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Notes on the diatom collection of the Natural History Museum, London (BM) VIII: the types of Arachnoidiscus in Brown’s monograph (Brown 1933) 伦敦自然历史博物馆(BM)硅藻收藏笔记 VIII:布朗专著(布朗,1933 年)中的蛛网藻类型
IF 1.8 3区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2024-01-17 DOI: 10.1080/0269249x.2023.2274330
David M. Williams
Nicholas Edward Brown, a botanist primarily interested in the African flowering plant flora, was also an active member of the Quekett Microscopical Club. In 1933, he published a monograph on the ge...
尼古拉斯-爱德华-布朗(Nicholas Edward Brown)是一位主要研究非洲开花植物区系的植物学家,同时也是奎基特显微镜俱乐部的活跃成员。1933 年,他出版了一本关于非洲花卉植物的专著。
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引用次数: 0
Assessment of the ecological status of large lowland rivers (Sava and Tisa, Serbia) based on digital microscopic investigation of the diatom communities 根据硅藻群落的数码显微镜调查评估大型低地河流(塞尔维亚萨瓦河和蒂萨河)的生态状况
IF 1.8 3区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2024-01-17 DOI: 10.1080/0269249x.2023.2291214
Danijela Vidaković, Ntambwe Albert Serge Mayombo, Andrea Burfeid Castellanos, Michael Kloster, Bank Beszteri
Large lowland rivers represent an important type of ecosystem that has been under a constant anthropogenic influence (industry, thermal power plants, untreated communal water, and agriculture) for ...
大型低地河流是一种重要的生态系统,长期以来一直受到人类活动(工业、热电厂、未经处理的公共用水和农业)的影响。
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引用次数: 0
Moss-associated diatoms from Malaysian montane cloud forest with a description of two new species 马来西亚山地云雾林中的苔藓相关硅藻及两个新物种的描述
IF 1.8 3区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-12-12 DOI: 10.1080/0269249x.2023.2261447
Mateusz Rybak, Łukasz Peszek, Małgorzata Bąk, Nurul Shahida Redzuan
Although tropical montane cloud forests (TMCFs) occupy less than half of a percent of the Earth’s land surface, they are the most species-rich and species-dense ecosystems worldwide. Despite numero...
虽然热带山地云雾林(TMCFs)只占地球陆地面积的不到一半,但却是全世界物种最丰富、最密集的生态系统。尽管热带高山云雾林中的物种数量少之又少,但它们却是世界上物种最丰富、最密集的生态系统。
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引用次数: 0
Three new cymbelloid species in the genera Cymbella , Cymbopleura and Delicatophycus from the mineral spring Crvena Voda near Skopje, Republic of North Macedonia 北马其顿共和国斯科普里附近 Crvena Voda 矿泉中发现的三个蝶形花属新种:Cymbella、Cymbopleura 和 Delicatophycus
3区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-11-14 DOI: 10.1080/0269249x.2023.2271018
Zlatko Levkov, Dušica Zaova, Ingrid Jüttner
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引用次数: 0
Diatoms of the northeastern Gulf of Mexico: Vallithidium (Achnanthales: Achnanthidiaceae), a new monoraphid genus based on Navicula marginulata Cleve 墨西哥湾东北部的硅藻:水晶藻属(水晶藻门:水晶藻科),一种以水晶藻为基础的单蚜虫新属
3区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-11-14 DOI: 10.1080/0269249x.2023.2267049
James A. Nienow, Akshinthala K. S. K. Prasad
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引用次数: 0
The conspecificity of Aulacoseira konstantinovii and Praecyclostephanos boengchhmariensis with comments on the genus Praecyclostephanos 孔雀鱼与波氏原环stephanos boengchmariensis的同质性及对原环stephanos属的评析
3区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-11-07 DOI: 10.1080/0269249x.2023.2261667
Sergey I. Genkal, Anton M. Glushchenko, Maria A. Gololobova
AbstractThe centric diatom species Aulacoseira konstantinovii was described from Lake Tonlé Sap (Cambodia) but was erroneously assigned to the genus Aulacoseira. Subsequently, based on a unique set of morphological characters, the genus Praecyclostephanos with the single species P. boengchmariensis was established based on the material from this lake. Examination of published data has allowed us to compare the morphology of A. konstantinovii and P. boengchmariensis and confirm their conspecificity. A new combination, Praecyclostephanos konstantinovii comb. nov., is therefore proposed.Keywords: AulacoseiraPraecyclostephanoscentric diatomsmorphologysystematicstaxonomySoutheast Asia AcknowledgementsThe work of S.I. Genkal was carried out within the institutional research project ‘Diversity, Structure and Functioning of Algal and Plant Communities in Continental Waters’ (No. 121051100099-5) of the Papanin Institute for Biology of Inland Waters RAS. The work of A.M. Glushchenko was carried out within the state assignment of Ministry of Science and Higher Education of the Russian Federation (theme No. 122042700045-3). The work of M.A. Gololobova was carried out as part of the Scientific Project of the State Order of the Government of Russian Federation to Lomonosov Moscow State University (No. 121032300080-0). We are very grateful to two anonymous reviewers for constructive and helpful comments, to Loïc Tudesque for permission to use micrographs of Praecyclostephanos boengchmariensis, and Nicholas Turland for his explanations concerning nomenclature and the Code. We are also very grateful to Eileen J. Cox for editing and linguistic corrections to the manuscript.Disclosure statementNo potential conflict of interest was reported by the author(s).Additional informationFundingThis work was supported by Ministry of Science and Higher Education of the Russian Federation: [Theme Number 122042700045-3]; Scientific Project of Lomonosov Moscow State University: [Theme Number 121032300080-0]; Papanin Institute for Biology of Inland Waters RAS.: [Theme Number No. 121051100099-5].
摘要本研究发现的中心硅藻种Aulacoseira konstantinovii来自柬埔寨的tonl湖(Lake tonl Sap),但被错误地归入Aulacoseira属。随后,基于一组独特的形态特征,以该湖泊的材料为基础,建立了Praecyclostephanos属和P. boengchmariensis单种。检查已发表的资料,使我们能够比较A. konstantinovii和P. boengchmariensis的形态,并确认它们的同一性。一种新组合,常青藤梳。因此建议11月11日。S.I. Genkal的工作是在内陆水域生物研究所的机构研究项目“大陆水域藻类和植物群落的多样性、结构和功能”(No. 121051100099-5)中进行的。A.M.的作品。Glushchenko是在俄罗斯联邦科学和高等教育部的国家任务范围内进行的(主题号122042700045-3)。ma Gololobova的工作是作为俄罗斯联邦政府对罗蒙诺索夫莫斯科国立大学的国家命令科学项目(编号121032300080-0)的一部分进行的。我们非常感谢两位匿名审稿人的建设性和有益的意见,Loïc Tudesque允许我们使用Praecyclostephanos boengchmariensis的显微照片,以及Nicholas Turland对命名法和代码的解释。我们也非常感谢Eileen J. Cox对手稿的编辑和语言修改。披露声明作者未报告潜在的利益冲突。本工作得到俄罗斯联邦科学和高等教育部的支持:[主题号122042700045-3];莫斯科国立罗蒙诺索夫大学科学项目[主题号121032300080-0];内陆水域生物研究所。:[主题号121051100099-5]。
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引用次数: 0
Systematic reappraisal of the diminutive Amphora thumensis and the transfer of Halamphora parathumensis to the genus Amphora 小型土耳草的系统重新鉴定和副土耳草向土耳草属的转移
3区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-10-17 DOI: 10.1080/0269249x.2023.2265380
Joshua G. Stepanek, Tate E. Carlson, Lauren E. Rumley, Matthew L. Julius
AbstractSince its description the amphoroid diatom Amphora thumensis has confounded simple taxonomic classification having been assigned to Amphora, Cymbella, and now Halamphora. Taxonomic ambiguity around this taxon stems from its small size and reduced, often contradictory, morphological features. In this investigation, we confirm the taxonomic position of A. thumensis by presenting a four-marker molecular phylogeny for a population collected from a small spring-fed lake in the Rocky Mountains of Colorado, USA. Our phylogenetic hypothesis places A. thumensis not within the genus Halamphora, but within the deep branching lineages of Amphora. We discuss this phylogenetic hypothesis in the context of the morphological and ecological diversity of the genus and evaluate the utility of putative diagnostic characters within Amphora. In light of this new evidence, the valid name Amphora thumensis (Mayer) Krieger is identified as the preferred designation for this taxon. Consequently, we transfer the morphologically similar Halamphora parathumensis to Amphora.Keywords: Halamphora thumensistaxonomyphylogenyamphoroid diatom Disclosure statementNo potential conflict of interest was reported by the authors.Supplemental dataSupplemental data for this article can be accessed at https://doi.org/10.1080/0269249X.2023.2265380.Additional informationFundingThe authors would like to thank the Vail Valley campus of Colorado Mountain College for project funding.
摘要双壳硅藻Amphora thumensis自被发现以来一直混淆了简单的分类,先后被划分为双壳藻、Cymbella和Halamphora。围绕这个分类单元的分类歧义源于它的小尺寸和减少的,经常矛盾的形态特征。在这项调查中,我们通过对美国科罗拉多州落基山脉一个小的泉源湖泊中收集的一个种群的四标记分子系统发育,确认了thumensis的分类地位。我们的系统发育假说将A. thumensis不属于双耳属,而是属于双耳属的深分支谱系。我们在双耳属的形态和生态多样性的背景下讨论了这一系统发育假说,并评估了假定的双耳属诊断特征的效用。根据这一新的证据,有效名称Amphora thumensis (Mayer) Krieger被确定为该分类群的首选名称。因此,我们将形态相似的Halamphora parathumensis转移到Amphora。关键词:海带藻,大鲵,分类植物,系统发育,海带藻,硅藻披露声明作者未报道潜在利益冲突。补充数据本文的补充数据可访问https://doi.org/10.1080/0269249X.2023.2265380.Additional informationfunding作者感谢科罗拉多山学院Vail Valley校区为项目提供资金。
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引用次数: 0
Description of Gomphonella saldanensis sp. nov. (Bacillariophyceae) from hydromagnesite stromatolites in Salda Lake, Turkey 土耳其萨尔达湖水藻叠层石中萨尔达鹅膏菌(Bacillarophyceae)的描述
IF 1.8 3区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-04-03 DOI: 10.1080/0269249X.2023.2233519
C. Solak, Z. Levkov, P. Hamilton, A. Wishkerman, E. Yılmaz, M. Bąk, L. Peszek, S. Blanco
Lake Salda has a unique environment due to the presence of hydromagnesite stromatolites. Samples collected from the stromatolites contained a new diatom species, Gomphonella saldanensis sp. nov., which is described based on light and scanning electron microscopy. The main character of the taxon is its linear-lanceolate outline with a rostrate headpole and narrowly rounded footpole. The striae are strongly radiate mid-valve, becoming parallel to slightly radiate towards the poles. Elliptical Fourier and Linear Discriminant analyses indicate that there are different shape forms within the same taxon. Based on LM observations, G. saldanensis is similar to Gomphonema lagerheimii f. simplex, G. geisslerae, Gomphonella calcarea, G. olivacea, G. acsiae and G. coxiae. However, G. lagerheimii f. simplex differs with slightly radiate striae throughout the valve. Gomphonella geisslerae has a slightly undulate raphe and linear apices. Larger specimens of G. acsiae are lanceolate, clavate in smaller specimens. The remaining Gomphonella species, G. calcarea, G. coxiae and G. olivacea have broader outlines and lower stria densities.
萨尔达湖有一个独特的环境,因为水镁石叠层石的存在。从叠层石中采集的样品含有一种新的硅藻物种,即萨尔丹Gomphonella saldanensis sp.nov.,这是基于光学和扫描电子显微镜描述的。该分类单元的主要特征是其线状披针形的轮廓,具有喙状的头极和狭圆形的足极。纹强烈地向瓣中部辐射,变得平行而轻微地向两极辐射。椭圆傅立叶和线性判别分析表明,在同一分类单元中存在不同的形状形式。根据LM观察,萨尔丹鹅膏菌与普通鹅膏菌(Gomphonela lagerheimii f.simplex)、盖斯雷鹅膏菌、钙斑鹅膏菌和橄榄鹅膏菌相似。然而,G.lagerheiii f.simplex不同之处在于整个瓣膜有轻微的放射纹。艺妓蛾的中缝稍有起伏,顶端呈线状。艾的较大标本为披针形,较小标本为棒状。剩下的Gomphonella物种,G.calcarea、G.coxiae和G.olivacea具有更宽的轮廓和更低的条纹密度。
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引用次数: 0
Filling reference libraries with diatom environmental sequences: strengths and weaknesses 用硅藻环境序列填充参考库:优点和缺点
3区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-04-03 DOI: 10.1080/0269249x.2023.2237977
Hristina Kochoska, Cécile Chardon, Teofana Chonova, François Keck, Lenaïg Kermarrec, Floriane Larras, Estelle Lefrancois, Sinziana F. Rivera, Kálmán Tapolczai, Valentin Vasselon, Zlatko Levkov, Frédéric Rimet
Diatom species identification with DNA metabarcoding is an economical, fast and reliable alternative to identification via light microscopy for river quality monitoring. Using a short DNA sequence of the rbcL gene and ‘Diat.barcode’, a reference barcode library, enables the identification of more than 90% of the environmental sequences to species level in French rivers. But the completeness of this library is much lower in other regions, such as the tropical French overseas departments. A barcode library completion method using high-throughput sequencing data combined with microscopy count data from natural samples (Rimet et al. Citation2018) was applied and tested in rivers of Martinique and Guadeloupe (West Indies), for which only 45% of the environmental sequences could be identified to species level using Diat.barcode v9. Assigning barcodes to the most abundant species in the islands by this method is illustrated with Ulnaria goulardii and two new species belonging to Nupela and Epithemia, which are also described in this paper. The more complex situation of morphologically similar species is illustrated by reference to Gomphonema designatum and G. bourbonense. Using a combination of molecular and morphological data, their conspecificity, as G. bourbonense, is demonstrated with their reference barcodes. However, when several morphologically similar species and several environmental sequences belonging to the same clade are present, it is not possible to relate the barcodes to corresponding morphological species.Applying this method enabled the Diat.barcode library (v.10) to be updated, with 84% of the environmental sequences from the West Indies now identifiable at the species level. However, many morphological species still lack barcodes. In these cases, more classical methods, such as cell isolation, Sanger sequencing and morphological observations of cultures, must be applied.
应用DNA元条形码技术鉴定硅藻种类是一种经济、快速、可靠的替代光镜鉴定的方法。利用rbcL基因的短DNA序列和' Diat。barcode’是一个参考条形码库,可以识别法国河流中90%以上的环境序列。但在其他地区,如法国热带海外部,该图书馆的完整性要低得多。采用高通量测序数据结合自然样品显微计数数据的条形码库补全方法(Rimet等)。Citation2018)在马提尼克岛和瓜德罗普岛(西印度群岛)的河流中进行了应用和测试,其中只有45%的环境序列可以使用Diat识别到物种水平。条形码v9。本文还以Ulnaria goulardii和Nupela和Epithemia两种新种为例,说明了该方法对岛上最丰富的物种进行了条形码定位。形态相似的物种的情况更为复杂,可以通过参考Gomphonema designatum和G. bourbonense来说明。利用分子和形态数据的结合,他们的同一性,作为波旁蛇,被证明与他们的参考条形码。然而,当几个形态相似的物种和几个属于同一进化支的环境序列存在时,不可能将条形码与相应的形态物种联系起来。应用这种方法启用了Diat。将更新条形码库(v.10),其中来自西印度群岛的84%的环境序列现在可以在物种水平上识别。然而,许多形态物种仍然缺乏条形码。在这些情况下,必须采用更经典的方法,如细胞分离、桑格测序和培养物的形态学观察。
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引用次数: 0
Orthoseira helvetica sp. nov. – a new diatom (Bacillariophyceae) from the Swiss Alps 瑞士阿尔卑斯山新硅藻Orthoseira helvetica sp.nov
IF 1.8 3区 生物学 Q3 Agricultural and Biological Sciences Pub Date : 2023-04-03 DOI: 10.1080/0269249X.2023.2230972
Łukasz Peszek, C. Robinson, Mateusz Rybak, B. Kawecka
This paper describes a new diatom species (Orthoseira helvetica sp. nov.) found in the Swiss Alps at an elevation over 2600 m a.s.l. The diatom was recorded at the Macun plateau, Swiss National Park, from samples of terrestrial and wet semi-terrestrial mosses near the stream splash zone. The diatom has a unique set of features and is easily recognized under light and scanning electron microscopy. The most distinctive feature is the presence of a prominent silica collar in a ‘rose flower’ shape rounding each carinoportulae and an additional silica collar on the areolae (first 3–4 rows) bordering the hyaline area. The valve diameter of O. helvetica sp. nov. is 7.5–26.5 µm and possesses 2–3 (usually 3) carinoportulae. Linking spines at the valve face/mantle junction are present, having a simple basis and being triangular in shape.
本文描述了一种新的硅藻(Orthoseira helvetica sp.nov.),发现于海拔2600米以上的瑞士阿尔卑斯山 m a.s.l.在瑞士国家公园的马昆高原,从溪流飞溅区附近的陆地和潮湿的半陆地苔藓样本中记录到了硅藻。硅藻有一套独特的特征,在光学和扫描电子显微镜下很容易识别。最显著的特征是每个隆突周围都有一个突出的“玫瑰花”形状的二氧化硅项圈,在与透明质区域接壤的乳晕(前3-4排)上还有一个额外的二氧化硅项圈。helvetica sp.nov.的瓣膜直径为7.5–26.5 µm,并具有2–3个(通常为3个)隆突。瓣膜表面/地幔交界处存在连接棘,其基础简单,形状呈三角形。
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引用次数: 1
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Diatom Research
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