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Epigenetic Signature of Impaired Fasting Glucose in the Old Order Amish. 旧秩序阿米什人空腹血糖受损的表观遗传特征。
Pub Date : 2017-01-01 Epub Date: 2017-06-16 DOI: 10.21767/2472-1158.100052
May E Montasser, Yu-Ching Cheng, Keith Tanner, Alan R Shuldiner, Jeffrey R O'Connell

Introduction: Type 2 Diabetes (T2D) is a common chronic disease with substantial disease burden and economic impact. Lifestyle changes can significantly alter the course of the disease, if detected at an early stage. DNA methylation signature may serve as a biomarker for early detection of increased T2D risk.

Design: DNA methylation profiling was performed using the Illumina Infinium Human Methylation 450K Bead chip array in 24 normoglycemic Old Order Amish (OOA) individuals who later developed Impaired Fasting Glucose (IFG) (cases), and 24 OOA individuals who remained normoglycemic after an average follow up of 10 years (controls). Cases and controls were matched on age, sex, BMI, baseline fasting glucose, and glucose level after 2 h from 75 g Oral Glucose Tolerance Test (OGTT).

Results: Association analysis found no significant difference in either global methylation or individual probe methylation between cases and controls, however, the top 34 suggestive significant sites were located in genes with interesting biological links to T2D and glycemic traits. These genes include BTC that plays a role in pancreatic cell proliferation and insulin secretion, ITGA1 a known bone mineral density gene that was recently found to be associated also with T2D and glycemic traits, and may explain the link between T2D and BMD, and RPTOR and TSC2 both of which are part of insulin signaling pathway.

Conclusions: These results may shed light on the initiation and development of hyperglycemia and T2D and help to identify high risk individuals for early intervention; however, further studies are required for validation.

2型糖尿病(T2D)是一种常见的慢性疾病,具有巨大的疾病负担和经济影响。如果在早期发现,生活方式的改变可以显著改变疾病的进程。DNA甲基化特征可以作为早期检测T2D风险增加的生物标志物。设计:使用Illumina Infinium人甲基化450K芯片阵列对24名血糖正常的Old Order Amish (OOA)个体进行DNA甲基化分析,这些个体后来发展为空腹血糖受损(IFG)(病例),24名OOA个体在平均随访10年后仍保持正常血糖(对照组)。患者和对照组在年龄、性别、BMI、基线空腹血糖和75 g口服葡萄糖耐量试验(OGTT) 2小时后的血糖水平上相匹配。结果:关联分析发现,在病例和对照组之间,整体甲基化或单个探针甲基化没有显著差异,然而,前34个暗示显著的位点位于与T2D和血糖特征有有趣的生物学联系的基因上。这些基因包括BTC,在胰腺细胞增殖和胰岛素分泌中起作用,ITGA1是一种已知的骨密度基因,最近发现它也与T2D和血糖特征相关,并可能解释T2D和BMD之间的联系,RPTOR和TSC2都是胰岛素信号通路的一部分。结论:这些结果可能有助于揭示高血糖和T2D的发生和发展,并有助于识别高危个体进行早期干预;然而,需要进一步的研究来验证。
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引用次数: 0
The emerging role of extracellular vesicle-derived miRNAs: implication in cancer progression and stem cell related diseases. 细胞外囊泡来源的mirna的新作用:在癌症进展和干细胞相关疾病中的意义
Pub Date : 2016-01-01 Epub Date: 2016-01-31
Qiwei Yang, Michael P Diamond, Ayman Al-Hendy

Cells release into the extracellular environment, diverse types of membrane vesicles of endosomal and plasma membrane origin called exosomes and microvesicles. A number of studies indicate that these extracellular vehicles (EVs) mediate the interaction between cancer cells and their microenvironment; and thereby, play a critical role in the development of cancers. EVs contain cargo which consist of proteins, lipids, mRNAs, and miRNAs that can be delivered to different types of cells in nascent as well as distal locations. Discovery of this latter cargo has drawn an increasing amount of attention, due to their altering effects on the transcriptome, proteins, and subsequent cellular characteristics in recipient cells. Cancer cell derived exosomes (CCEs) have been identified in body fluids of cancer patients including urine, plasma and saliva. Because CCE content largely depends on tumor type and stage, they invariably lend great potential in serving as prognostic and diagnostic markers. Notably, accumulating evidence demonstrates that EV-derived miRNAs have key roles in regulating various aspects of cellular homeostasis, including proliferation, survival, migration, metastasis, and the immune system etc. More recently, diagnostic and therapeutic exploitation of stem cells derived EVs are under investigation. This review aims to summarize recent advances in EV-derived miRNAs in a variety of tumor types, and suggests that these cancer-derived exosomal miRNAs play a critical role in regulating cellular functions in surrounding and distant locations. It also discusses the role of adverse environmental exposure in altering stem cell exosomal miRNA profiling, which we believe leads to changes in the extracellular environment as well as a diverse range of biological processes.

细胞释放到细胞外环境中,各种类型的内体和质膜起源的膜泡称为外泌体和微泡。许多研究表明,这些细胞外载体(ev)介导癌细胞与其微环境之间的相互作用;因此,在癌症的发展中起着关键作用。电动汽车含有由蛋白质、脂质、mrna和mirna组成的货物,可以递送到新生和远端不同类型的细胞。由于它们对受体细胞的转录组、蛋白质和随后的细胞特征的改变作用,后一种货物的发现引起了越来越多的关注。癌细胞来源的外泌体(CCEs)已在癌症患者的体液中发现,包括尿液、血浆和唾液。由于CCE的含量在很大程度上取决于肿瘤的类型和分期,因此它们在作为预后和诊断指标方面总是具有很大的潜力。值得注意的是,越来越多的证据表明,ev衍生的mirna在调节细胞内稳态的各个方面发挥关键作用,包括增殖、存活、迁移、转移和免疫系统等。最近,正在研究干细胞衍生的ev的诊断和治疗利用。本综述旨在总结ev衍生的mirna在各种肿瘤类型中的最新进展,并表明这些癌源性外泌体mirna在调节周围和远处的细胞功能中发挥关键作用。它还讨论了不良环境暴露在改变干细胞外泌体miRNA谱中的作用,我们认为这会导致细胞外环境以及多种生物过程的变化。
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引用次数: 0
Examination of Global Methylation and Targeted Imprinted Genes in Prader-Willi Syndrome. Prader-Willi综合征的整体甲基化和靶向印迹基因检测。
Pub Date : 2016-01-01 DOI: 10.21767/2472-1158.100026
A. Manzardo, M. Butler
CONTEXT Methylation changes observed in Prader-Willi syndrome (PWS) may impact global methylation as well as regional methylation status of imprinted genes on chromosome 15 (in cis) or other imprinted obesity-related genes on other chromosomes (in trans) leading to differential effects on gene expression impacting obesity phenotype unique to (PWS). OBJECTIVE Characterize the global methylation profiles and methylation status for select imprinted genes associated with obesity phenotype in a well-characterized imprinted, obesity-related syndrome (PWS) relative to a cohort of obese and non-obese individuals. DESIGN Global methylation was assayed using two methodologies: 1) enriched LINE-1 repeat sequences by EpigenDx and 2) ELISA-based immunoassay method sensitive to genomic 5-methylcytosine by Epigentek. Target gene methylation patterns at selected candidate obesity gene loci were determined using methylation-specific PCR. SETTING Study participants were recruited as part of an ongoing research program on obesity-related genomics and Prader-Willi syndrome. PARTICIPANTS Individuals with non-syndromic obesity (N=26), leanness (N=26) and PWS (N=39). RESULTS A detailed characterization of the imprinting status of select target genes within the critical PWS 15q11-q13 genomic region showed enhanced cis but not trans methylation of imprinted genes. No significant differences in global methylation were found between non-syndromic obese, PWS or non-obese controls. INTERVENTION None. MAIN OUTCOME MEASURES Percentage methylation and the methylation index. CONCLUSION The methylation abnormality in PWS due to errors of genomic imprinting effects both upstream and downstream effectors in the 15q11-q13 region showing enhanced cis but not trans methylation of imprinted genes. Obesity in our subject cohorts did not appear to impact global methylation levels using the described methodology.
在Prader-Willi综合征(PWS)中观察到的甲基化变化可能影响15号染色体上的印迹基因(顺式)或其他染色体上的其他印迹肥胖相关基因(反式)的整体甲基化和区域甲基化状态,从而导致影响PWS特有的肥胖表型的基因表达的差异效应。目的:在一组肥胖和非肥胖个体中,描述与肥胖表型相关的印迹型肥胖相关综合征(PWS)中选择的与肥胖表型相关的印迹基因的整体甲基化谱和甲基化状态。采用两种方法检测DESIGNGlobal甲基化:1)通过EpigenDx富集LINE-1重复序列,2)通过Epigentek对基因组5-甲基胞嘧啶敏感的elisa免疫分析法。在选定的候选肥胖基因位点上使用甲基化特异性PCR确定靶基因甲基化模式。研究参与者被招募为正在进行的肥胖相关基因组学和普瑞德-威利综合征研究项目的一部分。参与者:非综合征性肥胖(N=26)、消瘦(N=26)和PWS (N=39)患者。结果对PWS 15q11-q13基因组关键区域内选择的靶基因的印迹状态进行了详细的表征,结果显示印迹基因的顺式甲基化增强,而反式甲基化没有增强。在非综合征性肥胖、PWS和非肥胖对照组中,总体甲基化未发现显著差异。干预措施主要结局指标甲基化百分比和甲基化指数。结论基因组印迹效应在PWS中上游和下游15q11-q13区域的错误导致甲基化异常,印迹基因的顺式甲基化增强而非反式甲基化。使用所描述的方法,我们的受试者队列中的肥胖似乎没有影响全球甲基化水平。
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引用次数: 5
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Journal of clinical epigenetics
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