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Deep Learning strategies for Ultrasound in Pregnancy. 妊娠超声深度学习策略。
Pub Date : 2020-08-01 Epub Date: 2020-08-25
Pedro H B Diniz, Yi Yin, Sally Collins

Ultrasound is one of the most ubiquitous imaging modalities in clinical practice. It is cheap, does not require ionizing radiation and can be performed at the bedside, making it the most commonly utilized imaging technique in pregnancy. Despite these advantages, it does have some drawbacks such as relatively low imaging quality, low contrast, and high variability. With these constraints, automating the interpretation of ultrasound images is challenging. However, successful automated identification of structures within 3D ultrasound volumes has the potential to revolutionize clinical practice. For example, a small placental volume in the first trimester has been shown to be correlated to adverse outcome later in pregnancy. If the placenta could be segmented reliably and automatically from a static 3D ultrasound volume, it would facilitate the use of its estimated volume, and other morphological metrics, as part of a screening test for increased risk of pregnancy complications potentially improving clinical outcomes. Recently, deep learning has emerged, achieving state-of-the-art performance in various research fields, notably medical image analysis involving classification, segmentation, object detection, and tracking tasks. Due to its increased performance with large datasets, it has gained great interest in medical imaging applications. In this review, we present an overview of deep learning methods applied to ultrasound in pregnancy, introducing their architectures and analyzing their strategies. We then present some common problems and provide some perspectives into potential future research.

超声波是临床实践中最普遍的成像方式之一。它价格便宜,不需要电离辐射,可在床边进行,是妊娠期最常用的成像技术。尽管有这些优点,但它也有一些缺点,如成像质量相对较低、对比度低、可变性高。在这些制约因素的影响下,超声图像的自动判读具有挑战性。然而,成功地自动识别三维超声体积内的结构有可能彻底改变临床实践。例如,妊娠头三个月胎盘体积小与妊娠后期的不良预后有关。如果能从静态三维超声体积中可靠地自动分割胎盘,将有助于使用胎盘的估计体积和其他形态指标,作为妊娠并发症风险增加的筛查测试的一部分,从而改善临床预后。最近,深度学习异军突起,在多个研究领域取得了最先进的性能,特别是涉及分类、分割、物体检测和跟踪任务的医学图像分析。由于深度学习在大型数据集上的性能不断提高,它在医学影像应用中获得了极大的关注。在这篇综述中,我们概述了应用于孕期超声的深度学习方法,介绍了它们的架构并分析了它们的策略。然后,我们提出了一些常见问题,并对未来的潜在研究提供了一些展望。
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引用次数: 0
Deep Learning strategies for Ultrasound in Pregnancy. 妊娠超声的深度学习策略。
Pub Date : 2020-06-17 DOI: 10.33590/emjreprohealth/20-00100
P. H. B. Diniz, Yi Yin, S. Collins
Ultrasound is one of the most ubiquitous imaging modalities in clinical practice. It is cheap, does not require ionizing radiation and can be performed at the bedside, making it the most commonly utilized imaging technique in pregnancy. Despite these advantages, it does have some drawbacks such as relatively low imaging quality, low contrast, and high variability. With these constraints, automating the interpretation of ultrasound images is challenging. However, successful automated identification of structures within 3D ultrasound volumes has the potential to revolutionize clinical practice. For example, a small placental volume in the first trimester has been shown to be correlated to adverse outcome later in pregnancy. If the placenta could be segmented reliably and automatically from a static 3D ultrasound volume, it would facilitate the use of its estimated volume, and other morphological metrics, as part of a screening test for increased risk of pregnancy complications potentially improving clinical outcomes. Recently, deep learning has emerged, achieving state-of-the-art performance in various research fields, notably medical image analysis involving classification, segmentation, object detection, and tracking tasks. Due to its increased performance with large datasets, it has gained great interest in medical imaging applications. In this review, we present an overview of deep learning methods applied to ultrasound in pregnancy, introducing their architectures and analyzing their strategies. We then present some common problems and provide some perspectives into potential future research.
超声是临床实践中最普遍的成像方式之一。它便宜,不需要电离辐射,可以在床边进行,使其成为孕期最常用的成像技术。尽管有这些优点,但它也有一些缺点,如成像质量相对较低、对比度低和可变性大。由于这些限制,自动化超声图像的解释是具有挑战性的。然而,在三维超声体积内成功的结构自动识别有可能彻底改变临床实践。例如,孕早期胎盘体积小已被证明与妊娠后期的不良后果有关。如果胎盘能够从静态3D超声体积中可靠、自动地分割出来,它将有助于使用其估计体积和其他形态学指标,作为妊娠并发症风险增加的筛查试验的一部分,可能会改善临床结果。最近,深度学习已经出现,在各个研究领域取得了最先进的性能,特别是涉及分类、分割、目标检测和跟踪任务的医学图像分析。由于其在大数据集上的性能提高,它在医学成像应用中获得了极大的兴趣。在这篇综述中,我们概述了深度学习方法在妊娠超声中的应用,介绍了它们的结构并分析了它们的策略。然后,我们提出了一些常见的问题,并为潜在的未来研究提供了一些观点。
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引用次数: 13
New Insights into the Role of Phosphoinositide 3-Kinase Activity in the Physiology of Immature Oocytes: Lessons from Recent Mouse Model Studies. 磷酸肌肽3-激酶活性在未成熟卵母细胞生理中的作用的新认识:来自近期小鼠模型研究的教训。
Pub Date : 2018-06-01 Epub Date: 2018-06-07
So-Youn Kim, Takeshi Kurita

The immature oocytes within primordial follicles are arrested at Prophase I of meiosis and remain dormant until awakened by an increase in intracellular levels of phosphatidylinositol (3,4,5)-trisphosphate (PIP3). Oocyte PIP3 level is determined by the balance between the activity of phosphoinositide 3-kinase (PI3K) and phosphatase and tensin homologue (PTEN). When this balance favours PI3K, PIP3 levels elevate and trigger the cascade of PI3K/protein kinase B (AKT)/the mammalian target of rapamycin (mTOR) pathway, leading to activation of primordial follicles. This short review aims to provide new insights into the physiological functions of PI3K and PTEN in immature oocytes by summarising recent findings from murine model studies, including oocyte-specific transgenic mice with constitutively-active mutant PI3K.

原始卵泡内的未成熟卵母细胞在减数分裂的前I期被阻止,并保持休眠状态,直到细胞内磷脂酰肌醇(3,4,5)-三磷酸(PIP3)水平的增加唤醒。卵母细胞PIP3水平是由磷酸肌苷激酶(PI3K)和磷酸酶及紧张素同系物(PTEN)活性的平衡决定的。当这种平衡有利于PI3K时,PIP3水平升高并触发PI3K/蛋白激酶B (AKT)/哺乳动物雷帕霉素靶蛋白(mTOR)通路的级联反应,导致原始卵泡的激活。这篇简短的综述旨在通过总结小鼠模型研究的最新发现,为未成熟卵母细胞中PI3K和PTEN的生理功能提供新的见解,包括具有组成活性突变PI3K的卵母细胞特异性转基因小鼠。
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引用次数: 0
New Insights into the Role of Phosphoinositide 3-Kinase Activity in the Physiology of Immature Oocytes: Lessons from Recent Mouse Model Studies. 磷酸肌肽3-激酶活性在未成熟卵母细胞生理中的作用的新认识:来自近期小鼠模型研究的教训。
Pub Date : 2018-06-01 DOI: 10.33590/emj/10310672
So-Youn Kim, Takeshi Kurita
The immature oocytes within primordial follicles are arrested at Prophase I of meiosis and remain dormant until awakened by an increase in intracellular levels of phosphatidylinositol (3,4,5)-trisphosphate (PIP3). Oocyte PIP3 level is determined by the balance between the activity of phosphoinositide 3-kinase (PI3K) and phosphatase and tensin homologue (PTEN). When this balance favours PI3K, PIP3 levels elevate and trigger the cascade of PI3K/protein kinase B (AKT)/the mammalian target of rapamycin (mTOR) pathway, leading to activation of primordial follicles. This short review aims to provide new insights into the physiological functions of PI3K and PTEN in immature oocytes by summarising recent findings from murine model studies, including oocyte-specific transgenic mice with constitutively-active mutant PI3K.
原始卵泡内的未成熟卵母细胞在减数分裂的前I期被阻止,并保持休眠状态,直到细胞内磷脂酰肌醇(3,4,5)-三磷酸(PIP3)水平的增加唤醒。卵母细胞PIP3水平是由磷酸肌苷激酶(PI3K)和磷酸酶及紧张素同系物(PTEN)活性的平衡决定的。当这种平衡有利于PI3K时,PIP3水平升高并触发PI3K/蛋白激酶B (AKT)/哺乳动物雷帕霉素靶蛋白(mTOR)通路的级联反应,导致原始卵泡的激活。这篇简短的综述旨在通过总结小鼠模型研究的最新发现,为未成熟卵母细胞中PI3K和PTEN的生理功能提供新的见解,包括具有组成活性突变PI3K的卵母细胞特异性转基因小鼠。
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引用次数: 17
Regenerative Medicine, Disease Modeling, and Drug Discovery in Human Pluripotent Stem Cell-derived Kidney Tissue. 人类多能干细胞衍生肾组织的再生医学、疾病建模和药物发现。
Navin Gupta, Koichiro Susa, Ryuji Morizane

The multitude of research clarifying critical factors in embryonic organ development has been instrumental in human stem cell research. Mammalian organogenesis serves as the archetype for directed differentiation protocols, subdividing the process into a series of distinct intermediate stages that can be chemically induced and monitored for the expression of stage-specific markers. Significant advances over the past few years include established directed differentiation protocols of human embryonic stem cells (hESCs) and human induced pluripotent stem cells (hiPSCs) into human kidney organoids in vitro. Human kidney tissue in vitro simulate the in vivo response when subject to nephrotoxins, providing a novel screening platform during drug discovery to facilitate identification of lead candidates, reduce developmental expenditures, and reduce future rates of drug-induced acute kidney injury. Patient-derived hiPSCs, which bear naturally occurring DNA mutations, may allow for modeling of human genetic diseases to determine pathologic mechanisms and screen for novel therapeutics. In addition, recent advances in genome editing with CRISPR/Cas9 enable to generate specific mutations to study genetic disease with non-mutated lines serving as an ideal isogenic control. The growing population of patients with end-stage kidney disease (ESKD) is a world-wide healthcare problem with higher morbidity and mortality that warrants the discovery of novel forms of renal replacement therapy. Coupling the outlined advances in hiPSC research with innovative bioengineering techniques, such as decellularized kidney and 3D printed scaffolds, may contribute to the development of bioengineered transplantable human kidney tissue as a means of renal replacement therapy.

大量研究阐明了胚胎器官发育的关键因素,这对人类干细胞研究具有重要意义。哺乳动物器官发生是定向分化方案的原型,将该过程细分为一系列不同的中间阶段,这些阶段可以通过化学诱导和监测特定阶段标记物的表达。在过去几年中,人类胚胎干细胞(hESCs)和人类诱导多能干细胞(hiPSCs)在体外定向分化为人类肾脏类器官的研究取得了重大进展。人体肾脏组织在体外模拟体内对肾毒素的反应,为药物发现提供了一种新的筛选平台,有助于识别候选药物,减少开发支出,降低未来药物性急性肾损伤的发生率。患者来源的hipsc携带自然发生的DNA突变,可能允许建立人类遗传疾病的模型,以确定病理机制和筛选新的治疗方法。此外,利用CRISPR/Cas9进行基因组编辑的最新进展使得能够产生特定的突变来研究遗传疾病,而非突变系可以作为理想的等基因对照。终末期肾脏疾病(ESKD)患者数量的不断增长是一个具有较高发病率和死亡率的全球性卫生保健问题,需要发现新的肾脏替代疗法。将hiPSC研究的进展与创新的生物工程技术相结合,如脱细胞肾脏和3D打印支架,可能有助于生物工程可移植人类肾脏组织的发展,作为肾脏替代治疗的一种手段。
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引用次数: 0
Regenerative Medicine, Disease Modeling, and Drug Discovery in Human Pluripotent Stem Cell-derived Kidney Tissue. 人类多能干细胞衍生肾组织的再生医学、疾病建模和药物发现。
Pub Date : 2017-08-01 DOI: 10.33590/emjreprohealth/10310989
Navin R Gupta, K. Susa, Ryuji Morizane
The multitude of research clarifying critical factors in embryonic organ development has been instrumental in human stem cell research. Mammalian organogenesis serves as the archetype for directed differentiation protocols, subdividing the process into a series of distinct intermediate stages that can be chemically induced and monitored for the expression of stage-specific markers. Significant advances over the past few years include established directed differentiation protocols of human embryonic stem cells (hESCs) and human induced pluripotent stem cells (hiPSCs) into human kidney organoids in vitro. Human kidney tissue in vitro simulate the in vivo response when subject to nephrotoxins, providing a novel screening platform during drug discovery to facilitate identification of lead candidates, reduce developmental expenditures, and reduce future rates of drug-induced acute kidney injury. Patient-derived hiPSCs, which bear naturally occurring DNA mutations, may allow for modeling of human genetic diseases to determine pathologic mechanisms and screen for novel therapeutics. In addition, recent advances in genome editing with CRISPR/Cas9 enable to generate specific mutations to study genetic disease with non-mutated lines serving as an ideal isogenic control. The growing population of patients with end-stage kidney disease (ESKD) is a world-wide healthcare problem with higher morbidity and mortality that warrants the discovery of novel forms of renal replacement therapy. Coupling the outlined advances in hiPSC research with innovative bioengineering techniques, such as decellularized kidney and 3D printed scaffolds, may contribute to the development of bioengineered transplantable human kidney tissue as a means of renal replacement therapy.
大量研究阐明了胚胎器官发育的关键因素,这对人类干细胞研究具有重要意义。哺乳动物器官发生是定向分化方案的原型,将该过程细分为一系列不同的中间阶段,这些阶段可以通过化学诱导和监测特定阶段标记物的表达。在过去几年中,人类胚胎干细胞(hESCs)和人类诱导多能干细胞(hiPSCs)在体外定向分化为人类肾脏类器官的研究取得了重大进展。人体肾脏组织在体外模拟体内对肾毒素的反应,为药物发现提供了一种新的筛选平台,有助于识别候选药物,减少开发支出,降低未来药物性急性肾损伤的发生率。患者来源的hipsc携带自然发生的DNA突变,可能允许建立人类遗传疾病的模型,以确定病理机制和筛选新的治疗方法。此外,利用CRISPR/Cas9进行基因组编辑的最新进展使得能够产生特定的突变来研究遗传疾病,而非突变系可以作为理想的等基因对照。终末期肾脏疾病(ESKD)患者数量的不断增长是一个具有较高发病率和死亡率的全球性卫生保健问题,需要发现新的肾脏替代疗法。将hiPSC研究的进展与创新的生物工程技术相结合,如脱细胞肾脏和3D打印支架,可能有助于生物工程可移植人类肾脏组织的发展,作为肾脏替代治疗的一种手段。
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引用次数: 8
Recruitment of Minority Adolescents and Young Adults into Randomised Clinical Trials: Testing the Design of the Technology Enhanced Community Health Nursing (TECH-N) Pelvic Inflammatory Disease Trial. 招募少数民族青少年和年轻成人进入随机临床试验:测试技术增强社区卫生护理(TECH-N)盆腔炎试验的设计
Pub Date : 2016-08-01 DOI: 10.33590/emjreprohealth/10311621
M. Trent, S. Chung, C. Gaydos, K. Frick, J. Anders, S. Huettner, R. Rothman, A. Butz
PURPOSEPelvic inflammatory disease (PID) disproportionately affects adolescent and young adult (AYA) women and can negatively influence reproductive health trajectories. Few randomized controlled trials (RCTs) have focused on strategies to improve outpatient adherence or to reduce reproductive morbidity in this population. This paper describes the research methods and preliminary effectiveness of recruitment, retention, and intervention strategies employed in a novel RCT designed to test a technology-enhanced community-health nursing (TECH-N) intervention among urban AYA with PID.METHODSAYA women aged 13-25 years were recruited during acute PID visits in outpatient clinics and emergency departments (ED) to participate in this IRB-approved trial. Participants completed an audio-computerized self-interview (ACASI), provided vaginal specimens, and were randomized to standard treatment or the intervention. Intervention participants received text-messaging support for 30 days and a community health nurse (CHN) interventionist performed a home visit with clinical assessment within 5 days after enrollment. All patients received a full course of medications and completed research visits at 14-days (adherence), 30 days and 90 days with by an outreach worker. STI testing performed at the 30-and 90-day visits. Exploratory analyses using descriptive statistics were conducted to examine recruitment, retention, and follow-up data to test the overall design of the intervention.RESULTSIn the first 48 months, 64% of 463 patients were eligible for the study and 81.2% of 293 eligible patients were recruited for the study (63.3%); 238 (81.2%) of eligible patients were enrolled. Most participants were African American (95.6%) with a mean age of 18.6 (2.3). Ninety-four percent of individuals assigned to the TECH-N intervention completed the nursing visits. All completed visits have been within the 5-day window and over 90% of patients in both arms have been retained over the 3-month follow-up period. Biological data suggests a shift in the biological milieu with the predominance of Chlamydia trachomatis, Mycoplasma genitalium, and Trichomonas vaginalis infections.CONCLUSIONSPreliminary data from the TECH-N study demonstrated that urban, low-income, minority AYA with PID can effectively be recruited and retained to participate in sexual and reproductive health RCTs with sufficient investment in the design and infrastructure of the study. Community-based sexual health interventions appear to be both feasible and acceptable in this population.
目的盆腔炎(PID)对青少年和年轻成人(AYA)女性的影响尤为严重,并对生殖健康轨迹产生负面影响。很少有随机对照试验(rct)关注改善门诊依从性或降低这一人群生殖发病率的策略。本文描述了一项新型随机对照试验的研究方法和招募、保留和干预策略的初步效果,该试验旨在测试技术增强的社区卫生护理(TECH-N)干预在患有PID的城市AYA中的应用。方法在门诊和急诊科(ED)急性PID就诊期间招募年龄在13-25岁的saya女性参加这项经irb批准的试验。参与者完成了音频计算机自我访谈(ACASI),提供了阴道标本,并随机分为标准治疗组或干预组。参与干预的参与者接受了30天的短信支持,一名社区卫生护士(CHN)干预人员在入组后5天内进行了家访和临床评估。所有患者都接受了整个疗程的药物治疗,并在第14天(依从性)、第30天和第90天由外展工作人员完成了研究访问。在30天和90天的访问中进行STI测试。采用描述性统计进行探索性分析,以检查招募、保留和随访数据,以检验干预的总体设计。结果在前48个月,463例患者中有64%符合研究条件,293例符合研究条件的患者中有81.2%(63.3%)被纳入研究;238例(81.2%)符合条件的患者入组。大多数参与者是非裔美国人(95.6%),平均年龄为18.6岁(2.3岁)。94%被分配到TECH-N干预组的人完成了护理访问。所有的随访均在5天内完成,超过90%的两组患者在3个月的随访期间得以保留。生物学数据表明,生物环境发生了变化,沙眼衣原体、生殖支原体和阴道毛滴虫感染占主导地位。结论TECH-N研究的初步数据表明,只要在研究的设计和基础设施方面投入足够的资金,可以有效地招募和保留城市、低收入、少数民族的患有PID的AYA参与性健康和生殖健康随机对照试验。在这一人群中,以社区为基础的性健康干预措施似乎既可行又可接受。
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引用次数: 15
期刊
European Medical Journal. Reproductive health
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