首页 > 最新文献

Annals of gerontology and geriatric research最新文献

英文 中文
Coordinated Action of Biological Processes during Embryogenesis Can Cause Genome-Wide Linkage Disequilibrium in the Human Genome and Influence Age-Related Phenotypes. 胚胎发生过程中生物过程的协调作用可导致人类基因组的全基因组连锁失衡,并影响与年龄相关的表型。
Pub Date : 2016-01-01 Epub Date: 2016-05-04
Irina Culminskaya, Alexander M Kulminski, Anatoli I Yashin

A role of non-Mendelian inheritance in genetics of complex, age-related traits is becoming increasingly recognized. Recently, we reported on two inheritable clusters of SNPs in extensive genome-wide linkage disequilibrium (LD) in the Framingham Heart Study (FHS), which were associated with the phenotype of premature death. Here we address biologically-related properties of these two clusters. These clusters have been unlikely selected randomly because they are functionally and structurally different from matched sets of randomly selected SNPs. For example, SNPs in LD from each cluster are highly significantly enriched in genes (p=7.1×10-22 and p=5.8×10-18), in general, and in short genes (p=1.4×10-47 and p=4.6×10-7), in particular. Mapping of SNPs in LD to genes resulted in two, partly overlapping, networks of 1764 and 4806 genes. Both these networks were gene enriched in developmental processes and in biological processes tightly linked with development including biological adhesion, cellular component organization, locomotion, localization, signaling, (p<10-4, q<10-4 for each category). Thorough analysis suggests connections of these genetic networks with different stages of embryogenesis and highlights biological interlink of specific processes enriched for genes from these networks. The results suggest that coordinated action of biological processes during embryogenesis may generate genome-wide networks of genetic variants, which may influence complex age-related phenotypes characterizing health span and lifespan.

人们越来越认识到非孟德尔遗传在复杂的、与年龄相关的性状遗传学中的作用。最近,我们报告了在弗雷明汉心脏研究(FHS)中发现的两个具有广泛全基因组连锁不平衡(LD)的可遗传 SNPs 簇,它们与过早死亡的表型有关。在此,我们探讨了这两个基因簇的生物学相关特性。这些群组不太可能是随机选择的,因为它们在功能和结构上与随机选择的 SNP 匹配集不同。例如,一般来说,每个簇中的 LD SNPs 在基因(p=7.1×10-22 和 p=5.8×10-18)中高度显著富集,尤其是在短基因(p=1.4×10-47 和 p=4.6×10-7)中。将LD中的SNP映射到基因后,形成了两个部分重叠的网络,分别包含1764个和4806个基因。这两个网络的基因都富集在发育过程和与发育密切相关的生物过程中,包括生物粘附、细胞成分组织、运动、定位、信号转导等(每个类别的 p-4、q-4)。透彻的分析表明,这些基因网络与胚胎发生的不同阶段存在联系,并突出了这些网络中基因所富集的特定过程之间的生物学联系。研究结果表明,胚胎发生过程中生物过程的协调作用可能会产生全基因组范围的遗传变异网络,而这些网络可能会影响复杂的年龄相关表型,从而影响健康寿命和寿命的特征。
{"title":"Coordinated Action of Biological Processes during Embryogenesis Can Cause Genome-Wide Linkage Disequilibrium in the Human Genome and Influence Age-Related Phenotypes.","authors":"Irina Culminskaya, Alexander M Kulminski, Anatoli I Yashin","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>A role of non-Mendelian inheritance in genetics of complex, age-related traits is becoming increasingly recognized. Recently, we reported on two inheritable clusters of SNPs in extensive genome-wide linkage disequilibrium (LD) in the Framingham Heart Study (FHS), which were associated with the phenotype of premature death. Here we address biologically-related properties of these two clusters. These clusters have been unlikely selected randomly because they are functionally and structurally different from matched sets of randomly selected SNPs. For example, SNPs in LD from each cluster are highly significantly enriched in genes (p=7.1×10<sup>-22</sup> and p=5.8×10<sup>-18</sup>), in general, and in short genes (p=1.4×10<sup>-47</sup> and p=4.6×10<sup>-7</sup>), in particular. Mapping of SNPs in LD to genes resulted in two, partly overlapping, networks of 1764 and 4806 genes. Both these networks were gene enriched in developmental processes and in biological processes tightly linked with development including biological adhesion, cellular component organization<i>,</i> locomotion, localization, signaling, (p<10<sup>-4</sup>, q<10<sup>-4</sup> for each category). Thorough analysis suggests connections of these genetic networks with different stages of embryogenesis and highlights biological interlink of <i>specific</i> processes enriched for genes from these networks. The results suggest that coordinated action of biological processes during embryogenesis may generate genome-wide networks of genetic variants, which may influence complex age-related phenotypes characterizing health span and lifespan.</p>","PeriodicalId":72218,"journal":{"name":"Annals of gerontology and geriatric research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2016-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5367637/pdf/nihms850301.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"34867931","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Trends in Long-Term Acute Care Hospital Use in Texas from 2002-2011. 2002-2011年德克萨斯州长期急性护理医院使用趋势。
Anil N Makam, Oanh K Nguyen, Jie Zhou, Kenneth J Ottenbacher, Ethan A Halm

Objective: To assess regional trends in long-term acute care hospital (LTAC) use over time.

Design setting participants: Retrospective study using 100% Texas Medicare data. Separate cohorts were created for each year from 2002-2011, which included all beneficiaries residing in 23 hospital referral regions (HRRs) with continuous enrollment in Parts A and B in the previous and current year, or until death.

Measurements: LTAC utilization rate was defined as the number of individuals with a LTAC stay per 100,000 Medicare beneficiaries residing in the HRR. Baseline LTAC use at the HRR-level was categorized by tertiles of use in 2002.

Results: Overall, LTAC use increased 35% from 2002-2011 and coincided with major Medicare policy changes. However, there were marked regional differences in LTAC utilization trends. From 2002-2011, HRRs in the lowest tertile of baseline LTAC use, which included regions with 0 to 1 LTAC facilities in 2002, had an increase in utilization by 211%, from 190 to 591 individuals per 100,000 persons. In contrast, HRRs in the highest tertile of baseline LTAC use, which included some of the most densely LTAC-bedded regions in the country, experienced a 21% decline (915 to 719 individuals per 100,000 persons; p<0.001 for interaction of LTAC utilization and tertile of baseline use).

Conclusion: These findings suggest substantial regional variation in the trends in LTAC use over time. Further research is needed to estimate how much of this variation is due to differences in clinical need due to increasing number of severely ill older adults versus regional market supply.

目的:评估长期急症护理医院(LTAC)使用的区域趋势。设计设置参与者:回顾性研究,使用100%德州医疗保险数据。2002-2011年每年建立单独的队列,其中包括居住在23个医院转诊区(hrr)的所有受益人,这些受益人在上一年和当年连续在A部分和B部分登记,或直到死亡。测量:LTAC使用率被定义为每10万名居住在HRR的医疗保险受益人中使用LTAC的人数。2002年,在hrr水平上的基线LTAC使用情况按使用类型分类。结果:总体而言,LTAC的使用从2002-2011年增加了35%,与主要的医疗保险政策变化相吻合。然而,在lttac的利用趋势方面存在着显著的区域差异。从2002年到2011年,基线LTAC使用最低分位数(包括2002年拥有0至1个LTAC设施的地区)的hrr利用率增加了211%,从每10万人190人增加到591人。相比之下,基线LTAC使用的最高分位数(包括该国一些LTAC最密集的地区)的hrr下降了21%(每10万人915至719人;结论:这些发现表明,随着时间的推移,LTAC的使用趋势存在显著的区域差异。需要进一步的研究来估计这种差异在多大程度上是由于临床需求与区域市场供应的差异造成的,而临床需求是由于重症老年人数量的增加。
{"title":"Trends in Long-Term Acute Care Hospital Use in Texas from 2002-2011.","authors":"Anil N Makam,&nbsp;Oanh K Nguyen,&nbsp;Jie Zhou,&nbsp;Kenneth J Ottenbacher,&nbsp;Ethan A Halm","doi":"","DOIUrl":"","url":null,"abstract":"<p><strong>Objective: </strong>To assess regional trends in long-term acute care hospital (LTAC) use over time.</p><p><strong>Design setting participants: </strong>Retrospective study using 100% Texas Medicare data. Separate cohorts were created for each year from 2002-2011, which included all beneficiaries residing in 23 hospital referral regions (HRRs) with continuous enrollment in Parts A and B in the previous and current year, or until death.</p><p><strong>Measurements: </strong>LTAC utilization rate was defined as the number of individuals with a LTAC stay per 100,000 Medicare beneficiaries residing in the HRR. Baseline LTAC use at the HRR-level was categorized by tertiles of use in 2002.</p><p><strong>Results: </strong>Overall, LTAC use increased 35% from 2002-2011 and coincided with major Medicare policy changes. However, there were marked regional differences in LTAC utilization trends. From 2002-2011, HRRs in the lowest tertile of baseline LTAC use, which included regions with 0 to 1 LTAC facilities in 2002, had an increase in utilization by 211%, from 190 to 591 individuals per 100,000 persons. In contrast, HRRs in the highest tertile of baseline LTAC use, which included some of the most densely LTAC-bedded regions in the country, experienced a 21% decline (915 to 719 individuals per 100,000 persons; p<0.001 for interaction of LTAC utilization and tertile of baseline use).</p><p><strong>Conclusion: </strong>These findings suggest substantial regional variation in the trends in LTAC use over time. Further research is needed to estimate how much of this variation is due to differences in clinical need due to increasing number of severely ill older adults versus regional market supply.</p>","PeriodicalId":72218,"journal":{"name":"Annals of gerontology and geriatric research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4686275/pdf/nihms733409.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10242580","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genetic Structures of Population Cohorts Change with Increasing Age: Implications for Genetic Analyses of Human aging and Life Span. 人口队列遗传结构随年龄增长而变化:人类衰老和寿命遗传分析的意义。
Anatoliy I Yashin, Deqing Wu, Konstantin G Arbeev, Liubov S Arbeeva, Igor Akushevich, Alexander Kulminski, Irina Culminskaya, Eric Stallard, Svetlana V Ukraintseva

Background: Correcting for the potential effects of population stratification is an important issue in genome wide association studies (GWAS) of complex traits. Principal component analysis (PCA) of the genetic structure of the population under study with subsequent incorporation of the first several principal components (PCs) in the GWAS regression model is often used for this purpose.

Problem: For longevity related traits such a correction may negatively affect the accuracy of genetic analyses. This is because PCs may capture genetic structure induced by mortality selection processes in genetically heterogeneous populations.

Data and methods: We used the Framingham Heart Study data on life span and on individual genetic background to construct two sets of PCs. One was constructed to separate population stratification due to differences in ancestry from that induced by mortality selection. The other was constructed using genetic data on individuals of different ages without attempting to separate the ancestry effects from the mortality selection effects. The GWASs of human life span were performed using the first 20 PCs from each of the selected sets to control for possible population stratification.

Results: The results indicated that the GWAS that used the PC set separating population stratification induced by mortality selection from differences in ancestry produced stronger genetic signals than the GWAS that used PCs without such separation.

Conclusion: The quality of genetic estimates in GWAS can be improved when changes in genetic structure caused by mortality selection are taken into account in controlling for possible effects of population stratification.

背景:校正群体分层的潜在影响是复杂性状全基因组关联研究(GWAS)中的一个重要问题。研究群体遗传结构的主成分分析(PCA),随后在GWAS回归模型中加入前几个主成分(PCs),通常用于此目的。问题:对于长寿相关的性状,这样的修正可能会对基因分析的准确性产生负面影响。这是因为在遗传异质性群体中,pc可能捕获由死亡率选择过程引起的遗传结构。数据和方法:我们使用弗雷明汉心脏研究的寿命和个体遗传背景数据来构建两套pc。一个是为了将由于祖先差异造成的群体分层与由死亡率选择引起的群体分层区分开来。另一个是利用不同年龄个体的遗传数据构建的,没有试图将祖先效应与死亡率选择效应分开。使用每个选择集的前20个pc进行人类寿命的GWASs,以控制可能的群体分层。结果:结果表明,使用PC集分离由祖先差异引起的死亡率选择引起的群体分层的GWAS比不使用PC集分离的GWAS产生更强的遗传信号。结论:在控制群体分层可能产生的影响时,考虑死亡率选择引起的遗传结构变化,可以提高GWAS遗传估计的质量。
{"title":"Genetic Structures of Population Cohorts Change with Increasing Age: Implications for Genetic Analyses of Human aging and Life Span.","authors":"Anatoliy I Yashin,&nbsp;Deqing Wu,&nbsp;Konstantin G Arbeev,&nbsp;Liubov S Arbeeva,&nbsp;Igor Akushevich,&nbsp;Alexander Kulminski,&nbsp;Irina Culminskaya,&nbsp;Eric Stallard,&nbsp;Svetlana V Ukraintseva","doi":"","DOIUrl":"","url":null,"abstract":"<p><strong>Background: </strong>Correcting for the potential effects of population stratification is an important issue in genome wide association studies (GWAS) of complex traits. Principal component analysis (PCA) of the genetic structure of the population under study with subsequent incorporation of the first several principal components (PCs) in the GWAS regression model is often used for this purpose.</p><p><strong>Problem: </strong>For longevity related traits such a correction may negatively affect the accuracy of genetic analyses. This is because PCs may capture genetic structure induced by mortality selection processes in genetically heterogeneous populations.</p><p><strong>Data and methods: </strong>We used the Framingham Heart Study data on life span and on individual genetic background to construct two sets of PCs. One was constructed to separate population stratification due to differences in ancestry from that induced by mortality selection. The other was constructed using genetic data on individuals of different ages without attempting to separate the ancestry effects from the mortality selection effects. The GWASs of human life span were performed using the first 20 PCs from each of the selected sets to control for possible population stratification.</p><p><strong>Results: </strong>The results indicated that the GWAS that used the PC set separating population stratification induced by mortality selection from differences in ancestry produced stronger genetic signals than the GWAS that used PCs without such separation.</p><p><strong>Conclusion: </strong>The quality of genetic estimates in GWAS can be improved when changes in genetic structure caused by mortality selection are taken into account in controlling for possible effects of population stratification.</p>","PeriodicalId":72218,"journal":{"name":"Annals of gerontology and geriatric research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2014-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4398390/pdf/nihms665969.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33233544","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Plasminogen Activator Inhibitor-1, Body Fat and Insulin Action in Aging Women. 纤溶酶原激活物抑制剂-1、体脂和胰岛素在老年妇女中的作用。
Shawna McMillin, A S Ryan

Plasminogen activator inhibitor-1 (PAI-1) over-expression is linked to obesity, insulin resistance, and age. We hypothesized that aerobically trained women athletes would have reduced PAI-1 regardless of age compared to sedentary controls and levels would be associated with hyperinsulinemia. Plasma PAI-1 was measured in women athletes who were young (YA, n=19, VO2max=53.7±1.1ml/kg/min) and older (OA, n=18, VO2max=46.6±1.5ml/kg/min) and compared to 19 sedentary controls (YC, n=6, VO2max=35.9±1.2ml/kg/min; OC, n=13, VO2max=22.1±1.7ml/kg/min). PAI-1 levels did not differ between YA and OA but was 23% higher in OC compared to OA (P<0.05). PAI-1 was inversely associated with VO2max, directly to %body fat, and subcutaneous abdominal fat, fasting leptin, insulin, and first-phase and second-phase insulin response during a hyperglycemic clamp. The current results suggest that older athletes have low PAI-1 levels possibly due to high levels of physical fitness, reduced body fat, and increased insulin action and may contribute to low atherothrombosis and improved cardiovascular health.

纤溶酶原激活物抑制剂-1 (PAI-1)的过度表达与肥胖、胰岛素抵抗和年龄有关。我们假设有氧训练的女性运动员与久坐的对照组相比,无论年龄大小,PAI-1水平都会降低,并且与高胰岛素血症有关。测定年轻(YA, n=19, VO2max=53.7±1.1ml/kg/min)和老年(OA, n=18, VO2max=46.6±1.5ml/kg/min)女运动员血浆PAI-1水平,并与19名久坐对照(YC, n=6, VO2max=35.9±1.2ml/kg/min;OC, n=13, VO2max=22.1±1.7ml/kg/min)。PAI-1水平在YA和OA之间没有差异,但OC比OA高23% (P2max,直接与%体脂,皮下脂肪,空腹瘦素,胰岛素,以及高血糖钳夹期间的第一和第二阶段胰岛素反应)。目前的研究结果表明,老年运动员PAI-1水平较低可能是由于身体健康水平高、体脂减少和胰岛素作用增加,这可能有助于降低动脉粥样硬化血栓形成和改善心血管健康。
{"title":"Plasminogen Activator Inhibitor-1, Body Fat and Insulin Action in Aging Women.","authors":"Shawna McMillin,&nbsp;A S Ryan","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>Plasminogen activator inhibitor-1 (PAI-1) over-expression is linked to obesity, insulin resistance, and age. We hypothesized that aerobically trained women athletes would have reduced PAI-1 regardless of age compared to sedentary controls and levels would be associated with hyperinsulinemia. Plasma PAI-1 was measured in women athletes who were young (YA, n=19, VO<sub>2max</sub>=53.7±1.1ml/kg/min) and older (OA, n=18, VO<sub>2max</sub>=46.6±1.5ml/kg/min) and compared to 19 sedentary controls (YC, n=6, VO<sub>2max</sub>=35.9±1.2ml/kg/min; OC, n=13, VO<sub>2max</sub>=22.1±1.7ml/kg/min). PAI-1 levels did not differ between YA and OA but was 23% higher in OC compared to OA (P<0.05). PAI-1 was inversely associated with VO<sub>2max</sub>, directly to %body fat, and subcutaneous abdominal fat, fasting leptin, insulin, and first-phase and second-phase insulin response during a hyperglycemic clamp. The current results suggest that older athletes have low PAI-1 levels possibly due to high levels of physical fitness, reduced body fat, and increased insulin action and may contribute to low atherothrombosis and improved cardiovascular health.</p>","PeriodicalId":72218,"journal":{"name":"Annals of gerontology and geriatric research","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2014-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4539000/pdf/nihms714656.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"34007604","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Annals of gerontology and geriatric research
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1