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Urinary tract infections in immunocompromised patients. 免疫功能低下患者的尿路感染。
IF 3.6 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-08-01 Epub Date: 2025-06-09 DOI: 10.1097/QCO.0000000000001121
Cesar J Figueroa-Ortiz, Peter A Mead

Purpose of review: Urinary tract infections (UTIs) are a major source of morbidity in immunocompromised patients, including transplant recipients, individuals with hematologic malignancies, people living with HIV, and those receiving immunosuppressive therapies. This review provides a synthesis of recent evidence, highlighting challenges in diagnosis, management, and antimicrobial resistance in these high-risk populations.

Recent findings: Recent literature highlights the high burden of UTIs among immunocompromised patients. These infections are often caused by multidrug-resistant pathogens. Across these groups, common risk factors include immunosuppression, diabetes, urologic instrumentation, and catheterization. Diagnostic uncertainty - particularly distinguishing true infection from asymptomatic bacteriuria - frequently leads to overtreatment. Emerging stewardship tools, such as reflex urinalysis protocols and electronic phenotyping of antimicrobials (e.g. the use of the 'Acute Urinary Antibiotics' labelling), show promise for reducing inappropriate antibiotic use in outpatient settings.

Summary: UTIs in immunocompromised patients are increasingly complex due to atypical presentations and resistant pathogens. Clinical care must prioritize accurate diagnosis, judicious use of antibiotics, and implementation of stewardship interventions. Further research is needed to validate risk-based diagnostic tools and expand outpatient stewardship infrastructure in transplant and oncology settings.

综述目的:尿路感染(uti)是免疫功能低下患者发病的主要来源,包括移植受者、血液系统恶性肿瘤患者、HIV感染者和接受免疫抑制治疗的患者。本综述综合了最近的证据,强调了这些高危人群在诊断、管理和抗微生物药物耐药性方面面临的挑战。最近的发现:最近的文献强调了免疫功能低下患者中尿路感染的高负担。这些感染通常是由耐多药病原体引起的。在这些人群中,常见的危险因素包括免疫抑制、糖尿病、泌尿系统器械和导尿。诊断的不确定性-特别是区分真正的感染和无症状的细菌尿-经常导致过度治疗。新兴的管理工具,如反射性尿液分析方案和抗微生物药物的电子表型(例如使用“急性尿用抗生素”标签),显示出减少门诊环境中不适当抗生素使用的希望。摘要:由于不典型的表现和耐药病原体,免疫功能低下患者的尿路感染越来越复杂。临床护理必须优先考虑准确诊断、明智使用抗生素和实施管理干预措施。需要进一步的研究来验证基于风险的诊断工具,并扩大移植和肿瘤设置的门诊管理基础设施。
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引用次数: 0
Latent tuberculosis screening and treatment in solid organ and hematopoietic stem cell transplant candidates and recipients. 实体器官和造血干细胞移植候选者和受者的潜伏性结核筛查和治疗。
IF 3.6 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-08-01 Epub Date: 2025-06-04 DOI: 10.1097/QCO.0000000000001117
Sonya Krishnan, Robin Avery, Veronica Dioverti, Jeffrey A Tornheim

Purpose of review: Tuberculosis disease (TBD) has high mortality in transplant recipients. This review evaluates the current evidence for latent tuberculosis infection (LTBI) screening and treatment in solid organ transplant (SOT) and hematopoietic stem cell transplant recipients (HCST).

Recent findings: Untreated LTBI still poses a significant risk in transplant recipients, with reactivation to TBD leading to high mortality rates. Currently available methods to test for LTBI (interferon-gamma release assays and tuberculin skin tests) can have low predictive value for determining who will progress from LTBI to TBD in transplant. Tuberculosis preventive therapy (TPT) is recommended for those with a positive LTBI screening test. Evidence indicates that short-course, rifamycin-based TPT regimens are associated with less hepatoxicity and improved treatment completion compared to isoniazid. In the transplant population, however, drug-drug interactions limit their use, so isoniazid preventive therapy remains the preferred regimen. Several recent studies have evaluated moxifloxacin as a potential TPT regimen in transplant, but this regimen has not yet been incorporated into guidelines. The timing of LTBI treatment can differ for SOT versus HSCT.

Summary: While comprehensive LTBI screening and TPT are critical for reducing the risk of TBD, future research should aim to optimize LTBI diagnostic tools and therapeutic regimens to enhance the efficacy of LTBI diagnostics and minimize TPT side effects and drug-drug interactions in the transplant population.

综述目的:结核病(TBD)在移植受者中死亡率高。本综述评估了目前在实体器官移植(SOT)和造血干细胞移植(HCST)受者中潜伏性结核感染(LTBI)筛查和治疗的证据。最近的研究发现:未经治疗的LTBI在移植受者中仍然存在显著的风险,TBD的再激活导致高死亡率。目前可用的LTBI检测方法(干扰素- γ释放试验和结核菌素皮肤试验)对于确定移植后谁将从LTBI进展为TBD的预测价值较低。结核病预防治疗(TPT)是推荐那些与积极的LTBI筛选试验。有证据表明,与异烟肼相比,短期以利福霉素为基础的TPT方案具有更低的肝毒性和更好的治疗完成度。然而,在移植人群中,药物相互作用限制了它们的使用,因此异烟肼预防治疗仍然是首选方案。最近的几项研究已经评估了莫西沙星作为移植中潜在的TPT方案,但该方案尚未纳入指南。对于SOT和HSCT, LTBI治疗的时机可能不同。摘要:虽然全面的LTBI筛查和TPT对于降低TBD的风险至关重要,但未来的研究应旨在优化LTBI诊断工具和治疗方案,以提高LTBI诊断的有效性,并最大限度地减少移植人群中TPT的副作用和药物-药物相互作用。
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引用次数: 0
Chronic meningitis: diagnostic and therapeutic challenges. 慢性脑膜炎:诊断和治疗的挑战。
IF 3.6 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-06-01 Epub Date: 2025-04-04 DOI: 10.1097/QCO.0000000000001107
Matthew Smyth, Monica Diaz, Deanna Saylor

Purpose of review: We review recent advances in diagnosis and treatment of chronic meningitis, focusing on tuberculous meningitis (TBM), cryptococcal meningitis (CM), syphilitic meningitis, neuroborreliosis, and recurrent chronic meningitis. Noninfectious causes and unique challenges faced in resource-limited settings are also considered.

Recent findings: Novel biomarkers are being identified that may be useful for the diagnosis of TBM [i.e. monokine induced by interferon-γ (MIG), plasminogen binding proteins] and syphilitic meningitis (i.e. CXCL13, neurofilament light protein, etc.) but require more validation. Much progress has been made regarding diagnosis and treatment of CM, with a new semiquantitative lateral flow assay showing high diagnostic and prognostic utility and clinical trials demonstrating that regimens of oral lipid nanocrystal formulation and a single dose of liposomal formulation of amphotericin B maintain clinical efficacy with improved side effect profiles. An ongoing clinical trial of ceftriaxone for treatment of syphilitic meningitis and early stage studies of linezolid for TBM treatment may also lead to changes in recommended treatment regimens for these conditions in the near future.

Summary: Diagnosis and management of chronic meningitis remains a significant challenge, and further research is needed to improve our diagnostic and therapeutic armamentariums. However, emergence of potential new biomarkers for diagnosis and disease course is cause for optimism.

综述目的:我们回顾了慢性脑膜炎诊断和治疗的最新进展,重点关注结核性脑膜炎(TBM)、隐球菌性脑膜炎(CM)、梅毒性脑膜炎、神经源性脑膜炎和复发性慢性脑膜炎。此外,还考虑了非感染性病因以及在资源有限的环境中所面临的独特挑战:新发现的生物标记物可能有助于诊断TBM(即干扰素-γ诱导的单克因(MIG)、纤溶酶原结合蛋白)和梅毒性脑膜炎(即CXCL13、神经丝蛋白等),但需要更多的验证。CM 的诊断和治疗已取得了很大进展,一种新的半定量侧流测定显示出很高的诊断和预后效用,临床试验表明,口服脂质纳米晶体制剂和单剂量两性霉素 B 脂质体制剂的治疗方案可保持临床疗效,且副作用有所改善。目前正在进行的头孢曲松治疗梅毒性脑膜炎的临床试验和利奈唑胺治疗TBM的早期研究也可能在不久的将来改变这些疾病的推荐治疗方案。不过,用于诊断和病程的潜在新生物标志物的出现令人乐观。
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引用次数: 0
Lenacapavir: a first-in-class capsid inhibitor for HIV treatment and prevention. Lenacapavir:用于HIV治疗和预防的一流衣壳抑制剂。
IF 3.6 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-06-01 Epub Date: 2025-04-23 DOI: 10.1097/QCO.0000000000001113
Mehri S McKellar

Purpose of review: This review summarizes available data for lenacapavir (LEN), a first-in-class agent that targets several functions of the HIV capsid in the viral cycle, including nuclear entry, viral assembly, and capsid formation.

Recent findings: LEN has been approved in the United States as both oral tablets and injectable solution for treatment in heavily treatment-experienced adults with multidrug-resistant HIV-1. The subcutaneous injections are administered every 26 weeks (6 months). In 2024, LEN was named the biggest science breakthrough for HIV prevention, and is currently under review at the FDA.

Summary: LEN is a novel agent that can be administered subcutaneously every 6 months. Approved for treatment-experienced adults with multidrug-resistant HIV, lenacapavir may have additional uses including for HIV prevention.

综述目的:本综述总结了lenacapavir (LEN)的现有数据,lenacapavir是一种一流的药物,靶向HIV衣壳在病毒周期中的几种功能,包括核进入、病毒组装和衣壳形成。最近的发现:LEN已在美国被批准作为口服片剂和注射溶液,用于治疗有大量治疗经验的成人多药耐药HIV-1。皮下注射每26周(6个月)进行一次。2024年,LEN被评为艾滋病预防领域最大的科学突破,目前正在接受FDA的审查。总结:LEN是一种可以每6个月皮下给药的新型药物。lenacapavir被批准用于治疗有多药耐药经验的成人艾滋病毒,可能还有其他用途,包括艾滋病毒预防。
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引用次数: 0
Mpox: emergence following smallpox eradication, ongoing outbreaks and strategies for prevention. 麻疹:消灭天花后出现的情况、正在发生的疫情和预防战略。
IF 3.6 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-06-01 Epub Date: 2025-01-29 DOI: 10.1097/QCO.0000000000001100
Amy E Bryant, Stanford T Shulman

Purpose of review: This review focuses on the temporal relationship between the discontinuation of the global smallpox eradication effort with the rise of mpox in Africa and worldwide. It also discusses the global 2022 clade II mpox epidemic and the current 2024 clade I mpox outbreak. Newer findings on viral evolution and pathogenesis, plus current and future strategies for disease prevention, are reviewed.

Recent findings: The temporal association between the incidence of mpox and the World Health Organization's Global Smallpox Eradication Program (GSEP) is presented. The 2022 global mpox epidemic is discussed. Recent data show that clade IIb monkeypox virus (MPXV)-2022 has novel genetic features supporting a greater propensity for mutations that may be responsible for enhanced human-to-human transmissibility, increased disease severity and accelerated viral evolution. In 2023, another outbreak of mpox began in Africa, this time due to the potentially more virulent MPXV clade Ib strains. This outbreak remains ongoing in Africa, and clade Ib mpox cases have recently been reported elsewhere including the United States and Great Britain. The World Health Organization has deemed mpox to be a global public health emergency. Two smallpox vaccines are approved for mpox prevention in the United States; a third smallpox vaccine and an improved diagnostic test have recently received WHO Emergency Use authorization. Newer mRNA-based vaccines for evolving orthopoxvirus infections are discussed.

Summary: Vaccination to prevent smallpox provides immunologic cross-protection against infection with other members of genus Orthopoxvirus , including mpox. Discontinuation of the global smallpox eradication program in the 1980s and the subsequent waning of herd immunity contributed to the 2022 multinational epidemic of human clade IIb mpox infections. A second multinational outbreak with clade Ib MPXV is ongoing. Vaccination against smallpox remains the gold standard for mpox prevention, however newer multiepitope mRNA-based vaccines are in development and hold promise for prevention of mpox and other orthopoxvirus outbreaks.

综述目的:本综述的重点是全球根除天花努力的停止与非洲和世界范围内mpox的上升之间的时间关系。它还讨论了2022年全球II型m痘流行和目前2024年I型m痘爆发。本文综述了病毒进化和发病机制的最新发现,以及当前和未来的疾病预防策略。最近的发现:mpox的发病率与世界卫生组织的全球天花根除计划(GSEP)之间的时间关联被提出。讨论2022年全球痘流行。最近的数据显示,IIb进化支猴痘病毒(MPXV)-2022具有新的遗传特征,支持更大的突变倾向,这可能导致人与人之间的传播增强、疾病严重程度增加和病毒进化加速。2023年,非洲又爆发了一次麻疹疫情,这次是由于潜在毒性更强的MPXV分支Ib株。这一疫情在非洲仍在继续,最近在包括美国和英国在内的其他地方报告了b支痘病例。世界卫生组织已将麻疹视为全球突发公共卫生事件。两种天花疫苗在美国被批准用于预防m痘;第三种天花疫苗和改进的诊断测试最近获得世卫组织紧急使用授权。讨论了用于进化的正痘病毒感染的新型mrna疫苗。摘要:预防天花的疫苗接种提供了免疫交叉保护,防止与包括m痘在内的其他正痘病毒属成员的感染。20世纪80年代全球天花根除计划的终止以及随后群体免疫力的下降导致了2022年人类进化枝ⅱb型天花感染的多国流行。正在发生第二次MPXV分支b型多国暴发。针对天花的疫苗接种仍然是预防m痘的黄金标准,然而,新的基于多表位mrna的疫苗正在开发中,有望预防m痘和其他正痘病毒暴发。
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引用次数: 0
Aseptic meningitis: a foundation review. 无菌性脑膜炎:基础回顾。
IF 3.6 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-06-01 Epub Date: 2025-03-28 DOI: 10.1097/QCO.0000000000001105
Hazim Allos, Rodrigo Hasbun

Purpose of review: This review addresses the multifaceted nature of aseptic meningitis, a condition with diverse infectious and noninfectious etiologies. Despite its common presentation in clinical settings, over half of the cases remain without an identified cause, necessitating a comprehensive examination of diagnostic and management strategies. The increasing availability of advanced molecular diagnostics and the challenge of distinguishing bacterial from nonbacterial cases make this an opportune time to explore its implications for clinical practice.

Recent findings: The literature highlights the pivotal role of advanced molecular diagnostics, such as multiplex PCR and metagenomic sequencing, in improving the identification of pathogens in aseptic meningitis. Enteroviruses remain the leading cause, but pathogens like Herpesviridae, arboviruses, and nonviral agents such as fungi and spirochetes also contribute significantly. New diagnostic algorithms and clinical models are emerging to distinguish bacterial from viral meningitis, reducing unnecessary treatments.

Summary: Aseptic meningitis management is evolving with advancements in diagnostic technologies that allow for earlier pathogen identification, improving patient outcomes and minimizing healthcare costs. These findings underscore the importance of timely and accurate diagnostics and tailored therapeutic strategies in both clinical and research settings. Enhanced awareness of noninfectious causes is also crucial for comprehensive care.

综述目的:本综述探讨了无菌性脑膜炎的多面性,这是一种具有多种感染性和非感染性病因的疾病。尽管它在临床环境中很常见,但超过一半的病例仍然没有确定病因,因此需要对诊断和管理策略进行全面检查。随着先进分子诊断技术的日益普及,以及区分细菌和非细菌病例的挑战,这是一个探索其临床实践意义的好时机。最新发现:文献强调了先进的分子诊断,如多重PCR和宏基因组测序,在提高无菌性脑膜炎病原体鉴定中的关键作用。肠病毒仍然是主要病因,但疱疹病毒科、虫媒病毒等病原体以及真菌和螺旋体等非病毒性病原体也起着重要作用。新的诊断算法和临床模型正在出现,以区分细菌性脑膜炎和病毒性脑膜炎,减少不必要的治疗。摘要:随着诊断技术的进步,无菌性脑膜炎的管理也在不断发展,这些技术允许更早地识别病原体,改善患者的预后并最大限度地降低医疗成本。这些发现强调了在临床和研究环境中及时准确诊断和量身定制治疗策略的重要性。提高对非传染性原因的认识对于全面护理也至关重要。
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引用次数: 0
Corticosteroids for viral central nervous system infections. 皮质类固醇治疗病毒性中枢神经系统感染。
IF 3.6 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-06-01 Epub Date: 2025-04-01 DOI: 10.1097/QCO.0000000000001106
Jacob Bodilsen, Lærke Storgaard Duerlund, Henrik Nielsen

Purpose of review: Viruses are frequent causes of central nervous system (CNS) infection. Lacking specific antiviral treatment or inadequate clinical response may lead to treatment with corticosteroids. This review describes the rationale for and clinical experience with the use of adjunctive corticosteroids for viral CNS infections.

Recent findings: Corticosteroids display anti-inflammatory, immunosuppressive, antiproliferative, and vasoconstrictive effects by genomic and nongenomic regulation of human cells. Recent population-based studies consistently show that empiric dexamethasone during diagnostic work-up for meningitis has neither been associated with improved outcome nor adverse effects in viral meningitis. Myelitis is most often due to noninfectious causes and standard empiric treatment includes high-dose methylprednisolone. There are no convincing data on viral myelitis to support a change of this approach. Corticosteroids have occasionally been employed in different types of viral encephalitis. Observational data and a few randomized clinical trials have not documented any substantial beneficial effects of adjunctive corticosteroids in viral encephalitis. Risks of harm with current treatment regimens remained low in published studies.

Summary: Except for myelitis, there are no data to support routine use of corticosteroids for viral CNS infections. Large, multidisciplinary syndromic platform trials of all-cause encephalitis may be a viable way to inform treatment guidelines.

综述目的:病毒是引起中枢神经系统(CNS)感染的常见原因。缺乏特异性抗病毒治疗或临床反应不足可能导致使用皮质类固醇治疗。这篇综述描述了使用辅助皮质类固醇治疗病毒性中枢神经系统感染的基本原理和临床经验。最近发现:皮质类固醇通过对人类细胞的基因组和非基因组调控显示出抗炎、免疫抑制、抗增殖和血管收缩作用。最近基于人群的研究一致表明,在脑膜炎诊断检查期间使用地塞米松既没有改善病毒性脑膜炎的预后,也没有不良反应。脊髓炎通常是由于非感染性原因和标准经验治疗包括大剂量甲基强的松龙。没有令人信服的关于病毒性脊髓炎的数据来支持这种方法的改变。皮质类固醇偶尔用于不同类型的病毒性脑炎。观察性数据和一些随机临床试验没有证明辅助皮质类固醇对病毒性脑炎有任何实质性的有益作用。在已发表的研究中,目前的治疗方案的危害风险仍然很低。总结:除脊髓炎外,没有数据支持常规使用皮质类固醇治疗病毒性中枢神经系统感染。大型、多学科的全因脑炎综合征平台试验可能是为治疗指南提供信息的可行方法。
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引用次数: 0
The power of story: what Victorian novels can teach us about public health. 故事的力量:维多利亚时代的小说教给我们的关于公共卫生的知识。
IF 3.6 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-06-01 Epub Date: 2025-03-27 DOI: 10.1097/QCO.0000000000001103
Andrea Kaston Tange

Purpose of review: The recent uptick in outbreaks of infectious diseases once firmly under control in North America and the UK (including measles, tuberculosis, scarlet fever, and whooping cough) concerns public health professionals in light of increasing vaccine skepticism. Because disease prevention and cure have evolved slowly, the general public may misunderstand the potential impact of rejecting vaccines and need stories that will clarify the risks.

Recent findings: Studying history and literature reveals that modern citizens of wealthy, industrialized nations have forgotten the emotional cost of widespread child mortality. Examples from nineteenth-century novels offer vivid reminders of the agonies created by communicable diseases in an age before vaccines and antibiotics. Better understanding both the causes of child mortality - which hovered near 50% in North America and the UK in the 1840s - and the shared cultural grief such losses produced is a powerful reminder of why no one would want to return to that public health moment.

Summary: Medical health professionals might usefully complement their scientific understanding with history, in order to be better equipped to reach those who are vaccine hesitant.

目的:在北美和英国,曾经得到严格控制的传染病(包括麻疹、结核病、猩红热和百日咳)最近爆发的上升,引起了公共卫生专业人员的关注,因为人们对疫苗的怀疑日益增加。由于疾病预防和治疗进展缓慢,公众可能会误解拒绝接种疫苗的潜在影响,并需要澄清风险的故事。最近的发现:对历史和文学的研究表明,富裕工业化国家的现代公民已经忘记了普遍的儿童死亡率所带来的情感代价。19世纪小说中的例子生动地提醒人们,在疫苗和抗生素出现之前,传染病给人们带来了痛苦。更好地了解儿童死亡率的原因——19世纪40年代,北美和英国的儿童死亡率徘徊在50%左右——以及这种损失所带来的共同文化悲痛,有力地提醒人们,为什么没有人愿意回到那个公共卫生时刻。总结:医疗卫生专业人员可以用历史来补充他们的科学知识,以便更好地向那些对疫苗犹豫不决的人提供帮助。
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引用次数: 0
Complexities of cardiomyopathy in septic shock. 感染性休克心肌病的复杂性。
IF 3.6 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-06-01 Epub Date: 2025-03-24 DOI: 10.1097/QCO.0000000000001102
Dennis L Stevens, Amy E Bryant

Purpose of review: This review highlights the complex pathophysiology of myocardial dysfunction in septic shock and emphasizes the need for early and repeated hemodynamic assessments to improve outcome.

Recent findings: Septic cardiomyopathy is a complex, dynamic process driven by multiple mechanisms such as direct myocardial depression induced by host immune mediators (e.g., cytokines, nitric oxide) and/or bacterial toxins, and mitochondrial metabolic dysfunction. Recent echocardiography studies have described multiple unique hemodynamic clusters (phenotypes) that correlated with clinical outcomes. Similarly, serial echocardiography findings and mean arterial pressure abnormalities in patients with Streptococcal Toxic Shock Syndrome (StrepTSS) yielded three distinct hemodynamic groups that predicted mortality and morbidity. Because excessive use of fluids and/or vasopressors can be detrimental, especially in patients with microvascular injury or cardiomyopathy, application of the cardiovascular performance criteria of these different phenotypes could better inform management decisions in real time and improve outcome.

Summary: Septic cardiomyopathy is a dynamic, multidimensional response of the myocardium to infection involving both normal and dysregulated immune responses in which the measurable changes in myocardial function predict outcomes. This current paradigm mandates that functional parameters of cardiac performance be measured early and repeatedly throughout the disease course using echocardiography to guide treatment and improve outcome.

综述目的:本综述强调感染性休克中心肌功能障碍的复杂病理生理,并强调早期和反复进行血流动力学评估以改善预后的必要性。最近发现:脓毒性心肌病是一个复杂的、动态的过程,由多种机制驱动,如宿主免疫介质(如细胞因子、一氧化氮)和/或细菌毒素诱导的直接心肌抑制,以及线粒体代谢功能障碍。最近的超声心动图研究描述了与临床结果相关的多种独特的血流动力学簇(表型)。同样,链球菌中毒性休克综合征(StrepTSS)患者的一系列超声心动图结果和平均动脉压异常产生了三个不同的血流动力学组,可以预测死亡率和发病率。由于过度使用液体和/或血管加压剂可能是有害的,特别是在微血管损伤或心肌病患者中,应用这些不同表型的心血管表现标准可以更好地实时告知管理决策并改善结果。摘要:感染性心肌病是心肌对感染的动态、多维反应,包括正常和失调的免疫反应,心肌功能的可测量变化可预测预后。目前的模式要求在疾病过程中使用超声心动图早期和反复测量心脏功能参数,以指导治疗和改善结果。
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引用次数: 0
A role for genomics-based studies of Bordetella pertussis adaptation. 百日咳博德泰拉适应基因组学研究的作用。
IF 3.6 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-06-01 Epub Date: 2025-04-21 DOI: 10.1097/QCO.0000000000001109
Sarah K Cameron, Andrew Preston

Purpose of review: Cases of whooping cough (pertussis) have rebounded strongly from the very low incidence observed during the pandemic. This re-emergence is characterized by changes in epidemiology. Here we describe the importance of genomics to monitor and understand the drivers to these changes.

Recent findings: Changes in the genotype of strains isolated during recent outbreaks suggests that the pandemic disturbed the global Bordetella pertussis population structure. The emergence of dominant and antibiotic-resistant clones in China is of concern even though the source of antibiotic selection pressure on B. pertussis is unclear. A recent study illustrates how to use genomic data to go beyond just surveillance, inferring the relative fitness of genotypes and the identification of specific mutations distinguishing such lineages. Such approaches are required to understand the forces driving adaptation.

Summary: Pertussis is resurgent in many countries, involving changes in epidemiology and strong suggestions of strain adaptation. The continued use of vaccination, and design of new interventions, to control pertussis requires an understanding of these changes. Genomic analyses will be key to this, involving integration of more complete host and pathogen parameters than have been used to date.

综述目的:百日咳(百日咳)病例已从大流行期间观察到的极低发病率强劲反弹。这种重新出现的特点是流行病学的变化。在这里,我们描述了基因组学对监测和理解这些变化的驱动因素的重要性。最近的发现:在最近爆发期间分离的菌株基因型的变化表明,大流行扰乱了全球百日咳博德泰拉种群结构。尽管百日咳的抗生素选择压力来源尚不清楚,但在中国出现的优势和耐药克隆仍令人担忧。最近的一项研究说明了如何使用基因组数据来超越仅仅监视,推断基因型的相对适合度和识别区分这些谱系的特定突变。我们需要这样的方法来理解推动适应的力量。总结:百日咳在许多国家死灰复燃,涉及流行病学的变化和毒株适应的强烈建议。继续使用疫苗接种和设计新的干预措施来控制百日咳需要了解这些变化。基因组分析将是这方面的关键,涉及到比迄今为止使用的更完整的宿主和病原体参数的整合。
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引用次数: 0
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