在肠杯状病毒、轮状病毒和冠状病毒复制中的作用进行了综述。我们还讨论了ba在精细肠道杯状病毒的细胞培养适应和病毒感染控制中的应用,这可能为肠道病毒抗病毒和/或消毒剂的开发提供新的见解。
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引用次数: 8
The taxonomy, host range and pathogenicity of coronaviruses and other viruses in the Nidovirales order. 冠状病毒和其他尼多病毒目病毒的分类、宿主范围和致病性。
Pub Date : 2021-01-01 Epub Date: 2021-04-23 DOI: 10.1186/s44149-021-00005-9
Zhijian Zhou, Ye Qiu, Xingyi Ge

The frequent emergence of coronavirus (CoV) epidemics has seriously threatened public health and stock farming. The major hosts for CoVs are birds and mammals. Although most CoVs inhabit their specific natural hosts, some may occasionally cross the host barrier to infect livestock and even people, causing a variety of diseases. Since the beginning of the new century, increasing attention has been given to research on CoVs due to the emergence of highly pathogenic and genetically diverse CoVs that have caused several epidemics, including the recent COVID-19 pandemic. CoVs belong to the Coronaviridae family of the Nidovirales order. Recently, advanced techniques for viral detection and viral genome analyses have enabled characterization of many new nidoviruses than ever and have greatly expanded the Nidovirales order with new classification and nomenclature. Here, we first provide an overview of the latest research progress in the classification of the Nidovirales order and then introduce the host range, genetic variation, genomic pattern and pathogenic features of epidemic CoVs and other epidemic viruses. This information will promote understanding of the phylogenetic relationship and infectious transmission of various pathogenic nidoviruses, including epidemic CoVs, which will benefit virological research and viral disease control.

冠状病毒(CoV)疫情的频繁出现严重威胁着公众健康和畜牧业。冠状病毒的主要宿主是鸟类和哺乳动物。虽然大多数冠状病毒居住在其特定的自然宿主中,但有些冠状病毒偶尔会越过宿主屏障感染牲畜甚至人,引起各种疾病。进入新世纪以来,由于高致病性和遗传多样性的冠状病毒的出现,导致了包括最近的COVID-19大流行在内的几次流行病,冠状病毒的研究日益受到重视。冠状病毒属于尼多病毒目冠状病毒科。最近,先进的病毒检测和病毒基因组分析技术使许多新的尼多病毒的特征比以往任何时候都要多,并通过新的分类和命名法大大扩展了尼多病毒目。本文首先综述了Nidovirales分类的最新研究进展,然后介绍了新型冠状病毒和其他流行病毒的宿主范围、遗传变异、基因组模式和致病特征。这些信息将促进对包括流行性冠状病毒在内的各种致病性尼多病毒的系统发育关系和感染传播的理解,这将有利于病毒学研究和病毒性疾病控制。
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引用次数: 61
The epidemiology of swine influenza. 猪流感的流行病学。
Pub Date : 2021-01-01 Epub Date: 2021-09-28 DOI: 10.1186/s44149-021-00024-6
Yin Li, Ian Robertson

Globally swine influenza is one of the most important diseases of the pig industry, with various subtypes of swine influenza virus co-circulating in the field. Swine influenza can not only cause large economic losses for the pig industry but can also lead to epidemics or pandemics in the human population. We provide an overview of the pathogenic characteristics of the disease, diagnosis, risk factors for the occurrence on pig farms, impact on pigs and humans and methods to control it. This review is designed to promote understanding of the epidemiology of swine influenza which will benefit the control of the disease in both pigs and humans.

猪流感是全球养猪业最重要的疾病之一,不同亚型的猪流感病毒在猪场中共同流行。猪流感不仅会给养猪业造成巨大的经济损失,而且还会在人群中导致流行病或大流行。本文综述了该病的病原特征、诊断、猪场发生的危险因素、对猪和人的影响以及控制方法。这篇综述的目的是促进对猪流感流行病学的了解,这将有利于猪和人的疾病控制。
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引用次数: 9
Review of sheep and goat pox disease: current updates on epidemiology, diagnosis, prevention and control measures in Ethiopia. 绵羊和山羊痘病审查:埃塞俄比亚流行病学、诊断、预防和控制措施的最新情况。
Pub Date : 2021-01-01 Epub Date: 2021-11-15 DOI: 10.1186/s44149-021-00028-2
Girma Zewdie, Getaw Derese, Belayneh Getachew, Hassen Belay, Mirtneh Akalu

Sheep pox, goat pox, and lumpy skin diseases are economically significant and contagious viral diseases of sheep, goats and cattle, respectively, caused by the genus Capripoxvirus (CaPV) of the family Poxviridae. Currently, CaPV infection of small ruminants (sheep and goats) has been distributed widely and are prevalent in Central Africa, the Middle East, Europe and Asia. This disease poses challenges to food production and distribution, affecting rural livelihoods in most African countries, including Ethiopia. Transmission occurs mainly by direct or indirect contact with infected animals. They cause high morbidity (75-100% in endemic areas) and mortality (10-85%). Additionally, the mortality rate can approach 100% in susceptible animals. Diagnosis largely relies on clinical symptoms, confirmed by laboratory testing using real-time PCR, electron microscopy, virus isolation, serology and histology. Control and eradication of sheep pox virus (SPPV), goat pox virus (GTPV), and lumpy skin disease (LSDV) depend on timely recognition of disease eruption, vector control, and movement restriction. To date, attenuated vaccines originating from KSGPV O-180 strains are effective and widely used in Ethiopia to control CaPV throughout the country. This vaccine strain is clinically safe to control CaPV in small ruminants but not in cattle which may be associated with insufficient vaccination coverage and the production of low-quality vaccines.

绵羊痘、山羊痘和疙瘩皮肤病是由痘病毒科的CaPV属(CaPV)引起的绵羊、山羊和牛的具有经济意义和传染性的病毒性疾病。目前,小反刍动物(绵羊和山羊)的CaPV感染分布广泛,在中非、中东、欧洲和亚洲流行。这种疾病对粮食生产和分配构成挑战,影响到包括埃塞俄比亚在内的大多数非洲国家的农村生计。传播主要通过与受感染动物的直接或间接接触发生。它们造成高发病率(流行地区75-100%)和高死亡率(10-85%)。此外,易感动物的死亡率可接近100%。诊断在很大程度上依赖于临床症状,通过实时PCR、电子显微镜、病毒分离、血清学和组织学的实验室检测来证实。控制和根除羊痘病毒(SPPV)、山羊痘病毒(GTPV)和肿块性皮肤病(LSDV)取决于及时识别疾病爆发、媒介控制和限制运动。迄今为止,产自KSGPV O-180毒株的减毒疫苗是有效的,并在埃塞俄比亚广泛使用,以在全国范围内控制CaPV。该疫苗株在临床上对控制小反刍动物的CaPV是安全的,但在牛中却不安全,这可能与疫苗接种覆盖率不足和低质量疫苗的生产有关。
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引用次数: 7
Pasteurella multocida capsular: lipopolysaccharide types D:L6 and A:L3 remain to be the main epidemic genotypes of pigs in China. 多杀性巴氏杆菌荚膜脂多糖D:L6型和A:L3型仍是中国猪的主要流行基因型。
Pub Date : 2021-01-01 Epub Date: 2021-11-02 DOI: 10.1186/s44149-021-00031-7
Songtao Liu, Lin Lin, Hao Yang, Wenqing Wu, Long Guo, Yue Zhang, Fei Wang, Xueying Wang, Wenbo Song, Lin Hua, Wan Liang, Xibiao Tang, Huanchun Chen, Zhong Peng, Bin Wu

Pasteurella multocida is a leading cause of respiratory disorders in pigs. This study was designed to understand the genotypical and antimicrobial resistant characteristics of P. multocida from pigs in China. To achieve this, we briefly investigated 158 P. multocida isolates from pigs with respiratory disorders in China between 2019 and 2020. Genotyping through multiplex PCR assays assigned these 158 isolates into capsular genotypes A (60.13%, 95/158), D (35.44%, 56/158), F (4.43%, 7/158), and/or lipopolysaccharide (LPS) genotypes L3 (28.48%, 45/158) and L6 (66.46%, 105/158). In addition, eight isolates (5.06%, 8/158) were found to be nontypable using the LPS genotyping method. When combining the capsular genotypes and the LPS genotypes, D: L6 (34.81%, 55/158) and A: L6 (31.65%, 50/158) were the predominant genotypes, followed by A: L3 (24.05%, 38/158). PCR detection of virulence factor-encoding genes showed that over 80% of the isolates were positive for exbB, tonB, exbD, ompH, ptfA, fimA, sodA, sodC, fur, ompA, oma87, plpB, hsf-2, nanH and hgbB, suggesting the presence of these genes were broad characteristics of P. multocida. We also found approximately 63.92% (101/158), 51.27% (81/158), 8.86% (14/158), 7.59% (12/158), 3.16% (5/158), 0.63% (1/158), and 0.63% (1/158) of the isolates grew well in media with the presence of colistin (4 μg/mL), tetracycline (16 μg/mL), tigecycline (1 μg/mL), ampicillin (32 μg/mL), chloramphenicol (32 μg/mL), cefepime (16 μg/mL), and ciprofloxacin (1 μg/mL), respectively. This study contributes to the understanding of genotypes and antimicrobial resistance profile of P. multocida currently circulation in pigs of China.

Supplementary information: The online version contains supplementary material available at 10.1186/s44149-021-00031-7.

多杀性巴氏杆菌是猪呼吸系统疾病的主要病因。本研究旨在了解中国猪源多杀假单胞菌的基因型和耐药特征。为了实现这一目标,我们在2019年至2020年期间简要调查了158株来自中国呼吸系统疾病猪的多杀假单胞菌。通过多重PCR分型将158株分离菌株分为荚膜基因型A(60.13%, 95/158)、D(35.44%, 56/158)、F(4.43%, 7/158)和脂多糖(LPS)基因型L3(28.48%, 45/158)和L6(66.46%, 105/158)。另外,有8株(5.06%,8/158)采用LPS基因分型方法无法分型。将荚膜基因型与LPS基因型组合时,优势基因型为D: L6(34.81%, 55/158)和A: L6(31.65%, 50/158),其次为A: L3(24.05%, 38/158)。毒力因子编码基因PCR检测结果显示,超过80%的菌株exbB、tonB、exbD、ompH、ptfA、fimA、sodA、sodC、fur、ompA、oma87、plpB、hsf-2、nanH和hgbB阳性,表明这些基因的存在是多杀性假单胞菌的广泛特征。分别有63.92%(101/158)、51.27%(81/158)、8.86%(14/158)、7.59%(12/158)、3.16%(5/158)、0.63%(1/158)和0.63%(1/158)的菌株在含有粘菌素(4 μg/mL)、四环素(16 μg/mL)、替加环素(1 μg/mL)、氨苄西林(32 μg/mL)、氯霉素(32 μg/mL)、头孢吡肟(16 μg/mL)和环丙沙星(1 μg/mL)的培养基中生长良好。本研究有助于了解目前在中国流行的多杀假单胞菌的基因型和耐药谱。补充资料:在线版本提供补充资料,网址为10.1186/s44149-021-00031-7。
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引用次数: 5
Launching Animal Diseases: animal warfare and health, food safety, and public health. 推出动物疾病:动物战争与健康、食品安全和公共卫生。
Pub Date : 2021-01-01 Epub Date: 2021-04-23 DOI: 10.1186/s44149-021-00006-8
Zhen F Fu, Huanchun Chen
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引用次数: 0
The nucleoside antiviral prodrug remdesivir in treating COVID-19 and beyond with interspecies significance. 核苷类抗病毒前药瑞德西韦治疗COVID-19及其他疾病具有种间意义。
Pub Date : 2021-01-01 Epub Date: 2021-09-07 DOI: 10.1186/s44149-021-00017-5
Daisy Yan, One Hyuk Ra, Bingfang Yan

Infectious pandemics result in hundreds and millions of deaths, notable examples of the Spanish Flu, the Black Death and smallpox. The current pandemic, caused by SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), is unprecedented even in the historical term of pandemics. The unprecedentedness is featured by multiple surges, rapid identification of therapeutic options and accelerated development of vaccines. Remdesivir, originally developed for Ebola viral disease, is the first treatment of COVID-19 (Coronavirus disease 2019) approved by the United States Food and Drug Administration. As demonstrated by in vitro and preclinical studies, this therapeutic agent is highly potent with a broad spectrum activity against viruses from as many as seven families even cross species. However, randomized controlled trials have failed to confirm the efficacy and safety. Remdesivir improves some clinical signs but not critical parameters such as mortality. This antiviral agent is an ester/phosphorylation prodrug and excessive hydrolysis which increases cellular toxicity. Remdesivir is given intravenously, leading to concentration spikes and likely increasing the potential of hydrolysis-based toxicity. This review has proposed a conceptual framework for improving its efficacy and minimizing toxicity not only for the COVID-19 pandemic but also for future ones caused by remdesivir-sensitive viruses.

传染病导致数亿人死亡,著名的例子是西班牙流感、黑死病和天花。当前由SARS-CoV-2(严重急性呼吸综合征冠状病毒2)引起的大流行,即使在大流行的历史上也是前所未有的。前所未有的特点是多次激增,快速确定治疗选择和加速开发疫苗。最初为埃博拉病毒病开发的Remdesivir是美国食品和药物管理局(fda)批准的首个治疗COVID-19(冠状病毒病2019)的药物。体外和临床前研究表明,该治疗剂对7个科甚至跨物种的病毒具有广谱活性。然而,随机对照试验未能证实其有效性和安全性。瑞德西韦改善了一些临床症状,但没有改善关键参数,如死亡率。这种抗病毒药物是一种酯/磷酸化前药,过度水解会增加细胞毒性。瑞德西韦是静脉注射,导致浓度峰值,并可能增加潜在的水解毒性。本综述提出了一个概念性框架,不仅可以用于COVID-19大流行,还可以用于未来由瑞德西韦敏感病毒引起的大流行,以提高其疗效并最小化毒性。
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引用次数: 4
Identification and phylogenetic analysis of two canine coronavirus strains. 两株犬冠状病毒的鉴定及系统发育分析。
Pub Date : 2021-01-01 Epub Date: 2021-07-19 DOI: 10.1186/s44149-021-00013-9
Junji Gan, Ye Tang, Haifeng Lv, Wenbin Xiong, Xiaoyan Tian

Canine coronavirus (CCoV), a member of the genus Alphacoronavirus, is an enveloped, single-stranded positive-sense RNA virus that responsible for gastroenteritis in dogs. In this study, two CCoV isolates were successfully propagated from 53 CCoV-positive clinical specimens by serial passaging in A-72 cells. These two strains, CCoV JS1706 and CCoV JS1712, caused cytopathic effects in A-72 cells. The sizes of virus plaque formed by them differed in early passages. Electron microscopy revealed a large quantity of typical coronavirus particles with 80-120 nm in diameter in cell culture media and cytoplasm of infected cells, in which they appeared as inclusion bodies. RT-PCR analysis of S gene indicated that these two isolates were belonged to CCoV IIa subtype. Homology of RdRp, S, M and N proteins between the two strains were 100, 99.6, 99.2 and 100.0%, respectively, whereas they were 99.4-100%, 83.1-95.2%, 88.5-99.2% and 91.9-99.7% identity compared to CCoV II reference strains. Phylogenetic analysis of RdRp, S, M and N protein showed that they were closely related to CCoV II strains. These two subtype IIa isolates will be useful for evaluating the pathogenesis and evolution of CCoV and for developing diagnostic reagents and vaccines.

犬冠状病毒(CCoV)是一种包膜单链正义RNA病毒,是引起犬肠胃炎的主要原因。本研究通过A-72细胞的连续传代,成功地从53份CCoV阳性临床标本中分离出2株CCoV。CCoV JS1706和CCoV JS1712在A-72细胞中引起细胞病变。它们在早期传代时形成的病毒空斑大小不同。电镜观察发现,在感染细胞的细胞培养基和细胞质中存在大量直径80 ~ 120nm的典型冠状病毒颗粒,颗粒中以包涵体的形式出现。S基因的RT-PCR分析表明,这两株分离株均为冠状病毒IIa亚型。两株RdRp、S、M和N蛋白的同源性分别为100、99.6、99.2和100.0%,而与参考株的同源性分别为99.4-100%、83.1-95.2%、88.5-99.2%和91.9-99.7%。RdRp、S、M和N蛋白的系统发育分析表明,它们与cov II型亲缘关系密切。这两种IIa亚型分离株将有助于评估冠状病毒的发病机制和演变以及开发诊断试剂和疫苗。
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引用次数: 1
期刊
动物疾病(英文)
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