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Metabolic reprogramming and renal fibrosis: what role might Chinese medicine play? 代谢重编程与肾脏纤维化:中医药能发挥什么作用?
IF 5.3 3区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE Pub Date : 2024-10-28 DOI: 10.1186/s13020-024-01004-x
Weili Wang, Rong Dai, Meng Cheng, Yizhen Chen, Yilin Gao, Xin Hong, Wei Zhang, Yiping Wang, Lei Zhang

Metabolic reprogramming is a pivotal biological process in which cellular metabolic patterns change to meet the energy demands of increased cell growth and proliferation. In this review, we explore metabolic reprogramming and its impact on fibrotic diseases, providing a detailed overview of the key processes involved in the metabolic reprogramming of renal fibrosis, including fatty acid decomposition and synthesis, glycolysis, and amino acid catabolism. In addition, we report that Chinese medicine ameliorates renal inflammation, oxidative stress, and apoptosis in chronic kidney disease by regulating metabolic processes, thereby inhibiting renal fibrosis. Furthermore, we reveal that multiple targets and signaling pathways contribute to the metabolic regulatory effects of Chinese medicine. In summary, this review aims to elucidate the mechanisms by which Chinese medicine inhibits renal fibrosis through the remodeling of renal cell metabolic processes, with the goal of discovering new therapeutic drugs for treating renal fibrosis.

代谢重编程是一个关键的生物过程,在这一过程中,细胞代谢模式发生改变,以满足细胞生长和增殖增加对能量的需求。在这篇综述中,我们探讨了代谢重编程及其对纤维化疾病的影响,详细概述了参与肾纤维化代谢重编程的关键过程,包括脂肪酸分解和合成、糖酵解和氨基酸分解。此外,我们还报告了中药通过调节代谢过程改善慢性肾脏病的肾脏炎症、氧化应激和细胞凋亡,从而抑制肾脏纤维化。此外,我们还揭示了多种靶点和信号通路对中药代谢调节作用的贡献。综上所述,本综述旨在阐明中药通过重塑肾细胞代谢过程抑制肾纤维化的机制,以期发现治疗肾纤维化的新药。
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引用次数: 0
Shen-Bai-Jie-Du decoction suppresses the progression of colorectal adenoma to carcinoma through regulating gut microbiota and short-chain fatty acids. 神白解毒汤通过调节肠道微生物群和短链脂肪酸抑制结直肠腺瘤向癌的发展。
IF 5.3 3区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE Pub Date : 2024-10-28 DOI: 10.1186/s13020-024-01019-4
Min Huang, Ye Zhang, Mingxin Ni, Meng Shen, Yuquan Tao, Weixing Shen, Dongdong Sun, Liu Li, Changliang Xu, Jiani Tan, Yueyang Lai, Chengtao Yu, Lihuiping Tao, Minmin Fan, Haibo Cheng

Background: Shen-Bai-Jie-Du decoction (SBJDD), a traditional Chinese herb formula developed based on evidence-based medicine, is efficacy to reduce the recurrence and carcinogenesis of colorectal adenoma. However, the mechanism of SBJDD to treat colorectal adenoma remains unclear. The present study aims to investigate the efficacy and mechanism of SBJDD on colorectal adenoma carcinogenesis from the aspects of regulating gut microbiota and short-chain fatty acids (SCFAs).

Methods: Twenty-one patients diagnosed with colorectal adenoma were recruited in the study and required to take SBJDD for four consecutive weeks. Analysis of gut microbiota was conducted using 16S rRNA gene amplicon sequencing, while levels of SCFAs in fecal and serum samples were determined through HPLC-MS/MS. Additionally, twenty-four Apcmin/+ mice were randomly assigned to normal diet (ND), high-fat diet (HFD), and SBJDD groups. The pharmacological effects and mechanism of SBJDD on colorectal adenoma carcinogenesis were assessed using RT-qPCR, HE staining, IHC staining, Western blot, IF staining, and Flow cytometry assays.

Results: Our clinical study has shown that SBJDD can regulate the gut microbiota composition and enhance SCFAs production in patients with colorectal adenoma. SBJDD alleviated colorectal adenoma formation and carcinogenesis, as well as protected the integrity of the intestinal barrier in the Apcmin/+ mice model compared to the HFD group. Additionally, SBJDD was found to regulate gut microbiota capable of producing SCFAs. G protein-coupled receptors GPR43, GPR41, and GPR109a were effectively activated in the SBJDD group, while HDAC1 and HDAC3 were inhibited. Furthermore, decreased expression levels of interleukin 1 beta (IL-1β) and interleukin 6 (IL-6), along with elevated expression level of interleukin 10 (IL-10), were observed in the colorectal tissue of the SBJDD group. Finally, SBJDD exhibited the ability to reduce the proportion of M1-type macrophages while increasing the proportion of M2-type macrophages.

Conclusions: Our study objectively demonstrated the pharmacological effects of SBJDD in inhibiting the progression of colorectal adenoma and investigated its mechanisms in terms of regulating gut microbiota, increasing SCFAs, and reducing colorectal inflammation.

背景神白解毒汤(SBJDD)是根据循证医学开发的传统中草药配方,具有减少大肠腺瘤复发和癌变的功效。然而,SBJDD 治疗大肠腺瘤的机制仍不清楚。本研究旨在从调节肠道微生物群和短链脂肪酸(SCFAs)方面探讨SBJDD对大肠腺瘤癌变的疗效和机制:研究招募了21名确诊为大肠腺瘤的患者,要求他们连续服用SBJDD四周。采用 16S rRNA 基因扩增序列分析肠道微生物群,并通过 HPLC-MS/MS 测定粪便和血清样本中的 SCFAs 含量。此外,24 只 Apcmin/+ 小鼠被随机分配到正常饮食组(ND)、高脂饮食组(HFD)和 SBJDD 组。采用 RT-qPCR、HE 染色、IHC 染色、Western 印迹、IF 染色和流式细胞术等方法评估了 SBJDD 对大肠腺癌发生的药理作用和机制:结果:我们的临床研究表明,SBJDD 可以调节结直肠腺瘤患者的肠道微生物群组成,促进 SCFAs 的产生。与高纤维食物组相比,SBJDD 可减轻 Apcmin/+ 小鼠模型中结直肠腺瘤的形成和癌变,并保护肠道屏障的完整性。此外,研究还发现 SBJDD 能够调节肠道微生物群,使其能够产生 SCFAs。在 SBJDD 组中,G 蛋白偶联受体 GPR43、GPR41 和 GPR109a 被有效激活,而 HDAC1 和 HDAC3 则受到抑制。此外,在 SBJDD 组的结直肠组织中观察到白细胞介素 1β(IL-1β)和白细胞介素 6(IL-6)的表达水平降低,白细胞介素 10(IL-10)的表达水平升高。最后,SBJDD 能降低 M1 型巨噬细胞的比例,同时增加 M2 型巨噬细胞的比例:我们的研究客观地证明了 SBJDD 在抑制结直肠腺瘤进展方面的药理作用,并从调节肠道微生物群、增加 SCFAs 和减少结直肠炎症等方面研究了其作用机制。
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引用次数: 0
Correction: Total tanshinones ameliorates cGAS-STING-mediated inflammatory and autoimmune diseases by affecting STING-IRF3 binding. 更正:丹参酮总量通过影响 STING-IRF3 的结合,改善 cGAS-STING 介导的炎症和自身免疫性疾病。
IF 5.3 3区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE Pub Date : 2024-10-23 DOI: 10.1186/s13020-024-00996-w
Chengwei Li, Jincai Wen, Xiaoyan Zhan, Wei Shi, Xiu Ye, Qing Yao, Simin Chen, Congyang Zheng, Xianlin Wang, Xinru Wen, Xiaohe Xiao, Yinghao Wang, Zhaofang Bai
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引用次数: 0
Correction: The improvement of modified Si-Miao granule on hepatic insulin resistance and glycogen synthesis in type 2 diabetes mellitus involves the inhibition of TNF-α/JNK1/IRS-2 pathway: network pharmacology, molecular docking, and experimental validation. 更正:改良四妙颗粒对2型糖尿病患者肝脏胰岛素抵抗和糖原合成的改善涉及对TNF-α/JNK1/IRS-2通路的抑制:网络药理学、分子对接和实验验证。
IF 5.3 3区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE Pub Date : 2024-10-21 DOI: 10.1186/s13020-024-01012-x
Zebiao Cao, Xianzhe Wang, Zhili Zeng, Zhaojun Yang, Yuping Lin, Lu Sun, Qiyun Lu, Guanjie Fan
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引用次数: 0
Zhi-Kang-Yin formula attenuates high-fat diet-induced metabolic disorders through modulating gut microbiota-bile acids axis in mice. 知康阴方通过调节小鼠肠道微生物群-胆汁酸轴减轻高脂饮食引起的代谢紊乱。
IF 5.3 3区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE Pub Date : 2024-10-18 DOI: 10.1186/s13020-024-01021-w
Yifan Li, Hao Wang, Xiaofang He, Weize Zhu, Yiyang Bao, Xinxin Gao, Wenjin Huang, Xinyu Ge, Wenjing Wei, Huan Zhang, Lili Sheng, Tao Zhang, Houkai Li

Background: Metabolic disorders have become one of the global medical problems. Due to the complexity of its pathogenesis, there is still no effective treatment. Bile acids (BAs) and gut microbiota (GM) have been proved to be closely related to host metabolism, which could be important targets for metabolic disorders. Zhi-Kang-Yin (ZKY) is a traditional Chinese medicine (TCM) formula developed by the research team according to theory of TCM and has been shown to improve metabolism in clinic. However, the underlying mechanisms are unclear.

Aim of the study: This study aimed to investigate the potential mechanisms of the beneficial effect of ZKY on metabolism.

Methods: High-fat diet (HFD)-fed mice were treated with and without ZKY. The glucose and lipid metabolism-related indexes were measured. BA profile, GM composition and hepatic transcriptome were then investigated to analyze the changes of BAs, GM, and hepatic gene expression. Moreover, the relationship between GM and BAs was identified with functional gene quantification and ex vivo fermentation experiment.

Results: ZKY reduced weight gain and lipid levels in both liver and serum, attenuated hepatic steatosis and improved glucose tolerance in HFD-fed mice. BA profile detection showed that ZKY changed the composition of BAs and increased the proportion of unconjugated BAs and non-12-OH BAs. Hepatic transcriptomic analysis revealed fatty acid metabolism and BA biosynthesis related pathways were regulated. In addition, ZKY significantly changed the structure of GM and upregulated the gene copy number of bacterial bile salt hydrolase. Meanwhile, ZKY directly promoted the growth of Bifidobacterium, which is a well-known bile salt hydrolase-producing genus. The ex vivo co-culture experiment with gut microbiota and BAs demonstrated that the changes of BAs profile in ZKY group were mediated by ZKY-shifted GM, which led to increased expression of genes associated with fatty acid degradation in the liver.

Conclusion: Our study indicated that the effect of ZKY on improving metabolism is associated with the modulation of GM-BAs axis, especially, by upregulating the abundance of bile salt hydrolase-expression bacteria and increasing the levels of unconjugated BAs. This study indicates that GM-BAs axis might be an important pathway for improving metabolic disorders by ZKY.

背景:代谢紊乱已成为全球医学难题之一。由于其发病机制的复杂性,目前仍没有有效的治疗方法。胆汁酸(BA)和肠道微生物群(GM)已被证实与宿主的新陈代谢密切相关,可能成为代谢紊乱的重要靶点。至康饮(ZKY)是研究团队根据中医理论研制的传统中药配方,在临床上已被证明能改善代谢。然而,其潜在机制尚不清楚:研究目的:本研究旨在探讨 ZKY 对代谢有益作用的潜在机制。测量葡萄糖和脂质代谢相关指标。然后研究 BA、GM 组成和肝脏转录组,分析 BA、GM 和肝脏基因表达的变化。此外,还通过功能基因定量和体内外发酵实验确定了 GM 与 BA 之间的关系:结果:ZKY 降低了高密度脂蛋白喂养小鼠的体重增加和肝脏及血清中的脂质水平,减轻了肝脏脂肪变性,改善了葡萄糖耐量。BA谱检测显示,ZKY改变了BA的组成,增加了非结合BA和非12-OH BA的比例。肝脏转录组分析显示,脂肪酸代谢和 BA 生物合成相关途径受到调控。此外,ZKY 还明显改变了 GM 的结构,并上调了细菌胆盐水解酶的基因拷贝数。同时,ZKY 直接促进了双歧杆菌的生长,而双歧杆菌是一种著名的产胆盐水解酶的菌属。肠道微生物群和胆盐水解酶的体外共培养实验表明,ZKY 组胆盐水解酶谱的变化是由 ZKY 转移的 GM 介导的,这导致肝脏中脂肪酸降解相关基因的表达增加:我们的研究表明,ZKY 对改善代谢的影响与 GM-BAs 轴的调节有关,特别是通过上调胆盐水解酶表达菌的丰度和增加非结合型 BAs 的水平。这项研究表明,GM-BAs 轴可能是 ZKY 改善代谢紊乱的一个重要途径。
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引用次数: 0
PrescDRL: deep reinforcement learning for herbal prescription planning in treatment of chronic diseases. PrescDRL:用于慢性病治疗中草药处方规划的深度强化学习。
IF 5.3 3区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE Pub Date : 2024-10-16 DOI: 10.1186/s13020-024-01005-w
Kuo Yang, Zecong Yu, Xin Su, Fengjin Zhang, Xiong He, Ning Wang, Qiguang Zheng, Feidie Yu, Tiancai Wen, Xuezhong Zhou

Treatment planning for chronic diseases is a critical task in medical artificial intelligence, particularly in traditional Chinese medicine (TCM). However, generating optimized sequential treatment strategies for patients with chronic diseases in different clinical encounters remains a challenging issue that requires further exploration. In this study, we proposed a TCM herbal prescription planning framework based on deep reinforcement learning for chronic disease treatment (PrescDRL). PrescDRL is a sequential herbal prescription optimization model that focuses on long-term effectiveness rather than achieving maximum reward at every step, thereby ensuring better patient outcomes. We constructed a high-quality benchmark dataset for sequential diagnosis and treatment of diabetes and evaluated PrescDRL against this benchmark. Our results showed that PrescDRL achieved a higher curative effect, with the single-step reward improving by 117% and 153% compared to doctors. Furthermore, PrescDRL outperformed the benchmark in prescription prediction, with precision improving by 40.5% and recall improving by 63%. Overall, our study demonstrates the potential of using artificial intelligence to improve clinical intelligent diagnosis and treatment in TCM.

慢性病的治疗规划是医学人工智能的一项重要任务,尤其是在传统中医领域。然而,为不同临床情况下的慢性病患者生成优化的序贯治疗策略仍是一个具有挑战性的问题,需要进一步探索。在这项研究中,我们提出了一个基于深度强化学习的慢性病治疗中药处方规划框架(PrescDRL)。PrescDRL 是一种顺序中药处方优化模型,它关注长期疗效,而不是在每一步都获得最大回报,从而确保患者获得更好的治疗效果。我们构建了一个高质量的糖尿病序贯诊断和治疗基准数据集,并根据该基准对 PrescDRL 进行了评估。结果表明,PrescDRL 取得了更高的疗效,与医生相比,单步奖励分别提高了 117% 和 153%。此外,PrescDRL 在处方预测方面的表现优于基准,精确度提高了 40.5%,召回率提高了 63%。总之,我们的研究证明了利用人工智能改善中医临床智能诊断和治疗的潜力。
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引用次数: 0
Yiqihuoxue decoction (GSC) inhibits mitochondrial fission through the AMPK pathway to ameliorate EPCs senescence and optimize vascular aging transplantation regimens. 益气活血汤(GSC)通过AMPK途径抑制线粒体分裂,从而改善EPCs衰老,优化血管衰老移植方案。
IF 5.3 3区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE Pub Date : 2024-10-14 DOI: 10.1186/s13020-024-01008-7
Yinan Liu, Zenghui Niu, Xue Wang, Chengkui Xiu, Yanhong Hu, Jiali Wang, Yan Lei, Jing Yang

Background: During the aging process, the number and functional activity of endothelial progenitor cells (EPCs) are impaired, leading to the unsatisfactory efficacy of transplantation. Previous studies demonstrated that Yiqihuoxue decoction (Ginseng-Sanqi-Chuanxiong, GSC) exerts anti-vascular aging effects. The purpose of this study is to evaluated the effects of GSC on D-galactose (D-gal)induced senescence and the underlying mechanisms.

Methods: The levels of cellular senescence-related markers P16, P21, P53, AMPK and p-AMPK were detected by Western blot analysis (WB). SA-β-gal staining was used to evaluate cell senescence. EPCs function was measured by CCK-8, Transwell cell migration and cell adhesion assay. The morphological changes of mitochondria were detected by confocal microscopy. The protein and mRNA expression of mitochondrial fusion fission Drp1, Mff, Fis1, Mfn1, Mfn2 and Opa1 in mitochondria were detect using WB and RT-qPCR. Mitochondrial membrane potential, mtROS and ATP of EPCs were measured using IF. H&E staining was used to observe the pathological changes and IMT of the aorta. The expressions of AGEs, MMP-2 and VEGF in aorta were measured using Immunohistochemical (IHC). The levels of SOD, MDA, NO and ET-1 in serum were detected by SOD, MDA and NO kits.

Results: In vitro, GSC ameliorated the senescence of EPCs induced by D-gal and reduced the expression of P16, P21 and P53. The mitochondrial morphology of EPCs was restored, the expression of mitochondrial Drp1, Mff and Fis1 protein was decreased, the levels of mtROS and ATP were decreased, and mitochondrial function was improved. Meanwhile, the expression of AMPK and p-AMPK increased. The improvement effects of GSC on aging and mitochondrial morphology and function were were hindered after adding AMPK inhibitor. In vivo, GSC improved EPCs efficiency, ameliorated aortic structural disorder and decreased IMT in aging mice. The serum SOD level increased and MDA level decreased, indicating the improvement of antioxidant capacity. Increased NO content and ET-1 content suggested improvement of vascular endothelial function. The changes observed in SOD and MMP-2 suggested a reduction in vascular stiffness and the degree of vascular damage. The decreased expression of P21 and P53 indicates the delay of vascular senescence.

背景:在衰老过程中,内皮祖细胞(EPCs)的数量和功能活性会受损,导致移植效果不理想。以往的研究表明,益气补血汤(人参-三七-川芎汤)具有抗血管衰老的作用。本研究旨在评估人参三七川芎汤对D-半乳糖(D-gal)诱导的衰老的影响及其内在机制:方法:细胞衰老相关标志物 P16、P21、P53、AMPK 和 p-AMPK 的水平通过 Western 印迹分析(WB)进行检测。SA-β-gal染色用于评估细胞衰老。EPCs功能通过CCK-8、Transwell细胞迁移和细胞粘附试验进行检测。共聚焦显微镜检测线粒体的形态变化。利用 WB 和 RT-qPCR 检测线粒体中线粒体融合裂变 Drp1、Mff、Fis1、Mfn1、Mfn2 和 Opa1 的蛋白和 mRNA 表达。使用 IF 检测 EPCs 的线粒体膜电位、mtROS 和 ATP。用 H&E 染色观察主动脉的病理变化和内径。用免疫组化(IHC)方法检测主动脉中 AGEs、MMP-2 和 VEGF 的表达。用 SOD、MDA 和 NO 试剂盒检测血清中 SOD、MDA、NO 和 ET-1 的水平:结果:在体外,GSC能改善D-gal诱导的EPCs衰老,并减少P16、P21和P53的表达。EPCs 的线粒体形态得到恢复,线粒体 Drp1、Mff 和 Fis1 蛋白表达减少,mtROS 和 ATP 水平下降,线粒体功能得到改善。同时,AMPK 和 p-AMPK 的表达增加。加入 AMPK 抑制剂后,GSC 对衰老和线粒体形态及功能的改善作用受到阻碍。在体内,GSC 提高了 EPCs 的效率,改善了衰老小鼠的主动脉结构紊乱并降低了 IMT。血清 SOD 水平升高,MDA 水平降低,表明抗氧化能力提高。NO含量和ET-1含量的增加表明血管内皮功能得到改善。观察到的 SOD 和 MMP-2 的变化表明血管僵硬度和血管损伤程度有所降低。P21 和 P53 表达的减少表明血管衰老的延迟。
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引用次数: 0
Integrated serum pharmacochemistry, 16S rDNA sequencing, and metabolomics to reveal the material basis and mechanism of Shouhui Tongbian capsule against diphenoxylate-induced slow transit constipation in rats. 综合血清药理、16S rDNA测序和代谢组学揭示寿辉通便胶囊防治苯氧乙酸所致大鼠慢传输性便秘的物质基础和机制
IF 5.3 3区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE Pub Date : 2024-10-11 DOI: 10.1186/s13020-024-01015-8
Jiaying Yang, He Xiao, Jingchun Yao, Pin Zhang, Bojiao Yi, Zhengyu Fang, Na Guo, Yongxia Guan, Guimin Zhang

Background: Slow transit constipation (STC) is highly prevalent and has rising incidence. Shouhui Tongbian capsule (SHTB) is a traditional Chinese Medicine formula with extensive and highly efficacious usage in STC treatment, however, its mechanism of action, especially the regulation of microbiome and lipid metabolites, remains unclear.

Methods: After quality control of SHTB using LC‒MS to obtain its material basis, we tried to elucidate the cohesive modulatory network of SHTB against STC using hyphenated methods from microbiomics, lipidomics, mass spectrometry imaging (MSI) and molecular methods.

Results: SHTB could repair intestinal barrier damage, reduce systemic inflammation and increase intestinal motility in a diphenoxylate-induced STC rat model. Based on 16S rDNA sequencing results, SHTB rehabilitated the abnormal changes in Alloprevotella, Coprococcus, Marvinbryantia, etc., which were associated with STC symptoms. Meanwhile, microbial functional prediction showed that lipid metabolism was improved with SHTB administration. The differential lipids, including fatty acids, lysophosphatidylcholine, phosphatidylcholine, sphingomyelin triglyceride and ceramide, that are closely related to STC disease and SHTB efficacy. Furthermore, SHTB significantly reversed the abnormal expression of these key target enzymes in colon samples, including CTP-phosphocholine cytidylyltransferase, CTP-phosphoethanolamine cytidylyltransferase, phosphatidic acid phosphatase, acid sphingomyelinase etc. CONCLUSIONS: Combined analysis demonstrated that SHTB reducing lipid accumulation and recovery of intestinal microbial homeostasis was the critical mechanism by which SHTB treats STC.

背景:慢传输型便秘(STC)发病率高且呈上升趋势。然而,其作用机制,尤其是对微生物组和脂质代谢产物的调控机制仍不清楚:方法:通过LC-MS对SHTB进行质量控制以获得其物质基础后,我们尝试从微生物组学、脂质组学、质谱成像(MSI)和分子方法等方面综合阐明SHTB对STC的内聚调控网络:结果:在二苯氧胺诱导的 STC 大鼠模型中,SHTB 可修复肠屏障损伤、减轻全身炎症反应并增加肠道蠕动。根据 16S rDNA 测序结果,SHTB 可修复与 STC 症状相关的 Alloprevotella、Coprococcus、Marvinbryantia 等微生物的异常变化。同时,微生物功能预测显示,服用 SHTB 后,脂质代谢得到改善。差异脂质包括脂肪酸、溶血磷脂酰胆碱、磷脂酰胆碱、鞘磷脂甘油三酯和神经酰胺,它们与 STC 疾病和 SHTB 的疗效密切相关。此外,SHTB 还能明显逆转结肠样本中这些关键靶酶的异常表达,包括 CTP-磷脂酰胆碱胞苷键转氨酶、CTP-磷脂酰乙醇胺胞苷键转氨酶、磷脂酸磷酸酶、酸性鞘磷脂酶等。结论:综合分析表明,SHTB 减少脂质积累和恢复肠道微生物平衡是 SHTB 治疗 STC 的关键机制。
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引用次数: 0
Identification of molecular targets of Hypericum perforatum in blood for major depressive disorder: a machine-learning pharmacological study. 鉴定血液中治疗重度抑郁症的贯叶连翘分子靶标:一项机器学习药理学研究。
IF 5.3 3区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE Pub Date : 2024-10-09 DOI: 10.1186/s13020-024-01018-5
Zewen Xu, Ayana Meegol Rasteh, Angela Dong, Panpan Wang, Hengrui Liu

Background: Major depressive disorder (MDD) is one of the most common psychiatric disorders worldwide. Hypericum perforatum (HP) is a traditional herb that has been shown to have antidepressant effects, but its mechanism is unclear. This study aims to identify the molecular targets of HP for the treatment of MDD.

Methods: We performed differential analysis and weighted gene co-expression network analysis (WGCNA) with blood mRNA expression cohort of MDD and healthy control to identify DEGs and significant module genes (gene list 1). Three databases, CTD, DisGeNET, and GeneCards, were used to retrieve MDD-related gene intersections to obtain MDD-predicted targets (gene list 2). The validated targets were retrieved from the TCMSP database (gene list 3). Based on these three gene lists, 13 key pathways were identified. The PPI network was constructed by extracting the intersection of genes and HP-validated targets on all key pathways. Key therapeutic targets were obtained using MCODE and machine learning (LASSO, SVM-RFE). Clinical diagnostic assessments (Nomogram, Correlation, Intergroup expression), and gene set enrichment analysis (GSEA) were performed for the key targets. In addition, immune cell analysis was performed on the blood mRNA expression cohort of MDD to explore the association between the key targets and immune cells. Finally, molecular docking prediction was performed for the targets of HP active ingredients on MDD.

Results: Differential expression analysis and WGCNA module analysis yielded 933 potential targets for MDD. Three disease databases were intersected with 982 MDD-predicted targets. The TCMSP retrieved 275 valid targets for HP. Separate enrichment analysis intersected 13 key pathways. Five key targets (AKT1, MAPK1, MYC, EGF, HSP90AA1) were finally screened based on all enriched genes and HP valid targets. Combined with the signaling pathway and immune cell analysis suggested the effect of peripheral immunity on MDD and the important role of neutrophils in immune inflammation. Finally, the binding of HP active ingredients (quercetin, kaempferol, and luteolin) and all 5 key targets were predicted based on molecular docking.

Conclusions: The active constituents of Hypericum perforatum can act on MDD and key targets and pathways of this action were identified.

背景:重度抑郁症(MDD)是全球最常见的精神疾病之一。贯叶连翘(HP)是一种传统草药,已被证明具有抗抑郁作用,但其机制尚不清楚。本研究旨在确定金丝桃治疗多发性抑郁症的分子靶点:我们对 MDD 和健康对照组的血液 mRNA 表达进行了差异分析和加权基因共表达网络分析(WGCNA),以确定 DEGs 和重要的模块基因(基因列表 1)。利用 CTD、DisGeNET 和 GeneCards 三个数据库检索 MDD 相关基因的交叉点,从而获得 MDD 预测靶点(基因列表 2)。从 TCMSP 数据库(基因列表 3)中检索了已验证的靶点。根据这三个基因列表,确定了 13 条关键通路。通过提取所有关键通路上基因与 HP 验证靶点的交叉点,构建了 PPI 网络。利用 MCODE 和机器学习(LASSO、SVM-RFE)获得了关键治疗靶点。对关键靶点进行了临床诊断评估(提名图、相关性、组间表达)和基因组富集分析(GSEA)。此外,还对 MDD 的血液 mRNA 表达队列进行了免疫细胞分析,以探索关键靶点与免疫细胞之间的关联。最后,对惠普活性成分在MDD上的靶点进行了分子对接预测:差异表达分析和 WGCNA 模块分析得出了 933 个 MDD 潜在靶点。三个疾病数据库与 982 个 MDD 预测靶点进行了交叉。TCMSP检索到275个有效的HP靶点。单独的富集分析发现了 13 条关键通路。根据所有富集基因和 HP 有效靶点,最终筛选出 5 个关键靶点(AKT1、MAPK1、MYC、EGF、HSP90AA1)。结合信号通路和免疫细胞分析,表明了外周免疫对 MDD 的影响以及中性粒细胞在免疫炎症中的重要作用。最后,根据分子对接预测了金丝桃活性成分(槲皮素、山奈酚和木犀草素)与所有 5 个关键靶点的结合:结论:贯叶连翘的活性成分可作用于MDD,并确定了这一作用的关键靶点和途径。
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引用次数: 0
Molecular quantification of fritillariae cirrhosae bulbus and its adulterants. 对蝙蝠蛾及其掺假物进行分子定量。
IF 5.3 3区 医学 Q1 INTEGRATIVE & COMPLEMENTARY MEDICINE Pub Date : 2024-10-08 DOI: 10.1186/s13020-024-01010-z
Ziyi Liu, Yifei Pei, Tiezhu Chen, Zemin Yang, Wenjun Jiang, Xue Feng, Xiwen Li

Background: Fritillariae Cirrhosae Bulbus (FCB) is frequently adulterated with its closely related species due to personal or non-man made factors, leading to alterations in the composition of its constituents and compromising the efficacy of its products.

Methods: The specific single nucleotide polymorphisms (SNPs) were screened by comparing candidate barcodes of Fritillaria and verified by amplification and sequencing. Herb molecular quantification (Herb-Q) was established by detecting specific SNPs, and the methodological validation was performed. Quantitative standard curves were established for FCB mixed with each adulterated species, and the quantitative validity of this method was verified based on external standard substance. In addition, eight commercial Shedan Chuanbei capsules (SDCBs) randomly selected were detected.

Results: FCB and its five adulterants can be distinguished based on the ITS 341 site. The methodological investigation of Herb-Q shows optimal accuracy, and repeatability, which exhibited good linearity with an R2 of 0.9997 (> 0.99). An average bias in quantitative validity was 5.973% between the measured and actual values. Four of eight commercial SDCBs were adulterated with F. ussuriensis or F. thunbergia with adulteration levels ranging from 9 to 15% of the total weight.

Conclusion: This study confirmed that Herb-Q can quantitatively detect both the mixed herbs and Chinese patent medicines (CPMs) containing FCB with high reproducibility and accuracy. This method provides technical support for market regulation and helps safeguard patient rights.

背景:Fritillariae Cirrhosae Bulbus(FCB)经常因人为或非人为因素与近缘物种掺假,导致其成分发生变化,影响其产品的功效:方法:通过比较候选条形码筛选特定的单核苷酸多态性(SNPs),并通过扩增和测序进行验证。通过检测特定 SNPs 建立了草本植物分子定量方法(Herb-Q),并进行了方法验证。建立了与各掺假品种混合的 FCB 定量标准曲线,并根据外部标准物质验证了该方法的定量有效性。此外,还对随机抽取的 8 种商品化的舍旦川贝胶囊(SDCB)进行了检测:结果:根据ITS 341位点可以区分FCB及其5种掺假物质。Herb-Q的方法学调查显示其准确度和重复性最佳,线性关系良好,R2为0.9997(> 0.99)。测量值与实际值之间的定量有效性平均偏差为 5.973%。在 8 种商品 SDCB 中,有 4 种掺杂了 F. ussuriensis 或 F. thunbergia,掺杂量占总重量的 9% 至 15%:本研究证实,Herb-Q 能定量检测含有 FCB 的混合药材和中成药,且重现性和准确性高。该方法为市场监管提供了技术支持,有助于保障患者权益。
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Chinese Medicine
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