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Evaluation of Wound Healing Potential of Root Bark Extract of Berberis aristata and Molecular Docking Analysis of Berberis Phytoconstituents. 小檗根皮提取物创面愈合潜力评价及小檗植物成分分子对接分析。
Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1570163820666230221154851
Alankar Shrivastav, Arun Kumar Mishra, Ashessh Kumar Gupta

Introduction: The root bark of Berberis aristata has been utilized by indigenous peoples for wound treatment for centuries. The mature root barks are crushed into a paste and applied to the wound's surface.

Objective: The focus of this research is to analyse the wound healing activities of an ethanolic extract of Berberis aristata, as well as to use molecular docking to establish the likely mechanism of the potent phytochemical. There is no scientific evidence to support the usage of root bark extract of Berberis aristata.

Methods: The Herbal ointment, which comprises (1%, 2%, and 4% w/w) ethanolic extract of root bark, was developed to test the wound healing ability of incision and excision wounds, and the molecular mechanism was established using Auto-Dock software.

Results: Epithelization stage, wound index, % wound contraction area, hydroxyproline content, DNA estimate, and histopathological assessments were performed on the incision wound model. Tensile strength was assessed in an excision wound model. TLC was used to identify the samples after successive extractions with different solvents based on polarity.

Conclusion: Berberine and tetrahydropalmatine were major active phytoconstituent found in root barks of Berberis aristata as secondary metabolites. Animals treated with 4% w/w formulation demonstrated considerable wound contraction, epithelization time, and wound index in the excision model. In contrast, to control and standardize the concentrations of hydroxyproline, total amino acids, and DNA in recovering tissue were higher. At 4% w/w extract formulation, the parameters studied indicated a substantial result. Berberine and tetrahydropalmatine, active metabolites which are present in the ethanolic extract of Berberis aristata, were found to be responsible for wound healing. Based on ligand interactions, the findings verified Berberis aristata ethnomedicinal claim in a wound healing capacity.

几个世纪以来,小檗的根皮一直被土著人民用于伤口治疗。成熟的根皮被碾碎成膏状,涂在伤口表面。目的:本研究的重点是分析小檗醇提物的创面愈合活性,并利用分子对接方法建立其作用机制。没有科学证据支持小檗根皮提取物的使用。方法:以根皮乙醇提取物(1%、2%、4% w/w)配制中药软膏,检测切口和切除创面的创面愈合能力,并利用Auto-Dock软件建立分子机制。结果:对切口创面模型进行上皮分期、创面指数、创面收缩面积%、羟脯氨酸含量、DNA估计及组织病理学评估。在切除伤口模型中评估拉伸强度。采用TLC法对不同极性溶剂连续提取后的样品进行鉴别。结论:小檗碱和四氢巴马汀是小檗根皮次生代谢产物中的主要活性成分。以4% w/w配方处理的动物在切除模型中表现出相当大的伤口收缩、上皮化时间和伤口指数。对照和标准化后,恢复组织中羟脯氨酸、总氨基酸和DNA的浓度较高。在4% w/w的萃取剂配方下,所研究的参数显示出实质性的结果。小檗碱和四氢棕榈碱,活性代谢物存在于小檗的乙醇提取物,被发现负责伤口愈合。基于配体的相互作用,研究结果证实了小檗在伤口愈合能力方面的民族医学主张。
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引用次数: 0
Protective Impact of Vanillic Acid on Lipid Profile and Lipid Metabolic Enzymes in Diabetic Hypertensive Rat Model Generated by a High-Fat Diet. 香草酸对高脂饮食引起的糖尿病高血压模型大鼠血脂及脂质代谢酶的保护作用
Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1570163820666230224100643
Natarajan Ashokkumar, Kolanji Vinothiya

Introduction: Diabetes is the most common component of metabolic syndrome, including abdominal obesity, insulin resistance, hypertension, and dyslipoproteinemia.

Objective: This study aims to determine whether vanillic acid has antihyperlipidemic properties in diabetic hypertensive rats.

Methods: For this study healthy male albino Wister rats (180-220 gm) were selected. A 20-week highfat diet (HFD) was given to produce diabetic hypertension in Wister rats. Control and diabetic hypertensive rats were treated with vanillic acid. Vanillic acid effects on lipid profiles (cholesterol, triglycerides, phospholipids, free fatty acids, high-density lipoproteins (HDL)) and lipid metabolizing enzymes LPL, LCAT, and HMG CoA reductase studied by a conventional method. To understand the effect of vanillic acid control, experimental rat lipid and metabolic enzymes were studied and treated and controlled animal liver tissues were observed using the different histology staining agents.

Results: Vanillic acid caused considerable lipid profile reductions except for HDL and increased plasma HDL levels. After eight weeks of vanillic acid administration also boosts lipid marker enzyme activity (HMG CoA reductase, LPL, and LCAT). In addition, vanillic acid reduces the accumulation of collagen in liver tissues.

Conclusion: These research studies suggest that vanillic acid has antihyperlipidemic effects in diabetic hypertensive rats fed an HFD.

糖尿病是代谢综合征最常见的组成部分,包括腹部肥胖、胰岛素抵抗、高血压和脂蛋白异常血症。目的:研究香草酸对糖尿病高血压大鼠的降血脂作用。方法:选择健康雄性白化Wister大鼠(180 ~ 220 gm)。采用高脂饮食(HFD)治疗Wister大鼠糖尿病性高血压20周。对照组和糖尿病高血压大鼠给予香草酸治疗。香草酸对脂质谱(胆固醇、甘油三酯、磷脂、游离脂肪酸、高密度脂蛋白(HDL))和脂质代谢酶LPL、LCAT和HMG辅酶a还原酶的影响通过传统方法研究。为了了解香草酸的控制作用,研究了实验大鼠的脂质和代谢酶,用不同的组织学染色剂对对照动物肝组织进行了观察。结果:香草酸引起了除HDL和血浆HDL水平升高外的相当大的脂质谱降低。8周后,香草酸也能提高脂质标记酶活性(HMG辅酶a还原酶,LPL和LCAT)。此外,香草酸可以减少肝组织中胶原蛋白的积累。结论:香草酸对糖尿病高血压大鼠有降血脂作用。
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引用次数: 2
Small Angle Neutron Scattering in Drug Discovery Research: A Novel Tool for Advanced Study of Structures of Biological Macromolecules. 小角中子散射在药物发现研究中的应用:生物大分子结构深入研究的新工具。
Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1570163820666230515162614
Lokesh Adhikari, Himanshu Mishra, Mona Semalty, Ajay Semalty

Small Angle Neutron Scattering (SANS) is a powerful and novel tool for the study of soft condensed matter, including the microscopic and nanomaterials used for drug discovery and delivery. The sample is exposed to a neutron beam, and neutron scattering occurs, which is studied as a function of the scattering angle to deduce a variety of information about the dynamics and structure of the material. The technique is becoming very popular in biomedical research to investigate the various aspects of structural biology. The low-resolution information on large heterogeneous, solubilized biomacromolecular complexes in solution is obtained with the use of deuterium labelling and solvent contrast variation. The article reviews the basics of the SANS technique, its applications in drug delivery research, and its current status in biomedical research. The article covers and overviews the precise characterization of biological structures (membranes, vesicles, proteins in solution), mesoporous structures, colloids, and surfactants, as well as cyclodextrin complexes, lipid complexes, polymeric nanoparticles, etc., with the help of neutron scattering. SANS is continuously evolving as a medium for exploring the complex world of biomolecules, providing information regarding the structure, composition, and arrangement of various constituents. With improving modelling software automation in data reduction and the development of new neutron research facilities, SANS can be expected to remain mainstream for biomedical research.

小角中子散射(SANS)是研究软凝聚态物质的一种强大而新颖的工具,包括用于药物发现和递送的微观和纳米材料。将样品暴露在中子束下,中子发生散射,研究了散射角的函数,从而推断出材料的动力学和结构的各种信息。该技术在生物医学研究中非常流行,用于研究结构生物学的各个方面。利用氘标记和溶剂对比变化获得了溶液中大型非均相、可溶解的生物大分子复合物的低分辨率信息。本文综述了SANS技术的基本原理、在给药研究中的应用以及在生物医学研究中的现状。本文涵盖并概述了生物结构(膜、囊泡、溶液中的蛋白质)、介孔结构、胶体和表面活性剂,以及环糊精配合物、脂质配合物、聚合物纳米颗粒等的精确表征。SANS作为一种探索生物分子复杂世界的媒介不断发展,提供有关各种成分的结构、组成和排列的信息。随着数据简化建模软件自动化的改进和新中子研究设施的发展,SANS有望成为生物医学研究的主流。
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引用次数: 0
Assessment of Structural Basis for Thiazolopyridine Derivatives as DNA Gyrase-B Inhibitors. 噻唑吡啶衍生物作为DNA gyase - b抑制剂的结构基础评价。
Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1570163820666230222151558
Vishal P Zambre, Nilesh N Petkar, Vishal P Dewoolkar, Swapnali V Bhadke, Sanjay D Sawant

Background: Tuberculosis (TB) is one of the leading causes of death in the post-COVID- 19 era. It has been observed that there is a devastating condition with a 25-30% increase in TB patients. DNA gyrase B isoform has proved its high potential to be a therapeutically effective target for developing newer and safer anti-TB agents.

Objective: This study aims to identify minimum structural requirements for the optimization of thiazolopyridine derivatives having DNA gyrase inhibitory activities. Moreover, developed QSAR models could be used to design new thiazolopyridine derivatives and predict their DNA gyrase B inhibitory activity before synthesis.

Methods: 3D-QSAR and Group-based QSAR (G-QSAR) methodologies were adopted to develop accurate, reliable, and predictive QSAR models. Statistical methods such as kNN-MFA SW-FB and MLR SW-FB were used to correlate dependent parameters with descriptors. Both models were thoroughly validated for internal and external predictive abilities.

Results: The 3D-QSAR model significantly correlated steric and electrostatic descriptors with q2 0.7491 and predicted r2 0.7792. The G-QSAR model showed that parameters such as SsOHE-index, slogP, ChiV5chain, and T_C_C_3 were crucial for optimizing thiazolopyridine derivatives as DNA gyrase inhibitors. The 3D-QSAR model was interpreted extensively with respect to 3D field points, and the pattern of fragmentation was studied in the G-QSAR model.

Conclusion: The 3D-QSAR and G-QSAR models were found to be highly predictive. These models could be useful for designing potent DNA gyrase B inhibitors before their synthesis.

背景:结核病是后covid - 19时代的主要死亡原因之一。据观察,结核病患者增加了25-30%,这是一种毁灭性的情况。DNA回转酶B异构体已被证明具有很高的潜力,可作为开发更新和更安全的抗结核药物的治疗有效靶点。目的:确定具有DNA旋切酶抑制活性的噻唑吡啶衍生物的最低结构要求。此外,所建立的QSAR模型可用于设计新的噻唑吡啶衍生物,并在合成前预测其DNA旋切酶B抑制活性。方法:采用3D-QSAR和Group-based QSAR (G-QSAR)方法建立准确、可靠、可预测的QSAR模型。使用kNN-MFA SW-FB和MLR SW-FB等统计方法将依赖参数与描述符关联起来。两个模型的内部和外部预测能力都得到了彻底的验证。结果:3D-QSAR模型预测立体和静电描述符的相关系数为q2 0.7491,预测r2 0.7792。G-QSAR模型表明,ssohe指数、logp、chiv5链和T_C_C_3等参数对噻唑吡啶衍生物作为DNA回转酶抑制剂的优化至关重要。针对三维场点对3D- qsar模型进行了广泛的解译,并对G-QSAR模型中的破碎模式进行了研究。结论:3D-QSAR和G-QSAR模型具有较高的预测能力。这些模型可用于在DNA回转酶B抑制剂合成前设计有效的DNA回转酶B抑制剂。
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引用次数: 0
Molecular Docking and Simulation Studies of Flavanone and its Derived Compounds on PI3K-AKT Pathway Targeting against Cancer. 黄酮及其衍生物在PI3K-AKT通路上靶向肿瘤的分子对接与模拟研究。
Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1570163819666220526150152
Sagar Nagare, Kiran Bharat Lokhande, K Venkateswara Swamy

Background: Flavanone compounds and their related derivatives are reported in controlling cell cycle, angiogenesis, and metastasis. Phosphoinositide 3-kinases is a major drug target.

Methods: Crystalize structure of Phosphoinositide 3-kinases-Akt complex obtained from Protein Data Bank (PDBID: 3CQW) was selected as receptor protein and the binding site has been identified with PDBSum Database. Flavanone and its derivatives were retrieved using freely available existing drug databases like Drug Bank, Zinc, and PubChem. New derivatives were modified by altering the flavanone at Beta ring position. This modification would help in maintaining stable structural conformation and retaining better anticancer activity. Retrieved Flavanone derivatives from the drug database were docked against 3CQW Protein with the advanced docking tool FlexX. MD simulations of the best molecule were performed with the Desmond package by calculating nonbonding interactions such as electrostatic interaction and hydrogen bond stable and favorable conformations were calculated.

Results: These interaction studies would help identify new potential drug candidates with the help of computer-aided drug designing techniques.

Conclusion: Natural chemicals have received a lot of attention because of their vast range of applications in human health and disease prevention without creating any negative side effects. Molecular docking is an essential approach for drug development since it allows for effective screening of potential therapeutics in a short time. We hypothesized in this paper that natural flavanone and its derivatives may be effective as Akt-1 inhibitors.

背景:黄酮类化合物及其相关衍生物被报道在控制细胞周期、血管生成和转移方面具有重要作用。磷酸肌肽3-激酶是主要的药物靶点。方法:选择从Protein Data Bank (PDBID: 3CQW)中获得的磷酸肌苷3-激酶- akt复合物的结晶结构作为受体蛋白,并通过PDBSum数据库确定其结合位点。黄烷酮及其衍生物从现有的免费药物数据库如drug Bank, Zinc和PubChem中检索。通过改变黄酮在β环上的位置来修饰新的衍生物。这种修饰将有助于保持稳定的结构构象,并保持更好的抗癌活性。从药物数据库中检索到黄酮衍生物,使用先进的对接工具FlexX与3CQW蛋白对接。利用Desmond包对最佳分子进行了动力学模拟,计算了静电相互作用等非键相互作用,计算了氢键的稳定构象和有利构象。结果:这些相互作用的研究有助于在计算机辅助药物设计技术的帮助下发现新的潜在候选药物。结论:天然化学品因其在人类健康和疾病预防方面的广泛应用而不产生任何负面副作用而受到广泛关注。分子对接是一种重要的药物开发方法,因为它可以在短时间内有效地筛选潜在的治疗方法。我们在本文中假设天然黄酮及其衍生物可能是有效的Akt-1抑制剂。
{"title":"Molecular Docking and Simulation Studies of Flavanone and its Derived Compounds on PI3K-AKT Pathway Targeting against Cancer.","authors":"Sagar Nagare,&nbsp;Kiran Bharat Lokhande,&nbsp;K Venkateswara Swamy","doi":"10.2174/1570163819666220526150152","DOIUrl":"https://doi.org/10.2174/1570163819666220526150152","url":null,"abstract":"<p><strong>Background: </strong>Flavanone compounds and their related derivatives are reported in controlling cell cycle, angiogenesis, and metastasis. Phosphoinositide 3-kinases is a major drug target.</p><p><strong>Methods: </strong>Crystalize structure of Phosphoinositide 3-kinases-Akt complex obtained from Protein Data Bank (PDBID: 3CQW) was selected as receptor protein and the binding site has been identified with PDBSum Database. Flavanone and its derivatives were retrieved using freely available existing drug databases like Drug Bank, Zinc, and PubChem. New derivatives were modified by altering the flavanone at Beta ring position. This modification would help in maintaining stable structural conformation and retaining better anticancer activity. Retrieved Flavanone derivatives from the drug database were docked against 3CQW Protein with the advanced docking tool FlexX. MD simulations of the best molecule were performed with the Desmond package by calculating nonbonding interactions such as electrostatic interaction and hydrogen bond stable and favorable conformations were calculated.</p><p><strong>Results: </strong>These interaction studies would help identify new potential drug candidates with the help of computer-aided drug designing techniques.</p><p><strong>Conclusion: </strong>Natural chemicals have received a lot of attention because of their vast range of applications in human health and disease prevention without creating any negative side effects. Molecular docking is an essential approach for drug development since it allows for effective screening of potential therapeutics in a short time. We hypothesized in this paper that natural flavanone and its derivatives may be effective as Akt-1 inhibitors.</p>","PeriodicalId":10858,"journal":{"name":"Current drug discovery technologies","volume":"20 1","pages":"e260522205302"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9832799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Hesperidin: A Potential Therapeutic Agent against COVID-19. 橙皮苷:新型冠状病毒肺炎的潜在治疗剂
Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1570163820666221017111556
Ashwani K Dhingra, Bhawna Chopra, Vaibhav Rathi, Sameer Sapra

COVID-19, aka Coronavirus Disease 2019, triggered by new severe acute respiratory syndrome coronavirus-2 or SARS-CoV-2, is now a public health emergency due to its rapid spread, high transmission efficiency, and severe viral pandemic that is significantly increasing the number of patients and associated deaths. Currently, no specific treatment is available for this highly contagious virus. The unavailability of effective and specific treatments and the severity of this epidemic situation potentiate medicinal chemists' in supporting new prophylactic or therapeutic interventions against COVID-19. This study discusses the therapeutic potential of hesperidin, a traditionally used herbal medicine with an exceptional safety profile. Recent studies on hesperidin advocate its promising potential in the prevention and management of COVID-19. This paper also discusses the recent clinical studies based on the previously documented antiviral activity of hesperidin. Herein, we propose the detailed preclinical and clinical manifestations of hesperidin based on its multifaceted bioactivities to develop a novel anti-COVID-19 lead.

由新型严重急性呼吸系统综合征冠状病毒-2或SARS-CoV-2引发的COVID-19,即2019年冠状病毒病,由于其传播迅速、传播效率高,以及严重的病毒大流行,导致患者人数和相关死亡人数显著增加,现已成为突发公共卫生事件。目前,尚无针对这种高传染性病毒的特异性治疗方法。由于缺乏有效和特异性的治疗方法,加上疫情的严重性,药物化学家有能力支持针对COVID-19的新的预防性或治疗性干预措施。本研究讨论了橙皮苷的治疗潜力,橙皮苷是一种传统使用的草药,具有特殊的安全性。近年来对橙皮苷的研究表明橙皮苷在COVID-19的预防和管理中具有广阔的潜力。本文还对近年来橙皮苷抗病毒活性的临床研究进行了讨论。本文基于橙皮苷的多方面生物活性,提出橙皮苷的临床前和临床表现,以开发新型抗covid -19先导物。
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引用次数: 2
In Silico Analysis of the Antidepressant Fluoxetine and Related Drugs at SARS-CoV-2 Main Protease (Mpro) and Papain-like Protease (PLpro). 抗抑郁药氟西汀及相关药物对SARS-CoV-2主蛋白酶(Mpro)和木瓜蛋白酶(PLpro)的影响
Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1570163819666221010115118
Pedro José Tronco Pauletto, Folorunsho Bright Omage, Cássia Pereira Delgado, Pablo Andrei Nogara, João Batista Teixeira Rocha
BACKGROUND SARS-CoV-2 main protease (Mpro or 3CLpro) and papain-like protease (PLpro) are common viral targets for repurposed drugs to combat COVID-19 disease. Recently, several anti-depressants (such as fluoxetine, venlafaxine and citalopram) belonging to the Selective Serotonin Reuptake Inhibitors (SSRIs) and the Serotonin-Norepinephrine Reuptake Inhibitors (SNRI) classes have been shown to in vitro inhibit viral replication. AIM Investigate a possible action of fluoxetine and derivatives on SARS-CoV-2 protease sites. METHODS molecular docking was performed using AutoDock Vina. Both proteases structures and different drugs conformations were used to explore the possibility of SARS-CoV-2 inhibition on a Mpro or PLpro related pathway. Drug structures were obtained by optimization with the Avogadro software and MOPAC using PM6 method. Results were analysed on Discovery Studio Visualizer. RESULTS The results indicated that Mpro interacted in a thermodynamically favorable way with fluoxetine, venlafaxine, citalopram, atomoxetine, nisoxetine and norfluoxetine in the region of the active site, whether PLpro conformers did not come close to active site. CONCLUSION In an in silico perspective, it is likely that the SSRIs and other anti-depressants could interact with Mpro and cause the enzyme to malfunction. Unfortunately, the same drugs did not present similar results on PLpro crystal, therefore no inhibition is expected on an in vitro trial. Anyway, in vitro test are necessary for the better understanding the links between SARS-CoV-2 proteases and anti-depressants.
背景:SARS-CoV-2主要蛋白酶(Mpro或3CLpro)和木瓜蛋白酶(PLpro)是抗COVID-19疾病重组药物常见的病毒靶点。最近,几种抗抑郁药(如氟西汀、文拉法辛和西酞普兰)属于选择性5 -羟色胺再摄取抑制剂(SSRIs)和5 -羟色胺-去甲肾上腺素再摄取抑制剂(SNRI)类,已被证明在体外抑制病毒复制。目的:探讨氟西汀及其衍生物对SARS-CoV-2蛋白酶位点的可能作用。方法:使用AutoDock Vina进行分子对接。研究人员利用蛋白酶结构和不同的药物构象来探索Mpro或PLpro相关途径抑制SARS-CoV-2的可能性。采用PM6方法,利用Avogadro软件和MOPAC对药物结构进行优化。结果在Discovery Studio Visualizer上进行了分析。结果:结果表明,无论PLpro构象是否靠近活性位点,Mpro均能与氟西汀、文拉法辛、西酞普兰、托莫西汀、尼索西汀和去甲氟西汀在活性位点区域发生良好的热力学相互作用。结论:从硅的角度来看,SSRIs和其他抗抑郁药可能与Mpro相互作用并导致酶功能障碍。不幸的是,相同的药物对PLpro晶体没有类似的结果,因此,在体外试验中没有预期的抑制作用。无论如何,为了更好地了解SARS-CoV-2蛋白酶和抗抑郁药之间的联系,体外测试是必要的。
{"title":"<i>In Silico</i> Analysis of the Antidepressant Fluoxetine and Related Drugs at SARS-CoV-2 Main Protease (M<sup>pro</sup>) and Papain-like Protease (PL<sup>pro</sup>).","authors":"Pedro José Tronco Pauletto,&nbsp;Folorunsho Bright Omage,&nbsp;Cássia Pereira Delgado,&nbsp;Pablo Andrei Nogara,&nbsp;João Batista Teixeira Rocha","doi":"10.2174/1570163819666221010115118","DOIUrl":"https://doi.org/10.2174/1570163819666221010115118","url":null,"abstract":"BACKGROUND SARS-CoV-2 main protease (Mpro or 3CLpro) and papain-like protease (PLpro) are common viral targets for repurposed drugs to combat COVID-19 disease. Recently, several anti-depressants (such as fluoxetine, venlafaxine and citalopram) belonging to the Selective Serotonin Reuptake Inhibitors (SSRIs) and the Serotonin-Norepinephrine Reuptake Inhibitors (SNRI) classes have been shown to in vitro inhibit viral replication. AIM Investigate a possible action of fluoxetine and derivatives on SARS-CoV-2 protease sites. METHODS molecular docking was performed using AutoDock Vina. Both proteases structures and different drugs conformations were used to explore the possibility of SARS-CoV-2 inhibition on a Mpro or PLpro related pathway. Drug structures were obtained by optimization with the Avogadro software and MOPAC using PM6 method. Results were analysed on Discovery Studio Visualizer. RESULTS The results indicated that Mpro interacted in a thermodynamically favorable way with fluoxetine, venlafaxine, citalopram, atomoxetine, nisoxetine and norfluoxetine in the region of the active site, whether PLpro conformers did not come close to active site. CONCLUSION In an in silico perspective, it is likely that the SSRIs and other anti-depressants could interact with Mpro and cause the enzyme to malfunction. Unfortunately, the same drugs did not present similar results on PLpro crystal, therefore no inhibition is expected on an in vitro trial. Anyway, in vitro test are necessary for the better understanding the links between SARS-CoV-2 proteases and anti-depressants.","PeriodicalId":10858,"journal":{"name":"Current drug discovery technologies","volume":"20 2","pages":"e101022209771"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9780104","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Automating Drug Discovery using Machine Learning. 使用机器学习实现药物发现自动化。
Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1570163820666230607163313
Ali K Abdul Raheem, Ban N Dhannoon

Drug discovery and development have been sped up because of the advances in computational science. In both industry and academics, artificial intelligence (AI) has been widely used. Machine learning (ML), an important component of AI, has been used in a variety of domains, including data production and analytics. One area that stands to gain significantly from this achievement of machine learning is drug discovery. The process of bringing a new drug to market is complicated and time-consuming. Traditional drug research takes a long time, costs a lot of money, and has a high failure rate. Scientists test millions of compounds, but only a small number make it to preclinical or clinical testing. It is crucial to embrace innovation, especially automated technologies, to lessen the complexity involved in drug research and avoid the high cost and lengthy process of bringing a medicine to the market. A rapidly developing field, a branch of artificial intelligence called machine learning (ML), is being used by numerous pharmaceutical businesses. Automating repetitive data processing and analysis processes can be achieved by incorporating ML methods into the drug development process. ML techniques can be used at numerous stages of the drug discovery process. In this study, we will discuss the steps of drug discovery and methods of machine learning that can be applied in these steps, as well as give an overview of each of the research works in this field.

由于计算科学的进步,药物的发现和开发速度加快了。人工智能在工业界和学术界都得到了广泛的应用。机器学习(ML)是人工智能的一个重要组成部分,已被用于各种领域,包括数据生产和分析。从机器学习的这一成就中获得重大收获的一个领域是药物发现。将新药推向市场的过程既复杂又耗时。传统药物研究耗时长、成本高、失败率高。科学家测试了数百万种化合物,但只有一小部分能够进行临床前或临床测试。至关重要的是要接受创新,尤其是自动化技术,以减少药物研究的复杂性,避免将药物推向市场的高成本和漫长过程。一个快速发展的领域,人工智能的一个分支,称为机器学习(ML),正在被许多制药企业使用。通过将ML方法纳入药物开发过程,可以实现重复数据处理和分析过程的自动化。ML技术可以用于药物发现过程的许多阶段。在这项研究中,我们将讨论药物发现的步骤和可以应用于这些步骤的机器学习方法,并概述该领域的每一项研究工作。
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引用次数: 0
A Review on Herbal Drugs Used in the Treatment of Peptic Ulcer. 消化性溃疡的中药治疗进展。
Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1570163820666221212142221
Anup Jyoti Roy, Chinmoy Maut, Hemanta Kumar Gogoi, Syed Isfaqul Ahmed, Ankita Kashyap

Background: An ulcer is a condition characterized by inflammation, irritation, or erosion in the mucosal lining of the stomach or duodenum. Hence, peptic ulcer is the ulcer of both the stomach and the duodenum. 10% of the world's population is affected by chronic peptic ulcers. The formation of peptic ulcers depends on gastric juice pH and the decrease in mucosal defenses. Nonsteroidal antiinflammatory drugs (NSAIDs) and Helicobacter pylori (H. pylori) infection are the two significant factors disrupting mucosal resistance to injury. Indian herbal plants are exceptional for their ethnic, ethnobotanical, and ethno-pharmaceutical use. In this review, attempts have been made to gain information regarding some plants that may be used to treat or prevent peptic ulcers. The ultimate goal of peptic ulcer disease treatment is to reduce pain, cure ulcers, and prevent recurrence.

Objective: The aim of the study was to gain knowledge about several common medicinal plants employed in Ayurveda or contemporary science for the treatment or prevention of peptic ulcers and some natural and simple approaches to cure ulcers using readily available herbs.

Methods: The literature search was carried out using search engines, like Google Scholar, Scopus, PubMed, Medline, Springer, etc. Results: The extensive literature search showed natural herbs to have potential anti-ulcer activity, including cabbage, bananas, liquorice, fenugreek, garlic, Terminalia chebula, Acacia arabica, Aegle marmelos, Aloe vera, Allium sativum, Plantago ispagula, Mimosa pudica, Annona squamosa, Azadirachta indica, and Galega purpurea.

Conclusion: This study concluded several medicinal plants to effectively prevent or cure peptic ulcers caused by a variety of factors, including H. pylori, aspirin, indomethacin, alcohol, and others.

背景:溃疡是一种以胃或十二指肠粘膜内层的炎症、刺激或侵蚀为特征的疾病。因此,消化性溃疡是胃和十二指肠的溃疡。世界上10%的人口受到慢性消化性溃疡的影响。消化性溃疡的形成取决于胃液pH值和粘膜防御的降低。非甾体类抗炎药(NSAIDs)和幽门螺杆菌(h.p ylori)感染是破坏粘膜损伤抵抗的两个重要因素。印度的草本植物因其民族、民族植物学和民族药物用途而与众不同。在这篇综述中,试图获得一些可能用于治疗或预防消化性溃疡的植物的信息。消化性溃疡疾病治疗的最终目的是减轻疼痛,治愈溃疡,防止复发。目的:本研究的目的是了解阿育吠陀或当代科学中用于治疗或预防消化性溃疡的几种常见药用植物,以及使用现成的草药治疗溃疡的一些自然和简单的方法。方法:采用Google Scholar、Scopus、PubMed、Medline、Springer等搜索引擎进行文献检索。结果:广泛的文献检索显示,具有潜在抗溃疡活性的天然草药包括卷心菜、香蕉、甘草、胡芦巴、大蒜、车尾草、阿拉伯相思、蜜瓜、芦荟、葱、车前草、含水草、凤仙花、印楝和紫荆。结论:本研究总结了几种可有效预防或治疗多种因素引起的消化性溃疡的药用植物,包括幽门螺杆菌、阿司匹林、吲哚美辛、酒精等。
{"title":"A Review on Herbal Drugs Used in the Treatment of Peptic Ulcer.","authors":"Anup Jyoti Roy,&nbsp;Chinmoy Maut,&nbsp;Hemanta Kumar Gogoi,&nbsp;Syed Isfaqul Ahmed,&nbsp;Ankita Kashyap","doi":"10.2174/1570163820666221212142221","DOIUrl":"https://doi.org/10.2174/1570163820666221212142221","url":null,"abstract":"<p><strong>Background: </strong>An ulcer is a condition characterized by inflammation, irritation, or erosion in the mucosal lining of the stomach or duodenum. Hence, peptic ulcer is the ulcer of both the stomach and the duodenum. 10% of the world's population is affected by chronic peptic ulcers. The formation of peptic ulcers depends on gastric juice pH and the decrease in mucosal defenses. Nonsteroidal antiinflammatory drugs (NSAIDs) and Helicobacter pylori (H. pylori) infection are the two significant factors disrupting mucosal resistance to injury. Indian herbal plants are exceptional for their ethnic, ethnobotanical, and ethno-pharmaceutical use. In this review, attempts have been made to gain information regarding some plants that may be used to treat or prevent peptic ulcers. The ultimate goal of peptic ulcer disease treatment is to reduce pain, cure ulcers, and prevent recurrence.</p><p><strong>Objective: </strong>The aim of the study was to gain knowledge about several common medicinal plants employed in Ayurveda or contemporary science for the treatment or prevention of peptic ulcers and some natural and simple approaches to cure ulcers using readily available herbs.</p><p><strong>Methods: </strong>The literature search was carried out using search engines, like Google Scholar, Scopus, PubMed, Medline, Springer, etc. Results: The extensive literature search showed natural herbs to have potential anti-ulcer activity, including cabbage, bananas, liquorice, fenugreek, garlic, Terminalia chebula, Acacia arabica, Aegle marmelos, Aloe vera, Allium sativum, Plantago ispagula, Mimosa pudica, Annona squamosa, Azadirachta indica, and Galega purpurea.</p><p><strong>Conclusion: </strong>This study concluded several medicinal plants to effectively prevent or cure peptic ulcers caused by a variety of factors, including H. pylori, aspirin, indomethacin, alcohol, and others.</p>","PeriodicalId":10858,"journal":{"name":"Current drug discovery technologies","volume":"20 3","pages":"e121222211869"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9778461","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Treatment of Parkinson's Disease: Current Treatments and Recent Therapeutic Developments. 帕金森病的治疗:目前的治疗方法和最近的治疗进展。
Q3 Pharmacology, Toxicology and Pharmaceutics Pub Date : 2023-01-01 DOI: 10.2174/1570163820666230512100340
Ankita Wal, Pranay Wal, Himangi Vig, Nem Kumar Jain, Shruti Rathore, Karthickeyan Krishnan, Ashish Srivastava

Background: Parkinson's disease (PD) is a neurodegenerative syndrome defined by a variety of motor, cognitive, and psychomotor dysfunctions. The current pharmaceutical treatment focuses on treating the condition's symptoms. They are primarily concerned with reducing illness symptoms or avoiding dopamine metabolism. As our understanding of disease pathogenesis improves, new therapeutic approaches emerge.

Objective: This article aims to describe the standard Parkinson's medications based on symptoms and requirements. It emphasizes recent advancements in symptomatic therapy for motor indications and achievements in the research and clinical testing of medicines that promise to enable disease modification in patients with already-manifest PD.

Methods: Information for this paper was found by looking through Google Scholar and reading several research and review articles from Bentham Science, Science Direct, Elsevier, Frontiers, Taylor & Francis, and other publishers.

Result: Parkinson's disease therapeutic interventions are now limited to symptomatic therapy, mostly in dopaminergic medications and deep brain stimulation (DBS). They have the potential to deliver great therapeutic progress, yet they can also have serious drawbacks that decrease a patient's quality of life. The progress of pluripotent stem cell therapies and genome engineering procedures has sparked renewed hope for the treatment of a wide range of human illnesses, particularly genetic abnormalities.

Conclusion: The current Parkinson's therapy trends are successful and continually evolving, with several drugs currently undergoing clinical trials. As these new therapies constantly coming out and can be used together, they will likely change how Parkinson's disease is treated in the coming years.

背景:帕金森病(PD)是一种由多种运动、认知和精神运动功能障碍所定义的神经退行性综合征。目前的药物治疗侧重于治疗症状。它们主要关注减轻疾病症状或避免多巴胺代谢。随着我们对疾病发病机制认识的提高,新的治疗方法不断涌现。目的:本文旨在描述基于症状和需求的标准帕金森药物治疗。它强调了运动适应症对症治疗的最新进展,以及在药物研究和临床试验方面取得的成就,这些药物有望使已经表现出PD的患者能够改变疾病。方法:本文的信息是通过谷歌学术搜索和阅读几篇来自Bentham Science、Science Direct、Elsevier、Frontiers、Taylor & Francis等出版商的研究和评论文章找到的。结果:帕金森病的治疗干预措施目前仅限于对症治疗,主要是多巴胺能药物和深部脑刺激(DBS)。它们有可能带来巨大的治疗进展,但它们也可能有严重的缺点,降低患者的生活质量。多能干细胞疗法和基因组工程程序的进展为治疗广泛的人类疾病,特别是基因异常,点燃了新的希望。结论:目前帕金森病的治疗趋势是成功的,并且不断发展,目前有几种药物正在进行临床试验。随着这些新疗法的不断出现,并且可以一起使用,它们可能会在未来几年改变帕金森病的治疗方式。
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Current drug discovery technologies
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