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ARNA: Interactive Comparison and Alignment of RNA Secondary Structure ARNA: RNA二级结构的相互比较和比对
Pub Date : 2004-10-10 DOI: 10.1109/INFVIS.2004.7
Gerald Gainant, David Auber
ARNA is an interactive visualization system that supports comparison and alignment of RNA secondary structure. We present a new approach to RNA alignment that exploits the complex structure of the Smith-Waterman local distance matrix, allowing people to explore the space of possible partial alignments to discover a good global solution. The modular software architecture separates the user interface from computation, allowing the possibility of incorporating different alignment algorithms into the same framework.
ARNA是一个支持RNA二级结构比较和比对的交互式可视化系统。我们提出了一种新的RNA比对方法,利用Smith-Waterman局部距离矩阵的复杂结构,允许人们探索可能的部分比对空间,以发现一个好的全局解决方案。模块化的软件架构将用户界面从计算中分离出来,允许将不同的对齐算法合并到同一个框架中。
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引用次数: 8
Artifacts of the Presence Era: Using Information Visualization to Create an Evocative Souvenir 在场时代的文物:利用信息可视化创造一种令人回味的纪念品
Pub Date : 2004-10-10 DOI: 10.1109/INFVIS.2004.8
F. Viégas, Ethan Perry, E. Howe, J. Donath
We present Artifacts of the Presence Era, a digital installation that uses a geological metaphor to visualize the events in a physical space over time. The piece captures video and audio from a museum and constructs an impressionistic visualization of the evolving history in the space. Instead of creating a visualization tool for data analysis, we chose to produce a piece that functions as a souvenir of a particular time and place. We describe the design choices we made in creating this installation, the visualization techniques we developed, and the reactions we observed from users and the media. We suggest that the same approach can be applied to a more general set of visualization contexts, ranging from email archives to newsgroups conversations
我们展示了“在场时代的文物”,这是一个数字装置,它使用地质隐喻来可视化物理空间中随时间变化的事件。这件作品捕捉了博物馆的视频和音频,并在空间中构建了一种印象主义的可视化历史演变。我们没有制作一个用于数据分析的可视化工具,而是选择制作一个作为特定时间和地点纪念品的作品。我们描述了我们在创建这个装置时所做的设计选择,我们开发的可视化技术,以及我们从用户和媒体那里观察到的反应。我们建议同样的方法可以应用于更一般的可视化上下文集合,从电子邮件存档到新闻组对话
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引用次数: 47
VIM: A Framework for Intelligence Analysis VIM:情报分析的框架
Pub Date : 2004-10-10 DOI: 10.1109/INFVIS.2004.72
Alan Keahey, Kenneth C. Cox
Intelligence analysts receive thousands of facts from a variety of sources. In addition to the bare details of the fact — a particular person, for example — each fact may have provenance, reliability, weight, and other attributes. Each fact may also be associated with other facts, e.g. that one person met another at a particular location. The analyst’s task is to examine a huge collection of such loosely-structured facts, and try to "connect the dots" to perceive the underlying and unknown causes — and their possible future courses. We have designed and implemented a Java platform called VIM to support intelligence analysts in their work.
情报分析人员从不同的来源获得数以千计的事实。除了事实的简单细节——例如,一个特定的人——每个事实可能有出处、可靠性、重要性和其他属性。每个事实也可能与其他事实相关联,例如,一个人在一个特定的地点遇到了另一个人。分析师的任务是检查大量结构松散的事实,并试图将这些点“连接起来”,以感知潜在的和未知的原因,以及它们可能的未来走向。我们设计并实现了一个名为VIM的Java平台,以支持情报分析人员的工作。
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引用次数: 0
Distortion-Based Visualization for Long-Term Continuous Acoustic Monitoring 基于畸变的长期连续声监测可视化
Pub Date : 2004-10-10 DOI: 10.1109/INFVIS.2004.17
F. Tsutsumi, N. Itoh, T. Onoda
Visualizing long-term acoustic data has been an important subject in the field of equipment surveillance and equipment diagnosis. This paper proposes a distortion-based visualization method of long-term acoustic data. We applied the method to 1 hour observation data of electric discharge sound, and our method could visualize the sound data more intelligibly as compared with conventional methods.
长期声学数据可视化一直是设备监测和设备诊断领域的一个重要课题。提出了一种基于畸变的长期声学数据可视化方法。将该方法应用于放电声1 h的观测数据,与常规方法相比,该方法能更清晰地显示声音数据。
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引用次数: 0
Understanding Eight Years of InfoVis Conferences Using PaperLens 用纸透镜理解InfoVis会议的八年历程
Pub Date : 2004-10-10 DOI: 10.1109/INFVIS.2004.69
Bongshin Lee, M. Czerwinski, G. Robertson, B. Bederson
We present PaperLens, a visualization that reveals connections, trends, and activity throughout the InfoVis conference community for the last 8 years. It tightly couples views across papers, authors, and references. This paper describes how we analyzed the data, the strengths and weaknesses of PaperLens, and interesting patterns and relationships we have discovered using PaperLens.
我们展示PaperLens,一个展示过去8年来InfoVis会议社区的联系、趋势和活动的可视化工具。它紧密耦合了论文、作者和参考文献之间的视图。本文描述了我们如何分析数据,PaperLens的优势和劣势,以及我们使用PaperLens发现的有趣模式和关系。
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引用次数: 20
Clutter Reduction in Multi-Dimensional Data Visualization Using Dimension Reordering 多维数据可视化中使用维重排序的杂波减少
Pub Date : 2004-10-10 DOI: 10.1109/INFVIS.2004.15
Wei Peng, M. Ward, Elke A. Rundensteiner
Visual clutter denotes a disordered collection of graphical entities in information visualization. Clutter can obscure the structure present in the data. Even in a small dataset, clutter can make it hard for the viewer to find patterns, relationships and structure. In this paper, we define visual clutter as any aspect of the visualization that interferes with the viewer's understanding of the data, and present the concept of clutter-based dimension reordering. Dimension order is an attribute that can significantly affect a visualization's expressiveness. By varying the dimension order in a display, it is possible to reduce clutter without reducing information content or modifying the data in any way. Clutter reduction is a display-dependent task. In this paper, we follow a three-step procedure for four different visualization techniques. For each display technique, first, we determine what constitutes clutter in terms of display properties; then we design a metric to measure visual clutter in this display; finally we search for an order that minimizes the clutter in a display
视觉杂乱是指信息可视化中图形实体的无序集合。杂波会模糊数据中的结构。即使在一个小数据集中,杂乱也会使查看者很难找到模式、关系和结构。在本文中,我们将视觉杂乱定义为干扰观看者对数据理解的任何可视化方面,并提出了基于杂乱的维度重新排序的概念。维度顺序是一个可以显著影响可视化表现力的属性。通过改变显示中的维度顺序,可以在不减少信息内容或以任何方式修改数据的情况下减少混乱。减少杂乱是一项依赖于显示的任务。在本文中,我们遵循四种不同的可视化技术的三步程序。对于每种显示技术,首先,我们根据显示属性确定什么构成杂波;然后,我们设计了一个度量来度量该显示器中的视觉杂波;最后,我们寻找一种使显示中的杂乱最小化的顺序
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引用次数: 346
Visualizing High Dimensional Datasets Using Partiview 使用Partiview可视化高维数据集
Pub Date : 2004-10-10 DOI: 10.1109/INFVIS.2004.76
Dinoj Surendran, Stuart Levy
A standard method of visualizing high-dimensional data is reducing its dimensionality to two or three using some algorithm, and then creating a scatterplot with data represented by labelled and/or colored dots. Two problems with this approach are (1) dots do not represent data well, (2) reducing to just three dimensions does not make full use of several dimensionality-reduction algorithms. We demonstrate how Partiview can be used to solve these problems, in the context of handwriting recognition and image retrieval.
可视化高维数据的标准方法是使用某种算法将其维数减少到2或3,然后用标记和/或彩色点表示的数据创建散点图。这种方法的两个问题是:(1)点不能很好地表示数据;(2)仅降维不能充分利用几种降维算法。我们演示了如何在手写识别和图像检索的背景下使用Partiview来解决这些问题。
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引用次数: 7
Interactive Visualization of Small World Graphs 小世界图的交互式可视化
Pub Date : 2004-10-10 DOI: 10.1109/INFVIS.2004.43
F. V. Ham, J. V. Wijk
Many real world graphs have small world characteristics, that is, they have a small diameter compared to the number of nodes and exhibit a local cluster structure. Examples are social networks, software structures, bibliographic references and biological neural nets. Their high connectivity makes both finding a pleasing layout and a suitable clustering hard. In this paper we present a method to create scalable, interactive visualizations of small world graphs, allowing the user to inspect local clusters while maintaining a global overview of the entire structure. The visualization method uses a combination of both semantical and geometrical distortions, while the layout is generated by a spring embedder algorithm using recently developed force model. We use a cross referenced database of 500 artists as a running example
许多现实世界的图都具有小世界特征,即它们的直径相对于节点数量来说很小,并且表现出局部簇结构。例如社会网络、软件结构、参考书目和生物神经网络。它们的高连接性使得很难找到令人满意的布局和合适的集群。在本文中,我们提出了一种方法来创建可扩展的,交互式的小世界图的可视化,允许用户检查局部集群,同时保持整个结构的全局概述。可视化方法采用了语义和几何变形相结合的方法,而布局则是基于最近开发的力模型的弹簧嵌入算法生成的。我们使用500名艺术家的交叉参考数据库作为运行示例
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引用次数: 212
An Associative Information Visualizer 关联信息可视化器
Pub Date : 2004-10-10 DOI: 10.1109/INFVIS.2004.4
H. D. White, Xia Lin, J. Buzydlowski
The following item is made available as a courtesy to scholars by the author(s) and Drexel University Library and may contain materials and content, including computer code and tags, artwork, text, graphics, images, and illustrations (Material) which may be protected by copyright law. Unless otherwise noted, the Material is made available for non profit and educational purposes, such as research, teaching and private study. For these limited purposes, you may reproduce (print, download or make copies) the Material without prior permission. All copies must include any copyright notice originally included with the Material. You must seek permission from the authors or copyright owners for all uses that are not allowed by fair use and other provisions of the U.S. Copyright Law. The responsibility for making an independent legal assessment and securing any necessary permission rests with persons desiring to reproduce or use the Material.
以下项目由作者和德雷塞尔大学图书馆为学者提供,可能包含可能受版权法保护的材料和内容,包括计算机代码和标签、艺术品、文本、图形、图像和插图(材料)。除非另有说明,本材料可用于非营利性和教育目的,如研究、教学和私人学习。出于这些有限的目的,您可以在未经事先许可的情况下复制(打印、下载或复制)材料。所有副本必须包括原始包含在材料中的任何版权声明。对于合理使用和美国版权法的其他规定所不允许的所有使用,您必须寻求作者或版权所有者的许可。进行独立法律评估并获得任何必要许可的责任由希望复制或使用该材料的人承担。
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引用次数: 7
One-For-All: Visualization of the Information Visualization Symposia 一对一:信息可视化专题讨论会的可视化
Pub Date : 2004-10-10 DOI: 10.1109/INFVIS.2004.50
S. Teoh, K. Ma
We developed our own tool to visualize the history of the Infovis Symposiums. We call our tool “One-For-All”, because we want to generate one image to at once answer all four tasks of the contest effectively (though not necessarily optimally). Furthermore, we designed the tool to be intuitive, that is, we would like the user to immediately make sense of the visualization, even without a legend or a user guide. These are ambitious goals, but we believe that a good visualization should meet these criteria. Much preprocessing was needed before visualization. First, we have to coalesce the keywords, for example, we manually group “hierarchy” and “hierarchies” as the same keyword. Next, we find the most important keywords, with the most number of papers. We use these keywords as research areas within information visualization. We also notice that many of the 2002 papers do not have keywords, so we have to manually insert keywords according to their titles. We are not allowed to look up external information, that is, we cannot find their actual keywords from the publication. Next, we re-arrange the areas using MDS such that those areas with the most cross-references are placed near to one another. Since there is so much data, we find the important papers/authors, according to how much they are cited, and we emphasize them in our visualization. In the overview visualization of Figure 2, we show a lot of information, for example, (1) important keywords and all the papers under them, (2) related research areas (eg. graph is next to hierarchies), (3) citations, (4) important authors, (5) important papers, and (6) important external papers. A key design feature is that all these very different information can be visualized clearly in one single display. The way this is achieved is through color-coding, so that if any user is interested in any particular information, he/she just has to focus attention on that color. For example, if you focus on the cyan words, you see all the first authors, and everything else fades away (try it out yourself!). The important papers are represented by bigger circles according to how many citations they have within Infovis. Their titles are also labelled. The two most important papers also have their citations highlighted. In this way, the important papers are immediately visible. We can see that the top two papers are both in the earliest year (1995), and they are also in two very different topics, since they only have two common papers refer to them. The layout consists of vertical grey columns of research areas within Infovis. The areas that contain more papers are thicker and are labelled with darker text. We can clearly see that the most important area is “hierarchies” and this area contains many recent papers. “Graph drawing” particularly has many papers in 2001. “Information retrieval” has many papers early in 1995, but no papers in recent years. Adjactent to “Information retrieval” is “Information analysis”, which has
我们开发了自己的工具来可视化Infovis专题讨论会的历史。我们称我们的工具为“one - for - all”,因为我们想要生成一张图像来一次有效地回答比赛的所有四个任务(尽管不一定是最佳的)。此外,我们设计的工具是直观的,也就是说,我们希望用户立即理解可视化,即使没有图例或用户指南。这些都是雄心勃勃的目标,但我们认为,一个好的可视化应该满足这些标准。在可视化之前需要进行大量的预处理。首先,我们要合并关键字,例如,我们手动将“hierarchy”和“hierarchies”分组为同一个关键字。接下来,我们找到最重要的关键词,论文数量最多。我们使用这些关键词作为信息可视化的研究领域。我们还注意到,2002年的许多论文没有关键词,所以我们必须根据标题手动插入关键词。我们不允许查阅外部信息,也就是说,我们无法从出版物中找到他们的实际关键字。接下来,我们使用MDS重新排列区域,使交叉引用最多的区域彼此靠近。由于数据非常多,我们根据被引用的次数找到重要的论文/作者,并在我们的可视化中强调它们。在图2的概览可视化中,我们展示了大量的信息,例如(1)重要的关键词及其下的所有论文,(2)相关的研究领域(如;(3)引文,(4)重要作者,(5)重要论文,(6)重要外部论文。一个关键的设计特点是,所有这些非常不同的信息可以清晰地显示在一个显示器上。实现这一点的方法是通过颜色编码,所以如果任何用户对任何特定信息感兴趣,他/她只需要将注意力集中在颜色上。例如,如果你把注意力集中在青色的单词上,你会看到所有的第一作者,而其他的一切都消失了(你自己试试吧!)根据在infois中被引用的次数,重要的论文用更大的圆圈表示。他们的头衔也被贴上了标签。最重要的两篇论文的引用也有突出显示。这样一来,重要的文件就一目了然了。我们可以看到,前两篇论文都是在最早的年份(1995年),而且它们也属于两个非常不同的主题,因为它们只有两篇共同的论文参考它们。该布局由Infovis中研究领域的垂直灰色列组成。含有较多纸张的区域较厚,并以较深的文字标记。我们可以清楚地看到,最重要的领域是“等级制度”,这个领域包含了许多最近的论文。《图形绘制》在2001年有多篇论文。《信息检索》早在1995年就有不少论文,但近年来一直没有论文。与“信息检索”相邻的是“信息分析”,从1996年到1999年有很多论文。这很有趣,因为分析逻辑上紧跟检索,所以它是有意义的。
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引用次数: 3
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IEEE Symposium on Information Visualization
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