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Non-Instrumented Nucleic Acid Amplification (NINA) for Rapid Detection of Ralstonia solanacearum Race 3 Biovar 2. 非仪器核酸扩增(NINA)快速检测茄青枯菌3种生物变种2。
Pub Date : 2011-01-01 DOI: 10.13031/2013.38508
Ryo Kubota, Paul LaBarre, Jered Singleton, Andy Beddoe, Bernhard H Weigl, Anne M Alvarez, Daniel M Jenkins

We report on the use of a non-instrumented device for the implementation of a loop-mediated amplification (LAMP) based assay for the select-agent bacterial-wilt pathogen Ralstonia solanacearum race 3 biovar 2. Heat energy is generated within the device by the exothermic hydration of calcium oxide, and the reaction temperature is regulated by storing latent energy at the melting temperature of a renewable lipid-based engineered phase-change material. Endpoint detection of the LAMP reaction is achieved without opening the reaction tube by observing the fluorescence of an innovative FRET-based hybridization probe with a simple custom fluorometer. Non-instrumented devices could maintain reactions near the design temperature of 63°C for at least an hour. Using this approach DNA extracted from the pathogen could be detected at fewer than ten copies within a 25 μL reaction mix, illustrating the potential of these technologies for simple, powerful agricultural diagnostics in the field. Furthermore, the assay was just as reliable when implemented in a tropical environment at 31°C as it was when implemented in an air-conditioned lab maintained at 22°C, illustrating the potential value of the technology for field conditions in the tropics and subtropics.

我们报道了使用非仪器设备实施环介导扩增(LAMP)为基础的测定选择剂青枯病病原菌Ralstonia solanacearum种族3生物品种2。该装置通过氧化钙的放热水化产生热能,并通过将潜能储存在可再生脂基工程相变材料的熔化温度来调节反应温度。通过使用简单的定制荧光计观察创新的基于fret的杂交探针的荧光,无需打开反应管即可实现LAMP反应的端点检测。非仪器设备可以将反应保持在63°C的设计温度附近至少一个小时。利用这种方法,在25 μL的反应混合物中可以检测到从病原体中提取的DNA少于10个拷贝,这说明了这些技术在田间简单,强大的农业诊断方面的潜力。此外,在温度为31°C的热带环境中进行的检测与在温度为22°C的空调实验室中进行的检测同样可靠,这说明了该技术在热带和亚热带野外条件下的潜在价值。
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引用次数: 22
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Biological engineering transactions
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